RNA–Protein interactions for RNA: ENST00000429801.5

NUP98-207, Transcript of nucleoporin 98, humanhuman

TSL 1 (best)

Gene NUP98, Length 2,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-207ENST00000429801 NISCHQ9Y2I1 1504 aa19.69■□□□□ 0.74
NUP98-207ENST00000429801 CCDC180Q9P1Z9 1646 aa17.29■□□□□ 0.36
NUP98-207ENST00000429801 ZCCHC6Q5VYS8 1495 aaKnown RBP16.49■□□□□ 0.23
NUP98-207ENST00000429801 ABCC9O60706 1549 aa16.49■□□□□ 0.23
NUP98-207ENST00000429801 DCAF8L2P0C7V8 631 aa16.32■□□□□ 0.2
NUP98-207ENST00000429801 DCAF1Q9Y4B6 1507 aa16.31■□□□□ 0.2
NUP98-207ENST00000429801 MYO15BQ96JP2 1530 aa16.21■□□□□ 0.19
NUP98-207ENST00000429801 NACADO15069 1562 aa16.16■□□□□ 0.18
NUP98-207ENST00000429801 RB1CC1Q8TDY2 1594 aa16.07■□□□□ 0.16
NUP98-207ENST00000429801 SHROOM4Q9ULL8 1493 aa15.86■□□□□ 0.13
NUP98-207ENST00000429801 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
NUP98-207ENST00000429801 UNC13AQ9UPW8 1703 aa15.67■□□□□ 0.1
NUP98-207ENST00000429801 BICRAQ9NZM4 1560 aa15.53■□□□□ 0.08
NUP98-207ENST00000429801 PABPN1Q86U42 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
NUP98-207ENST00000429801 CECR2Q9BXF3 1484 aa15.28■□□□□ 0.04
NUP98-207ENST00000429801 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
NUP98-207ENST00000429801 RSF1Q96T23 1441 aaPredicted RBP15.18■□□□□ 0.02
NUP98-207ENST00000429801 SUPT5HO00267 1087 aaKnown RBP15.18■□□□□ 0.02
NUP98-207ENST00000429801 MROH2BQ7Z745 1585 aa15.17■□□□□ 0.02
NUP98-207ENST00000429801 SMARCA4P51532 1647 aa15.17■□□□□ 0.02
NUP98-207ENST00000429801 EIF4G1Q04637 1599 aaKnown RBP15.11■□□□□ 0.01
NUP98-207ENST00000429801 PELP1Q8IZL8 1130 aaKnown RBP15.09■□□□□ 0.01
NUP98-207ENST00000429801 WIZO95785 1651 aa15.03■□□□□ -0
NUP98-207ENST00000429801 PEG3Q9GZU2 1588 aa15.02□□□□□ -0.01
NUP98-207ENST00000429801 SMARCA2P51531 1590 aa14.99□□□□□ -0.01
NUP98-207ENST00000429801 ATAD2BQ9ULI0 1458 aa14.98□□□□□ -0.01
NUP98-207ENST00000429801 CC2D2AQ9P2K1 1620 aa14.93□□□□□ -0.02
NUP98-207ENST00000429801 TOP2AP11388 1531 aaKnown RBP14.91□□□□□ -0.02
NUP98-207ENST00000429801 NCAPD3P42695 1498 aa14.91□□□□□ -0.02
NUP98-207ENST00000429801 BAZ1BQ9UIG0 1483 aaKnown RBP14.9□□□□□ -0.02
NUP98-207ENST00000429801 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
NUP98-207ENST00000429801 MYT1Q01538 1121 aa14.77□□□□□ -0.04
NUP98-207ENST00000429801 CCDC88BA6NC98 1476 aa14.74□□□□□ -0.05
NUP98-207ENST00000429801 DNAJC5BQ9UF47 199 aa14.71□□□□□ -0.05
NUP98-207ENST00000429801 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
NUP98-207ENST00000429801 CADPSQ9ULU8 1353 aa14.51□□□□□ -0.09
NUP98-207ENST00000429801 CFTRP13569 1480 aa14.51□□□□□ -0.09
NUP98-207ENST00000429801 SLC24A1O60721 1099 aa14.49□□□□□ -0.09
NUP98-207ENST00000429801 LAMC3Q9Y6N6 1575 aa14.44□□□□□ -0.1
NUP98-207ENST00000429801 PRDM2Q13029 1718 aa14.41□□□□□ -0.1
NUP98-207ENST00000429801 NESP48681 1621 aa14.4□□□□□ -0.1
NUP98-207ENST00000429801 PRKCSHP14314 528 aaPredicted RBP14.39□□□□□ -0.11
NUP98-207ENST00000429801 PDS5BQ9NTI5 1447 aa14.35□□□□□ -0.11
NUP98-207ENST00000429801 FANCD2Q9BXW9 1451 aa14.34□□□□□ -0.11
NUP98-207ENST00000429801 ABCC8Q09428 1581 aa14.33□□□□□ -0.12
NUP98-207ENST00000429801 TRIM41Q8WV44 630 aa14.33□□□□□ -0.12
NUP98-207ENST00000429801 WRNQ14191 1432 aaPredicted RBP eCLIP14.31□□□□□ -0.12
NUP98-207ENST00000429801 CEP164Q9UPV0 1460 aa14.28□□□□□ -0.12
NUP98-207ENST00000429801 SYNJ1O43426 1573 aa14.23□□□□□ -0.13
NUP98-207ENST00000429801 KIF21AQ7Z4S6 1674 aa14.23□□□□□ -0.13
NUP98-207ENST00000429801 TTBK1Q5TCY1 1321 aaPredicted RBP14.22□□□□□ -0.13
NUP98-207ENST00000429801 TOP2BQ02880 1626 aa14.22□□□□□ -0.13
NUP98-207ENST00000429801 CUX1P39880 1505 aa14.21□□□□□ -0.13
NUP98-207ENST00000429801 BIVM-ERCC5R4GMW8 1640 aa14.2□□□□□ -0.14
NUP98-207ENST00000429801 ERCC6Q03468 1493 aa14.2□□□□□ -0.14
NUP98-207ENST00000429801 DNMBPQ6XZF7 1577 aa14.17□□□□□ -0.14
NUP98-207ENST00000429801 TOPBP1Q92547 1522 aa14.15□□□□□ -0.14
NUP98-207ENST00000429801 MRC2Q9UBG0 1479 aa14.15□□□□□ -0.14
NUP98-207ENST00000429801 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
NUP98-207ENST00000429801 AEBP2Q6ZN18 517 aaPredicted RBP14.13□□□□□ -0.15
NUP98-207ENST00000429801 FGD5Q6ZNL6 1462 aa14.1□□□□□ -0.15
NUP98-207ENST00000429801 WDR62O43379 1518 aa14.08□□□□□ -0.15
NUP98-207ENST00000429801 THOC2Q8NI27 1593 aaKnown RBP14.07□□□□□ -0.16
NUP98-207ENST00000429801 POLA1P09884 1462 aaPredicted RBP14.06□□□□□ -0.16
NUP98-207ENST00000429801 SOGA1O94964 1423 aa14.03□□□□□ -0.16
NUP98-207ENST00000429801 HRCP23327 699 aa14.03□□□□□ -0.16
NUP98-207ENST00000429801 EEA1Q15075 1411 aa14.03□□□□□ -0.16
NUP98-207ENST00000429801 FAM9AQ8IZU1 332 aaPredicted RBP14.01□□□□□ -0.17
NUP98-207ENST00000429801 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
NUP98-207ENST00000429801 RAD54L2Q9Y4B4 1467 aa14□□□□□ -0.17
NUP98-207ENST00000429801 KIF27Q86VH2 1401 aa13.99□□□□□ -0.17
NUP98-207ENST00000429801 ABCA10Q8WWZ4 1543 aa13.99□□□□□ -0.17
NUP98-207ENST00000429801 RUSC2Q8N2Y8 1516 aa13.97□□□□□ -0.17
NUP98-207ENST00000429801 CUX2O14529 1486 aa13.97□□□□□ -0.17
NUP98-207ENST00000429801 IFT140Q96RY7 1462 aa13.96□□□□□ -0.17
NUP98-207ENST00000429801 CSRNP3Q8WYN3 585 aa13.95□□□□□ -0.18
NUP98-207ENST00000429801 TARBP1Q13395 1621 aaKnown RBP13.95□□□□□ -0.18
NUP98-207ENST00000429801 BCL11AQ9H165 835 aa13.94□□□□□ -0.18
NUP98-207ENST00000429801 WDR97A6NE52 1622 aa13.93□□□□□ -0.18
NUP98-207ENST00000429801 TDRD9Q8NDG6 1382 aaKnown RBP13.89□□□□□ -0.19
NUP98-207ENST00000429801 GAPVD1Q14C86 1478 aa13.87□□□□□ -0.19
NUP98-207ENST00000429801 ABCA5Q8WWZ7 1642 aa13.87□□□□□ -0.19
NUP98-207ENST00000429801 APLP2Q06481 763 aa13.87□□□□□ -0.19
NUP98-207ENST00000429801 IGF1RP08069 1367 aa13.86□□□□□ -0.19
NUP98-207ENST00000429801 PPARGC1BQ86YN6 1023 aaKnown RBP13.85□□□□□ -0.19
NUP98-207ENST00000429801 ZNF608Q9ULD9 1512 aaPredicted RBP13.84□□□□□ -0.19
NUP98-207ENST00000429801 AQRO60306 1485 aaKnown RBP eCLIP13.84□□□□□ -0.192e-6■■■■□ 26.6
NUP98-207ENST00000429801 LOC105371045A0A1W2PR82 267 aa13.84□□□□□ -0.19
NUP98-207ENST00000429801 ERICH3Q5RHP9 1530 aa13.83□□□□□ -0.2
NUP98-207ENST00000429801 KIF21BO75037 1637 aa13.82□□□□□ -0.2
NUP98-207ENST00000429801 PRXQ9BXM0 1461 aa13.81□□□□□ -0.2
NUP98-207ENST00000429801 GRIN2BQ13224 1484 aa13.81□□□□□ -0.2
NUP98-207ENST00000429801 EIF4G3O43432 1585 aaKnown RBP13.8□□□□□ -0.2
NUP98-207ENST00000429801 CARMIL1Q5VZK9 1371 aa13.8□□□□□ -0.2
NUP98-207ENST00000429801 GOLGA3Q08378 1498 aa13.8□□□□□ -0.2
NUP98-207ENST00000429801 CUL7Q14999 1698 aa13.79□□□□□ -0.2
NUP98-207ENST00000429801 EHMT2Q96KQ7 1210 aa13.79□□□□□ -0.2
NUP98-207ENST00000429801 PBRM1Q86U86 1689 aa13.79□□□□□ -0.2
NUP98-207ENST00000429801 RAPGEF2Q9Y4G8 1499 aa13.77□□□□□ -0.21
NUP98-207ENST00000429801 UBTFP17480 764 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 257.5 ms