RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 AEBP2Q6ZN18 517 aaPredicted RBP23.47■■□□□ 1.35
HDAC1-202ENST00000428704 CHIC1Q5VXU3 224 aa22.93■■□□□ 1.26
HDAC1-202ENST00000428704 NISCHQ9Y2I1 1504 aa21.35■■□□□ 1.01
HDAC1-202ENST00000428704 ABCC9O60706 1549 aa20.23■□□□□ 0.83
HDAC1-202ENST00000428704 PHF23Q9BUL5 403 aaPredicted RBP20.16■□□□□ 0.82
HDAC1-202ENST00000428704 SENP3Q9H4L4 574 aaPredicted RBP19.93■□□□□ 0.78
HDAC1-202ENST00000428704 DNAJC5BQ9UF47 199 aa19.61■□□□□ 0.73
HDAC1-202ENST00000428704 CCDC180Q9P1Z9 1646 aa19.41■□□□□ 0.7
HDAC1-202ENST00000428704 RB1CC1Q8TDY2 1594 aa18.89■□□□□ 0.62
HDAC1-202ENST00000428704 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
HDAC1-202ENST00000428704 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
HDAC1-202ENST00000428704 NACADO15069 1562 aa18.58■□□□□ 0.56
HDAC1-202ENST00000428704 DNAJC5Q9H3Z4 198 aa18.55■□□□□ 0.56
HDAC1-202ENST00000428704 FOXD1Q16676 465 aa18.48■□□□□ 0.55
HDAC1-202ENST00000428704 DCAF8L2P0C7V8 631 aa18.46■□□□□ 0.55
HDAC1-202ENST00000428704 BICRAQ9NZM4 1560 aa18.33■□□□□ 0.52
HDAC1-202ENST00000428704 UNC13AQ9UPW8 1703 aa18.32■□□□□ 0.52
HDAC1-202ENST00000428704 CECR2Q9BXF3 1484 aa18.3■□□□□ 0.52
HDAC1-202ENST00000428704 CC2D2AQ9P2K1 1620 aa18.18■□□□□ 0.5
HDAC1-202ENST00000428704 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
HDAC1-202ENST00000428704 SHROOM4Q9ULL8 1493 aa18.06■□□□□ 0.48
HDAC1-202ENST00000428704 EIF4G1Q04637 1599 aaKnown RBP17.98■□□□□ 0.47
HDAC1-202ENST00000428704 PPP6R1Q9UPN7 881 aa17.79■□□□□ 0.44
HDAC1-202ENST00000428704 ADRA2BP18089 450 aa17.76■□□□□ 0.43
HDAC1-202ENST00000428704 CUX2O14529 1486 aa17.72■□□□□ 0.43
HDAC1-202ENST00000428704 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
HDAC1-202ENST00000428704 DCAF1Q9Y4B6 1507 aa17.57■□□□□ 0.4
HDAC1-202ENST00000428704 ERCC6Q03468 1493 aa17.56■□□□□ 0.4
HDAC1-202ENST00000428704 ZCCHC6Q5VYS8 1495 aaKnown RBP17.55■□□□□ 0.4
HDAC1-202ENST00000428704 TRIM41Q8WV44 630 aa17.5■□□□□ 0.39
HDAC1-202ENST00000428704 PIAS4Q8N2W9 510 aaPredicted RBP17.43■□□□□ 0.38
HDAC1-202ENST00000428704 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
HDAC1-202ENST00000428704 NESP48681 1621 aa17.15■□□□□ 0.34
HDAC1-202ENST00000428704 THOC2Q8NI27 1593 aaKnown RBP17.07■□□□□ 0.32
HDAC1-202ENST00000428704 MSH5O43196 834 aa17.07■□□□□ 0.32
HDAC1-202ENST00000428704 ATAD2BQ9ULI0 1458 aa17.03■□□□□ 0.32
HDAC1-202ENST00000428704 SMARCA2P51531 1590 aa16.99■□□□□ 0.31
HDAC1-202ENST00000428704 HMGXB3Q12766 1538 aa16.96■□□□□ 0.31
HDAC1-202ENST00000428704 LAMC3Q9Y6N6 1575 aa16.89■□□□□ 0.29
HDAC1-202ENST00000428704 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
HDAC1-202ENST00000428704 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
HDAC1-202ENST00000428704 OSCARQ8IYS5 282 aa16.83■□□□□ 0.28
HDAC1-202ENST00000428704 KIF21AQ7Z4S6 1674 aa16.82■□□□□ 0.28
HDAC1-202ENST00000428704 BAZ1AQ9NRL2 1556 aaPredicted RBP16.8■□□□□ 0.28
HDAC1-202ENST00000428704 SMARCA4P51532 1647 aa16.79■□□□□ 0.28
HDAC1-202ENST00000428704 MRC2Q9UBG0 1479 aa16.76■□□□□ 0.27
HDAC1-202ENST00000428704 WDR62O43379 1518 aa16.7■□□□□ 0.26
HDAC1-202ENST00000428704 CADPSQ9ULU8 1353 aa16.65■□□□□ 0.26
HDAC1-202ENST00000428704 PEG3Q9GZU2 1588 aa16.62■□□□□ 0.25
HDAC1-202ENST00000428704 RIMBP3CA6NJZ7 1639 aa16.62■□□□□ 0.25
HDAC1-202ENST00000428704 RIMBP3BA6NNM3 1639 aa16.62■□□□□ 0.25
HDAC1-202ENST00000428704 RIMBP3Q9UFD9 1639 aa16.62■□□□□ 0.25
HDAC1-202ENST00000428704 TRHP20396 242 aaPredicted RBP16.59■□□□□ 0.25
HDAC1-202ENST00000428704 CEP164Q9UPV0 1460 aa16.55■□□□□ 0.24
HDAC1-202ENST00000428704 ARHGEF11O15085 1522 aa16.52■□□□□ 0.24
HDAC1-202ENST00000428704 CYB5RLQ6IPT4 315 aa16.5■□□□□ 0.23
HDAC1-202ENST00000428704 FANCD2Q9BXW9 1451 aa16.47■□□□□ 0.23
HDAC1-202ENST00000428704 MROH2BQ7Z745 1585 aa16.45■□□□□ 0.22
HDAC1-202ENST00000428704 PPP4R3CPQ6ZMV5 832 aa16.4■□□□□ 0.22
HDAC1-202ENST00000428704 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
HDAC1-202ENST00000428704 ARAP1Q96P48 1450 aa16.31■□□□□ 0.2
HDAC1-202ENST00000428704 CFTRP13569 1480 aa16.29■□□□□ 0.2
HDAC1-202ENST00000428704 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
HDAC1-202ENST00000428704 ZNF608Q9ULD9 1512 aaPredicted RBP16.28■□□□□ 0.2
HDAC1-202ENST00000428704 IFT140Q96RY7 1462 aa16.25■□□□□ 0.19
HDAC1-202ENST00000428704 RSF1Q96T23 1441 aaPredicted RBP16.19■□□□□ 0.18
HDAC1-202ENST00000428704 WIZO95785 1651 aa16.18■□□□□ 0.18
HDAC1-202ENST00000428704 FBLN2P98095 1184 aa16.17■□□□□ 0.18
HDAC1-202ENST00000428704 EIF4G3O43432 1585 aaKnown RBP16.12■□□□□ 0.17
HDAC1-202ENST00000428704 MAPK8IP2Q13387 824 aaPredicted RBP16.11■□□□□ 0.17
HDAC1-202ENST00000428704 CHD1O14646 1710 aa16.08■□□□□ 0.17
HDAC1-202ENST00000428704 TOPBP1Q92547 1522 aa16.05■□□□□ 0.16
HDAC1-202ENST00000428704 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.161e-11■■■■■ 33.4
HDAC1-202ENST00000428704 KCNA4P22459 653 aa16■□□□□ 0.15
HDAC1-202ENST00000428704 ILDR1Q86SU0 546 aaPredicted RBP16■□□□□ 0.15
HDAC1-202ENST00000428704 NCBP3Q53F19 620 aaKnown RBP15.98■□□□□ 0.15
HDAC1-202ENST00000428704 ABCC8Q09428 1581 aa15.97■□□□□ 0.15
HDAC1-202ENST00000428704 TOP2AP11388 1531 aaKnown RBP15.97■□□□□ 0.15
HDAC1-202ENST00000428704 CNKSR2Q8WXI2 1034 aa15.96■□□□□ 0.15
HDAC1-202ENST00000428704 CLASP1Q7Z460 1538 aa15.94■□□□□ 0.14
HDAC1-202ENST00000428704 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
HDAC1-202ENST00000428704 TARBP1Q13395 1621 aaKnown RBP15.91■□□□□ 0.14
HDAC1-202ENST00000428704 CHMP7Q8WUX9 453 aaPredicted RBP15.91■□□□□ 0.14
HDAC1-202ENST00000428704 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
HDAC1-202ENST00000428704 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
HDAC1-202ENST00000428704 SYNJ1O43426 1573 aa15.89■□□□□ 0.13
HDAC1-202ENST00000428704 GAPVD1Q14C86 1478 aa15.88■□□□□ 0.13
HDAC1-202ENST00000428704 SNAPC4Q5SXM2 1469 aa15.88■□□□□ 0.13
HDAC1-202ENST00000428704 TDRD9Q8NDG6 1382 aaKnown RBP15.87■□□□□ 0.13
HDAC1-202ENST00000428704 POLA1P09884 1462 aaPredicted RBP15.84■□□□□ 0.13
HDAC1-202ENST00000428704 RAD54L2Q9Y4B4 1467 aa15.82■□□□□ 0.12
HDAC1-202ENST00000428704 CCDC88BA6NC98 1476 aa15.8■□□□□ 0.12
HDAC1-202ENST00000428704 SOGA1O94964 1423 aa15.79■□□□□ 0.12
HDAC1-202ENST00000428704 MAGI1Q96QZ7 1491 aaPredicted RBP15.78■□□□□ 0.12
HDAC1-202ENST00000428704 SYNJ2O15056 1496 aa15.75■□□□□ 0.11
HDAC1-202ENST00000428704 GRIN2BQ13224 1484 aa15.73■□□□□ 0.11
HDAC1-202ENST00000428704 NPM3O75607 178 aaKnown RBP15.73■□□□□ 0.11
HDAC1-202ENST00000428704 WDR97A6NE52 1622 aa15.72■□□□□ 0.11
HDAC1-202ENST00000428704 KDM4FA0A1W2PPD8 638 aa15.71■□□□□ 0.11
HDAC1-202ENST00000428704 RNF216Q9NWF9 866 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms