RNA–Protein interactions for RNA: ENST00000427414.2

SH3D19-204, Transcript of SH3 domain containing 19, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SH3D19, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D19-204ENST00000427414 NISCHQ9Y2I1 1504 aa19.3■□□□□ 0.68
SH3D19-204ENST00000427414 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
SH3D19-204ENST00000427414 ZCCHC6Q5VYS8 1495 aaKnown RBP16.25■□□□□ 0.19
SH3D19-204ENST00000427414 DCAF1Q9Y4B6 1507 aa16.18■□□□□ 0.18
SH3D19-204ENST00000427414 MYO15BQ96JP2 1530 aa16.03■□□□□ 0.16
SH3D19-204ENST00000427414 NACADO15069 1562 aa15.77■□□□□ 0.11
SH3D19-204ENST00000427414 ABCC9O60706 1549 aa15.59■□□□□ 0.09
SH3D19-204ENST00000427414 RB1CC1Q8TDY2 1594 aa15.56■□□□□ 0.08
SH3D19-204ENST00000427414 DCAF8L2P0C7V8 631 aa15.44■□□□□ 0.06
SH3D19-204ENST00000427414 SHROOM4Q9ULL8 1493 aa15.31■□□□□ 0.04
SH3D19-204ENST00000427414 SCRIBQ14160 1630 aa15.29■□□□□ 0.04
SH3D19-204ENST00000427414 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
SH3D19-204ENST00000427414 BICRAQ9NZM4 1560 aa15□□□□□ -0.01
SH3D19-204ENST00000427414 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
SH3D19-204ENST00000427414 RSF1Q96T23 1441 aaPredicted RBP14.9□□□□□ -0.02
SH3D19-204ENST00000427414 SMARCA4P51532 1647 aa14.82□□□□□ -0.04
SH3D19-204ENST00000427414 CECR2Q9BXF3 1484 aa14.8□□□□□ -0.04
SH3D19-204ENST00000427414 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
SH3D19-204ENST00000427414 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
SH3D19-204ENST00000427414 SUPT5HO00267 1087 aaKnown RBP14.79□□□□□ -0.04
SH3D19-204ENST00000427414 TOP2AP11388 1531 aaKnown RBP14.66□□□□□ -0.06
SH3D19-204ENST00000427414 WIZO95785 1651 aa14.66□□□□□ -0.06
SH3D19-204ENST00000427414 SMARCA2P51531 1590 aa14.64□□□□□ -0.07
SH3D19-204ENST00000427414 PABPN1Q86U42 306 aaKnown RBP eCLIP14.59□□□□□ -0.07
SH3D19-204ENST00000427414 EIF4G1Q04637 1599 aaKnown RBP14.53□□□□□ -0.08
SH3D19-204ENST00000427414 ATAD2BQ9ULI0 1458 aa14.53□□□□□ -0.08
SH3D19-204ENST00000427414 HMGXB3Q12766 1538 aa14.53□□□□□ -0.08
SH3D19-204ENST00000427414 NCAPD3P42695 1498 aa14.49□□□□□ -0.09
SH3D19-204ENST00000427414 BAZ1BQ9UIG0 1483 aaKnown RBP14.43□□□□□ -0.1
SH3D19-204ENST00000427414 CCDC88BA6NC98 1476 aa14.4□□□□□ -0.1
SH3D19-204ENST00000427414 CHIC1Q5VXU3 224 aa14.37□□□□□ -0.11
SH3D19-204ENST00000427414 CC2D2AQ9P2K1 1620 aa14.27□□□□□ -0.12
SH3D19-204ENST00000427414 PRDM2Q13029 1718 aa14.22□□□□□ -0.13
SH3D19-204ENST00000427414 CFTRP13569 1480 aa14.14□□□□□ -0.15
SH3D19-204ENST00000427414 TRIM41Q8WV44 630 aa14.07□□□□□ -0.16
SH3D19-204ENST00000427414 EEA1Q15075 1411 aa14.05□□□□□ -0.16
SH3D19-204ENST00000427414 BIVM-ERCC5R4GMW8 1640 aa14.04□□□□□ -0.16
SH3D19-204ENST00000427414 CADPSQ9ULU8 1353 aa14.03□□□□□ -0.16
SH3D19-204ENST00000427414 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.16
SH3D19-204ENST00000427414 LAMC3Q9Y6N6 1575 aa14.02□□□□□ -0.16
SH3D19-204ENST00000427414 TOP2BQ02880 1626 aa14.01□□□□□ -0.17
SH3D19-204ENST00000427414 ABCC8Q09428 1581 aa13.98□□□□□ -0.17
SH3D19-204ENST00000427414 SYNJ1O43426 1573 aa13.94□□□□□ -0.18
SH3D19-204ENST00000427414 CUX1P39880 1505 aa13.86□□□□□ -0.19
SH3D19-204ENST00000427414 FANCD2Q9BXW9 1451 aa13.84□□□□□ -0.19
SH3D19-204ENST00000427414 PDS5BQ9NTI5 1447 aa13.83□□□□□ -0.19
SH3D19-204ENST00000427414 DNMBPQ6XZF7 1577 aa13.83□□□□□ -0.2
SH3D19-204ENST00000427414 KIF21BO75037 1637 aa13.81□□□□□ -0.2
SH3D19-204ENST00000427414 HRCP23327 699 aa13.78□□□□□ -0.2
SH3D19-204ENST00000427414 CEP164Q9UPV0 1460 aa13.78□□□□□ -0.2
SH3D19-204ENST00000427414 ERICH3Q5RHP9 1530 aa13.73□□□□□ -0.21
SH3D19-204ENST00000427414 SOGA1O94964 1423 aa13.73□□□□□ -0.21
SH3D19-204ENST00000427414 CSRNP3Q8WYN3 585 aa13.73□□□□□ -0.21
SH3D19-204ENST00000427414 TOPBP1Q92547 1522 aa13.72□□□□□ -0.21
SH3D19-204ENST00000427414 KIF27Q86VH2 1401 aa13.72□□□□□ -0.21
SH3D19-204ENST00000427414 GOLGA3Q08378 1498 aa13.7□□□□□ -0.22
SH3D19-204ENST00000427414 WDR97A6NE52 1622 aa13.7□□□□□ -0.22
SH3D19-204ENST00000427414 NESP48681 1621 aa13.7□□□□□ -0.22
SH3D19-204ENST00000427414 TNIKQ9UKE5 1360 aa13.69□□□□□ -0.22
SH3D19-204ENST00000427414 ABCA10Q8WWZ4 1543 aa13.68□□□□□ -0.22
SH3D19-204ENST00000427414 FGD5Q6ZNL6 1462 aa13.68□□□□□ -0.22
SH3D19-204ENST00000427414 KIF21AQ7Z4S6 1674 aa13.68□□□□□ -0.22
SH3D19-204ENST00000427414 PRXQ9BXM0 1461 aa13.66□□□□□ -0.22
SH3D19-204ENST00000427414 URB2Q14146 1524 aaKnown RBP13.65□□□□□ -0.22
SH3D19-204ENST00000427414 MRC2Q9UBG0 1479 aa13.64□□□□□ -0.23
SH3D19-204ENST00000427414 RUSC2Q8N2Y8 1516 aa13.64□□□□□ -0.23
SH3D19-204ENST00000427414 POLA1P09884 1462 aaPredicted RBP13.63□□□□□ -0.23
SH3D19-204ENST00000427414 LOC105371045A0A1W2PR82 267 aa13.62□□□□□ -0.23
SH3D19-204ENST00000427414 WDR62O43379 1518 aa13.62□□□□□ -0.23
SH3D19-204ENST00000427414 CUL7Q14999 1698 aa13.6□□□□□ -0.23
SH3D19-204ENST00000427414 DNAJC5BQ9UF47 199 aa13.59□□□□□ -0.23
SH3D19-204ENST00000427414 ABCA5Q8WWZ7 1642 aa13.57□□□□□ -0.24
SH3D19-204ENST00000427414 PCGF6Q9BYE7 350 aa13.57□□□□□ -0.24
SH3D19-204ENST00000427414 CUX2O14529 1486 aa13.57□□□□□ -0.24
SH3D19-204ENST00000427414 TARBP1Q13395 1621 aaKnown RBP13.56□□□□□ -0.24
SH3D19-204ENST00000427414 FAM9AQ8IZU1 332 aaPredicted RBP13.56□□□□□ -0.24
SH3D19-204ENST00000427414 IGF1RP08069 1367 aa13.53□□□□□ -0.24
SH3D19-204ENST00000427414 THOC2Q8NI27 1593 aaKnown RBP13.52□□□□□ -0.24
SH3D19-204ENST00000427414 IFT140Q96RY7 1462 aa13.52□□□□□ -0.25
SH3D19-204ENST00000427414 RAPGEF2Q9Y4G8 1499 aa13.51□□□□□ -0.25
SH3D19-204ENST00000427414 CEP162Q5TB80 1403 aa13.51□□□□□ -0.25
SH3D19-204ENST00000427414 PPARGC1BQ86YN6 1023 aaKnown RBP13.5□□□□□ -0.25
SH3D19-204ENST00000427414 RAD54L2Q9Y4B4 1467 aa13.46□□□□□ -0.25
SH3D19-204ENST00000427414 CARMIL1Q5VZK9 1371 aa13.46□□□□□ -0.26
SH3D19-204ENST00000427414 GAPVD1Q14C86 1478 aa13.45□□□□□ -0.26
SH3D19-204ENST00000427414 ERCC6Q03468 1493 aa13.44□□□□□ -0.26
SH3D19-204ENST00000427414 PBRM1Q86U86 1689 aa13.44□□□□□ -0.26
SH3D19-204ENST00000427414 UBTFP17480 764 aaKnown RBP13.41□□□□□ -0.26
SH3D19-204ENST00000427414 CLIP1P30622 1438 aa13.4□□□□□ -0.26
SH3D19-204ENST00000427414 CTTNBP2Q8WZ74 1663 aa13.4□□□□□ -0.26
SH3D19-204ENST00000427414 GRIN2BQ13224 1484 aa13.39□□□□□ -0.27
SH3D19-204ENST00000427414 EFCAB5A4FU69 1503 aa13.38□□□□□ -0.27
SH3D19-204ENST00000427414 FHAD1B1AJZ9 1412 aa13.37□□□□□ -0.27
SH3D19-204ENST00000427414 ADAMTS12P58397 1594 aa13.36□□□□□ -0.27
SH3D19-204ENST00000427414 VPS8Q8N3P4 1428 aa13.36□□□□□ -0.27
SH3D19-204ENST00000427414 MAGI1Q96QZ7 1491 aaPredicted RBP13.33□□□□□ -0.28
SH3D19-204ENST00000427414 MAP3K1Q13233 1512 aa13.32□□□□□ -0.28
SH3D19-204ENST00000427414 EIF4G3O43432 1585 aaKnown RBP13.32□□□□□ -0.28
SH3D19-204ENST00000427414 TDRD9Q8NDG6 1382 aaKnown RBP13.3□□□□□ -0.28
SH3D19-204ENST00000427414 TRIM26Q12899 539 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms