RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 NISCHQ9Y2I1 1504 aa23.13■■□□□ 1.29
TRIM39-208ENST00000428555 CCDC180Q9P1Z9 1646 aa20.48■□□□□ 0.87
TRIM39-208ENST00000428555 ABCC9O60706 1549 aa20.44■□□□□ 0.86
TRIM39-208ENST00000428555 DCAF8L2P0C7V8 631 aa19.64■□□□□ 0.73
TRIM39-208ENST00000428555 RB1CC1Q8TDY2 1594 aa19.47■□□□□ 0.71
TRIM39-208ENST00000428555 NACADO15069 1562 aa19.4■□□□□ 0.7
TRIM39-208ENST00000428555 MYO15BQ96JP2 1530 aa19.21■□□□□ 0.67
TRIM39-208ENST00000428555 PABPN1Q86U42 306 aaKnown RBP eCLIP19.2■□□□□ 0.66
TRIM39-208ENST00000428555 ZCCHC6Q5VYS8 1495 aaKnown RBP19.19■□□□□ 0.66
TRIM39-208ENST00000428555 DNAJC5BQ9UF47 199 aa19.08■□□□□ 0.64
TRIM39-208ENST00000428555 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
TRIM39-208ENST00000428555 BICRAQ9NZM4 1560 aa18.91■□□□□ 0.62
TRIM39-208ENST00000428555 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
TRIM39-208ENST00000428555 SCRIBQ14160 1630 aa18.79■□□□□ 0.6
TRIM39-208ENST00000428555 SHROOM4Q9ULL8 1493 aa18.62■□□□□ 0.57
TRIM39-208ENST00000428555 EIF4G1Q04637 1599 aaKnown RBP18.42■□□□□ 0.54
TRIM39-208ENST00000428555 CC2D2AQ9P2K1 1620 aa18.4■□□□□ 0.54
TRIM39-208ENST00000428555 CECR2Q9BXF3 1484 aa18.38■□□□□ 0.53
TRIM39-208ENST00000428555 NCAPD3P42695 1498 aa17.99■□□□□ 0.47
TRIM39-208ENST00000428555 ATAD2BQ9ULI0 1458 aa17.97■□□□□ 0.47
TRIM39-208ENST00000428555 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
TRIM39-208ENST00000428555 BAZ1AQ9NRL2 1556 aaPredicted RBP17.9■□□□□ 0.46
TRIM39-208ENST00000428555 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
TRIM39-208ENST00000428555 MROH2BQ7Z745 1585 aa17.85■□□□□ 0.45
TRIM39-208ENST00000428555 BAZ1BQ9UIG0 1483 aaKnown RBP17.78■□□□□ 0.44
TRIM39-208ENST00000428555 HMGXB3Q12766 1538 aa17.77■□□□□ 0.44
TRIM39-208ENST00000428555 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
TRIM39-208ENST00000428555 NESP48681 1621 aa17.63■□□□□ 0.41
TRIM39-208ENST00000428555 RSF1Q96T23 1441 aaPredicted RBP17.63■□□□□ 0.41
TRIM39-208ENST00000428555 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
TRIM39-208ENST00000428555 WIZO95785 1651 aa17.59■□□□□ 0.41
TRIM39-208ENST00000428555 CADPSQ9ULU8 1353 aa17.5■□□□□ 0.39
TRIM39-208ENST00000428555 LAMC3Q9Y6N6 1575 aa17.45■□□□□ 0.38
TRIM39-208ENST00000428555 PDS5BQ9NTI5 1447 aa17.44■□□□□ 0.38
TRIM39-208ENST00000428555 CUX2O14529 1486 aa17.44■□□□□ 0.38
TRIM39-208ENST00000428555 TOP2AP11388 1531 aaKnown RBP17.37■□□□□ 0.37
TRIM39-208ENST00000428555 CFTRP13569 1480 aa17.31■□□□□ 0.36
TRIM39-208ENST00000428555 DNAJC5Q9H3Z4 198 aa17.29■□□□□ 0.36
TRIM39-208ENST00000428555 CCDC88BA6NC98 1476 aa17.28■□□□□ 0.36
TRIM39-208ENST00000428555 KIF21AQ7Z4S6 1674 aa17.27■□□□□ 0.36
TRIM39-208ENST00000428555 THOC2Q8NI27 1593 aaKnown RBP17.27■□□□□ 0.35
TRIM39-208ENST00000428555 FANCD2Q9BXW9 1451 aa17.24■□□□□ 0.35
TRIM39-208ENST00000428555 MRC2Q9UBG0 1479 aa17.23■□□□□ 0.35
TRIM39-208ENST00000428555 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
TRIM39-208ENST00000428555 SUPT5HO00267 1087 aaKnown RBP17.17■□□□□ 0.34
TRIM39-208ENST00000428555 WDR62O43379 1518 aa17.13■□□□□ 0.33
TRIM39-208ENST00000428555 URB2Q14146 1524 aaKnown RBP17.08■□□□□ 0.32
TRIM39-208ENST00000428555 TOPBP1Q92547 1522 aa16.93■□□□□ 0.3
TRIM39-208ENST00000428555 ABCC8Q09428 1581 aa16.91■□□□□ 0.3
TRIM39-208ENST00000428555 PRDM2Q13029 1718 aa16.9■□□□□ 0.3
TRIM39-208ENST00000428555 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
TRIM39-208ENST00000428555 ZNF608Q9ULD9 1512 aaPredicted RBP16.86■□□□□ 0.29
TRIM39-208ENST00000428555 OSCARQ8IYS5 282 aa16.85■□□□□ 0.29
TRIM39-208ENST00000428555 DNMBPQ6XZF7 1577 aa16.85■□□□□ 0.29
TRIM39-208ENST00000428555 SOGA1O94964 1423 aa16.79■□□□□ 0.28
TRIM39-208ENST00000428555 AQRO60306 1485 aaKnown RBP eCLIP16.78■□□□□ 0.284e-6■■■■■ 31
TRIM39-208ENST00000428555 POLA1P09884 1462 aaPredicted RBP16.78■□□□□ 0.28
TRIM39-208ENST00000428555 RAD54L2Q9Y4B4 1467 aa16.77■□□□□ 0.28
TRIM39-208ENST00000428555 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
TRIM39-208ENST00000428555 CUX1P39880 1505 aa16.74■□□□□ 0.27
TRIM39-208ENST00000428555 TARBP1Q13395 1621 aaKnown RBP16.71■□□□□ 0.27
TRIM39-208ENST00000428555 FGD5Q6ZNL6 1462 aa16.71■□□□□ 0.27
TRIM39-208ENST00000428555 FBLN2P98095 1184 aa16.7■□□□□ 0.26
TRIM39-208ENST00000428555 TRIM41Q8WV44 630 aa16.67■□□□□ 0.26
TRIM39-208ENST00000428555 EIF4G3O43432 1585 aaKnown RBP16.65■□□□□ 0.26
TRIM39-208ENST00000428555 CHMP7Q8WUX9 453 aaPredicted RBP16.59■□□□□ 0.25
TRIM39-208ENST00000428555 WRNQ14191 1432 aaPredicted RBP eCLIP16.59■□□□□ 0.25
TRIM39-208ENST00000428555 GRIN2BQ13224 1484 aa16.54■□□□□ 0.24
TRIM39-208ENST00000428555 SNAPC4Q5SXM2 1469 aa16.54■□□□□ 0.24
TRIM39-208ENST00000428555 GAPVD1Q14C86 1478 aa16.54■□□□□ 0.24
TRIM39-208ENST00000428555 ABCA10Q8WWZ4 1543 aa16.53■□□□□ 0.24
TRIM39-208ENST00000428555 WDR97A6NE52 1622 aa16.49■□□□□ 0.23
TRIM39-208ENST00000428555 SYNJ1O43426 1573 aa16.49■□□□□ 0.23
TRIM39-208ENST00000428555 TOP2BQ02880 1626 aa16.48■□□□□ 0.23
TRIM39-208ENST00000428555 MAGI1Q96QZ7 1491 aaPredicted RBP16.48■□□□□ 0.23
TRIM39-208ENST00000428555 CYB5RLQ6IPT4 315 aa16.46■□□□□ 0.23
TRIM39-208ENST00000428555 SYNJ2O15056 1496 aa16.45■□□□□ 0.22
TRIM39-208ENST00000428555 CHD1O14646 1710 aa16.45■□□□□ 0.22
TRIM39-208ENST00000428555 BIVM-ERCC5R4GMW8 1640 aa16.44■□□□□ 0.22
TRIM39-208ENST00000428555 ARHGEF11O15085 1522 aa16.43■□□□□ 0.22
TRIM39-208ENST00000428555 RIMBP3CA6NJZ7 1639 aa16.42■□□□□ 0.22
TRIM39-208ENST00000428555 RIMBP3BA6NNM3 1639 aa16.42■□□□□ 0.22
TRIM39-208ENST00000428555 RIMBP3Q9UFD9 1639 aa16.42■□□□□ 0.22
TRIM39-208ENST00000428555 ABCA5Q8WWZ7 1642 aa16.4■□□□□ 0.22
TRIM39-208ENST00000428555 PBRM1Q86U86 1689 aa16.34■□□□□ 0.21
TRIM39-208ENST00000428555 FHAD1B1AJZ9 1412 aa16.34■□□□□ 0.21
TRIM39-208ENST00000428555 CLASP1Q7Z460 1538 aa16.33■□□□□ 0.2
TRIM39-208ENST00000428555 GRIN2AQ12879 1464 aa16.31■□□□□ 0.2
TRIM39-208ENST00000428555 ARAP1Q96P48 1450 aa16.3■□□□□ 0.2
TRIM39-208ENST00000428555 ERICH3Q5RHP9 1530 aa16.29■□□□□ 0.2
TRIM39-208ENST00000428555 IGF1RP08069 1367 aa16.29■□□□□ 0.2
TRIM39-208ENST00000428555 KIF27Q86VH2 1401 aa16.27■□□□□ 0.19
TRIM39-208ENST00000428555 ADAMTS12P58397 1594 aa16.26■□□□□ 0.19
TRIM39-208ENST00000428555 NUP160Q12769 1436 aa16.26■□□□□ 0.19
TRIM39-208ENST00000428555 JPH4Q96JJ6 628 aa16.22■□□□□ 0.19
TRIM39-208ENST00000428555 CEP170Q5SW79 1584 aa16.21■□□□□ 0.19
TRIM39-208ENST00000428555 TRHP20396 242 aaPredicted RBP16.19■□□□□ 0.18
TRIM39-208ENST00000428555 CARMIL1Q5VZK9 1371 aa16.17■□□□□ 0.18
TRIM39-208ENST00000428555 ERCC6L2Q5T890 1561 aa16.15■□□□□ 0.18
TRIM39-208ENST00000428555 PRG4Q92954 1404 aaPredicted RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms