RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 NISCHQ9Y2I1 1504 aa29.28■■■□□ 2.28
TRIM39-207ENST00000428404 CCDC180Q9P1Z9 1646 aa25.69■■□□□ 1.7
TRIM39-207ENST00000428404 ABCC9O60706 1549 aa24.61■■□□□ 1.53
TRIM39-207ENST00000428404 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
TRIM39-207ENST00000428404 DCAF1Q9Y4B6 1507 aa24.26■■□□□ 1.47
TRIM39-207ENST00000428404 DCAF8L2P0C7V8 631 aa24.2■■□□□ 1.46
TRIM39-207ENST00000428404 MYO15BQ96JP2 1530 aa24.15■■□□□ 1.46
TRIM39-207ENST00000428404 NACADO15069 1562 aa24.06■■□□□ 1.44
TRIM39-207ENST00000428404 RB1CC1Q8TDY2 1594 aa23.91■■□□□ 1.42
TRIM39-207ENST00000428404 SCRIBQ14160 1630 aa23.49■■□□□ 1.35
TRIM39-207ENST00000428404 SHROOM4Q9ULL8 1493 aa23.47■■□□□ 1.35
TRIM39-207ENST00000428404 UNC13AQ9UPW8 1703 aa23.33■■□□□ 1.33
TRIM39-207ENST00000428404 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
TRIM39-207ENST00000428404 PABPN1Q86U42 306 aaKnown RBP eCLIP23.15■■□□□ 1.3
TRIM39-207ENST00000428404 CECR2Q9BXF3 1484 aa22.76■■□□□ 1.23
TRIM39-207ENST00000428404 BAZ1AQ9NRL2 1556 aaPredicted RBP22.61■■□□□ 1.21
TRIM39-207ENST00000428404 MROH2BQ7Z745 1585 aa22.58■■□□□ 1.2
TRIM39-207ENST00000428404 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
TRIM39-207ENST00000428404 SMARCA4P51532 1647 aa22.55■■□□□ 1.2
TRIM39-207ENST00000428404 EIF4G1Q04637 1599 aaKnown RBP22.52■■□□□ 1.2
TRIM39-207ENST00000428404 SUPT5HO00267 1087 aaKnown RBP22.41■■□□□ 1.18
TRIM39-207ENST00000428404 PEG3Q9GZU2 1588 aa22.36■■□□□ 1.17
TRIM39-207ENST00000428404 ATAD2BQ9ULI0 1458 aa22.33■■□□□ 1.16
TRIM39-207ENST00000428404 WIZO95785 1651 aa22.32■■□□□ 1.16
TRIM39-207ENST00000428404 SMARCA2P51531 1590 aa22.28■■□□□ 1.16
TRIM39-207ENST00000428404 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
TRIM39-207ENST00000428404 NCAPD3P42695 1498 aa22.24■■□□□ 1.15
TRIM39-207ENST00000428404 DNAJC5BQ9UF47 199 aa22.15■■□□□ 1.14
TRIM39-207ENST00000428404 TOP2AP11388 1531 aaKnown RBP22.13■■□□□ 1.13
TRIM39-207ENST00000428404 HMGXB3Q12766 1538 aa22.13■■□□□ 1.13
TRIM39-207ENST00000428404 BAZ1BQ9UIG0 1483 aaKnown RBP22.13■■□□□ 1.13
TRIM39-207ENST00000428404 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
TRIM39-207ENST00000428404 CADPSQ9ULU8 1353 aa21.62■■□□□ 1.05
TRIM39-207ENST00000428404 CFTRP13569 1480 aa21.62■■□□□ 1.05
TRIM39-207ENST00000428404 NESP48681 1621 aa21.49■■□□□ 1.03
TRIM39-207ENST00000428404 LAMC3Q9Y6N6 1575 aa21.48■■□□□ 1.03
TRIM39-207ENST00000428404 PRDM2Q13029 1718 aa21.36■■□□□ 1.01
TRIM39-207ENST00000428404 PDS5BQ9NTI5 1447 aa21.36■■□□□ 1.01
TRIM39-207ENST00000428404 FANCD2Q9BXW9 1451 aa21.33■■□□□ 1.01
TRIM39-207ENST00000428404 CHIC1Q5VXU3 224 aa21.33■■□□□ 1.01
TRIM39-207ENST00000428404 ABCC8Q09428 1581 aa21.24■□□□□ 0.99
TRIM39-207ENST00000428404 WRNQ14191 1432 aaPredicted RBP eCLIP21.22■□□□□ 0.99
TRIM39-207ENST00000428404 CEP164Q9UPV0 1460 aa21.22■□□□□ 0.99
TRIM39-207ENST00000428404 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
TRIM39-207ENST00000428404 TRIM41Q8WV44 630 aa21.15■□□□□ 0.98
TRIM39-207ENST00000428404 CUX1P39880 1505 aa21.14■□□□□ 0.97
TRIM39-207ENST00000428404 ERCC6Q03468 1493 aa21.13■□□□□ 0.97
TRIM39-207ENST00000428404 SYNJ1O43426 1573 aa21.12■□□□□ 0.97
TRIM39-207ENST00000428404 URB2Q14146 1524 aaKnown RBP21.1■□□□□ 0.97
TRIM39-207ENST00000428404 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
TRIM39-207ENST00000428404 MRC2Q9UBG0 1479 aa21.08■□□□□ 0.97
TRIM39-207ENST00000428404 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
TRIM39-207ENST00000428404 TOPBP1Q92547 1522 aa21.06■□□□□ 0.96
TRIM39-207ENST00000428404 BIVM-ERCC5R4GMW8 1640 aa21.06■□□□□ 0.96
TRIM39-207ENST00000428404 WDR62O43379 1518 aa20.99■□□□□ 0.95
TRIM39-207ENST00000428404 THOC2Q8NI27 1593 aaKnown RBP20.99■□□□□ 0.95
TRIM39-207ENST00000428404 FGD5Q6ZNL6 1462 aa20.95■□□□□ 0.94
TRIM39-207ENST00000428404 POLA1P09884 1462 aaPredicted RBP20.93■□□□□ 0.94
TRIM39-207ENST00000428404 SOGA1O94964 1423 aa20.87■□□□□ 0.93
TRIM39-207ENST00000428404 CUX2O14529 1486 aa20.86■□□□□ 0.93
TRIM39-207ENST00000428404 RAD54L2Q9Y4B4 1467 aa20.84■□□□□ 0.93
TRIM39-207ENST00000428404 ABCA10Q8WWZ4 1543 aa20.8■□□□□ 0.92
TRIM39-207ENST00000428404 TARBP1Q13395 1621 aaKnown RBP20.78■□□□□ 0.92
TRIM39-207ENST00000428404 IFT140Q96RY7 1462 aa20.78■□□□□ 0.92
TRIM39-207ENST00000428404 RUSC2Q8N2Y8 1516 aa20.75■□□□□ 0.91
TRIM39-207ENST00000428404 EEA1Q15075 1411 aa20.74■□□□□ 0.91
TRIM39-207ENST00000428404 KIF27Q86VH2 1401 aa20.73■□□□□ 0.91
TRIM39-207ENST00000428404 WDR97A6NE52 1622 aa20.71■□□□□ 0.91
TRIM39-207ENST00000428404 TDRD9Q8NDG6 1382 aaKnown RBP20.69■□□□□ 0.9
TRIM39-207ENST00000428404 FAM9AQ8IZU1 332 aaPredicted RBP20.68■□□□□ 0.9
TRIM39-207ENST00000428404 CSRNP3Q8WYN3 585 aa20.66■□□□□ 0.9
TRIM39-207ENST00000428404 ZNF608Q9ULD9 1512 aaPredicted RBP20.65■□□□□ 0.9
TRIM39-207ENST00000428404 IGF1RP08069 1367 aa20.64■□□□□ 0.89
TRIM39-207ENST00000428404 ABCA5Q8WWZ7 1642 aa20.63■□□□□ 0.89
TRIM39-207ENST00000428404 AQRO60306 1485 aaKnown RBP eCLIP20.62■□□□□ 0.894e-6■■■■■ 31
TRIM39-207ENST00000428404 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
TRIM39-207ENST00000428404 ERICH3Q5RHP9 1530 aa20.54■□□□□ 0.88
TRIM39-207ENST00000428404 GRIN2BQ13224 1484 aa20.53■□□□□ 0.88
TRIM39-207ENST00000428404 EIF4G3O43432 1585 aaKnown RBP20.53■□□□□ 0.88
TRIM39-207ENST00000428404 PRXQ9BXM0 1461 aa20.52■□□□□ 0.88
TRIM39-207ENST00000428404 CARMIL1Q5VZK9 1371 aa20.49■□□□□ 0.87
TRIM39-207ENST00000428404 PBRM1Q86U86 1689 aa20.45■□□□□ 0.86
TRIM39-207ENST00000428404 LOC105371045A0A1W2PR82 267 aa20.45■□□□□ 0.86
TRIM39-207ENST00000428404 KIF21BO75037 1637 aa20.45■□□□□ 0.86
TRIM39-207ENST00000428404 CUL7Q14999 1698 aa20.42■□□□□ 0.86
TRIM39-207ENST00000428404 FHAD1B1AJZ9 1412 aa20.42■□□□□ 0.86
TRIM39-207ENST00000428404 SNAPC4Q5SXM2 1469 aa20.41■□□□□ 0.86
TRIM39-207ENST00000428404 MAGI1Q96QZ7 1491 aaPredicted RBP20.41■□□□□ 0.86
TRIM39-207ENST00000428404 RAPGEF2Q9Y4G8 1499 aa20.41■□□□□ 0.86
TRIM39-207ENST00000428404 GOLGA3Q08378 1498 aa20.38■□□□□ 0.85
TRIM39-207ENST00000428404 ADAMTS12P58397 1594 aa20.38■□□□□ 0.85
TRIM39-207ENST00000428404 SYNJ2O15056 1496 aa20.33■□□□□ 0.85
TRIM39-207ENST00000428404 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.85
TRIM39-207ENST00000428404 UBTFP17480 764 aaKnown RBP20.29■□□□□ 0.84
TRIM39-207ENST00000428404 TNIKQ9UKE5 1360 aa20.29■□□□□ 0.84
TRIM39-207ENST00000428404 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
TRIM39-207ENST00000428404 GRIN2AQ12879 1464 aa20.27■□□□□ 0.84
TRIM39-207ENST00000428404 FBLN2P98095 1184 aa20.22■□□□□ 0.83
TRIM39-207ENST00000428404 NUP160Q12769 1436 aa20.19■□□□□ 0.82
TRIM39-207ENST00000428404 KIAA0586Q9BVV6 1533 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms