RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 NISCHQ9Y2I1 1504 aa21.02■□□□□ 0.96
HMGB4-201ENST00000425537 CCDC180Q9P1Z9 1646 aa18.57■□□□□ 0.56
HMGB4-201ENST00000425537 ABCC9O60706 1549 aa18.2■□□□□ 0.5
HMGB4-201ENST00000425537 AEBP2Q6ZN18 517 aaPredicted RBP18.01■□□□□ 0.47
HMGB4-201ENST00000425537 ZCCHC6Q5VYS8 1495 aaKnown RBP17.67■□□□□ 0.42
HMGB4-201ENST00000425537 DCAF8L2P0C7V8 631 aa17.64■□□□□ 0.41
HMGB4-201ENST00000425537 DCAF1Q9Y4B6 1507 aa17.47■□□□□ 0.39
HMGB4-201ENST00000425537 RB1CC1Q8TDY2 1594 aa17.43■□□□□ 0.38
HMGB4-201ENST00000425537 NACADO15069 1562 aa17.39■□□□□ 0.37
HMGB4-201ENST00000425537 MYO15BQ96JP2 1530 aa17.24■□□□□ 0.35
HMGB4-201ENST00000425537 UNC13AQ9UPW8 1703 aa17.16■□□□□ 0.34
HMGB4-201ENST00000425537 SCRIBQ14160 1630 aa17.14■□□□□ 0.33
HMGB4-201ENST00000425537 CHIC1Q5VXU3 224 aa17.12■□□□□ 0.33
HMGB4-201ENST00000425537 SHROOM4Q9ULL8 1493 aa17.1■□□□□ 0.33
HMGB4-201ENST00000425537 PABPN1Q86U42 306 aaKnown RBP eCLIP17.04■□□□□ 0.32
HMGB4-201ENST00000425537 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
HMGB4-201ENST00000425537 SUPT5HO00267 1087 aaKnown RBP16.57■□□□□ 0.24
HMGB4-201ENST00000425537 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
HMGB4-201ENST00000425537 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
HMGB4-201ENST00000425537 CECR2Q9BXF3 1484 aa16.43■□□□□ 0.22
HMGB4-201ENST00000425537 CC2D2AQ9P2K1 1620 aa16.41■□□□□ 0.22
HMGB4-201ENST00000425537 SMARCA4P51532 1647 aa16.3■□□□□ 0.2
HMGB4-201ENST00000425537 RSF1Q96T23 1441 aaPredicted RBP16.3■□□□□ 0.2
HMGB4-201ENST00000425537 BAZ1AQ9NRL2 1556 aaPredicted RBP16.28■□□□□ 0.2
HMGB4-201ENST00000425537 MROH2BQ7Z745 1585 aa16.26■□□□□ 0.19
HMGB4-201ENST00000425537 ATAD2BQ9ULI0 1458 aa16.14■□□□□ 0.17
HMGB4-201ENST00000425537 WIZO95785 1651 aa16.14■□□□□ 0.17
HMGB4-201ENST00000425537 SMARCA2P51531 1590 aa16.09■□□□□ 0.17
HMGB4-201ENST00000425537 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
HMGB4-201ENST00000425537 NCAPD3P42695 1498 aa16.03■□□□□ 0.16
HMGB4-201ENST00000425537 PEG3Q9GZU2 1588 aa16.03■□□□□ 0.16
HMGB4-201ENST00000425537 HMGXB3Q12766 1538 aa16■□□□□ 0.15
HMGB4-201ENST00000425537 TOP2AP11388 1531 aaKnown RBP15.98■□□□□ 0.15
HMGB4-201ENST00000425537 NESP48681 1621 aa15.81■□□□□ 0.12
HMGB4-201ENST00000425537 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
HMGB4-201ENST00000425537 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
HMGB4-201ENST00000425537 LAMC3Q9Y6N6 1575 aa15.62■□□□□ 0.09
HMGB4-201ENST00000425537 ERCC6Q03468 1493 aa15.62■□□□□ 0.09
HMGB4-201ENST00000425537 KIF21AQ7Z4S6 1674 aa15.62■□□□□ 0.09
HMGB4-201ENST00000425537 CADPSQ9ULU8 1353 aa15.61■□□□□ 0.09
HMGB4-201ENST00000425537 CFTRP13569 1480 aa15.54■□□□□ 0.08
HMGB4-201ENST00000425537 PRDM2Q13029 1718 aa15.51■□□□□ 0.07
HMGB4-201ENST00000425537 FANCD2Q9BXW9 1451 aa15.5■□□□□ 0.07
HMGB4-201ENST00000425537 PDS5BQ9NTI5 1447 aa15.5■□□□□ 0.07
HMGB4-201ENST00000425537 THOC2Q8NI27 1593 aaKnown RBP15.48■□□□□ 0.07
HMGB4-201ENST00000425537 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.07
HMGB4-201ENST00000425537 ABCC8Q09428 1581 aa15.41■□□□□ 0.06
HMGB4-201ENST00000425537 MRC2Q9UBG0 1479 aa15.4■□□□□ 0.06
HMGB4-201ENST00000425537 WRNQ14191 1432 aaPredicted RBP eCLIP15.4■□□□□ 0.06
HMGB4-201ENST00000425537 URB2Q14146 1524 aaKnown RBP15.37■□□□□ 0.05
HMGB4-201ENST00000425537 EEA1Q15075 1411 aa15.35■□□□□ 0.05
HMGB4-201ENST00000425537 WDR62O43379 1518 aa15.33■□□□□ 0.04
HMGB4-201ENST00000425537 SENP3Q9H4L4 574 aaPredicted RBP15.32■□□□□ 0.04
HMGB4-201ENST00000425537 CUX2O14529 1486 aa15.29■□□□□ 0.04
HMGB4-201ENST00000425537 TOPBP1Q92547 1522 aa15.27■□□□□ 0.04
HMGB4-201ENST00000425537 TOP2BQ02880 1626 aa15.27■□□□□ 0.03
HMGB4-201ENST00000425537 BIVM-ERCC5R4GMW8 1640 aa15.26■□□□□ 0.03
HMGB4-201ENST00000425537 SYNJ1O43426 1573 aa15.26■□□□□ 0.03
HMGB4-201ENST00000425537 DNMBPQ6XZF7 1577 aa15.25■□□□□ 0.03
HMGB4-201ENST00000425537 FAM9AQ8IZU1 332 aaPredicted RBP15.25■□□□□ 0.03
HMGB4-201ENST00000425537 CUX1P39880 1505 aa15.24■□□□□ 0.03
HMGB4-201ENST00000425537 LOC105371045A0A1W2PR82 267 aa15.24■□□□□ 0.03
HMGB4-201ENST00000425537 FGD5Q6ZNL6 1462 aa15.16■□□□□ 0.02
HMGB4-201ENST00000425537 RAD54L2Q9Y4B4 1467 aa15.15■□□□□ 0.02
HMGB4-201ENST00000425537 CSRNP3Q8WYN3 585 aa15.15■□□□□ 0.02
HMGB4-201ENST00000425537 POLA1P09884 1462 aaPredicted RBP15.14■□□□□ 0.01
HMGB4-201ENST00000425537 PHF23Q9BUL5 403 aaPredicted RBP15.14■□□□□ 0.01
HMGB4-201ENST00000425537 SOGA1O94964 1423 aa15.14■□□□□ 0.01
HMGB4-201ENST00000425537 ZNF608Q9ULD9 1512 aaPredicted RBP15.12■□□□□ 0.01
HMGB4-201ENST00000425537 TARBP1Q13395 1621 aaKnown RBP15.09■□□□□ 0.01
HMGB4-201ENST00000425537 IFT140Q96RY7 1462 aa15.08■□□□□ 0.01
HMGB4-201ENST00000425537 GOLGA3Q08378 1498 aa15.08■□□□□ 0
HMGB4-201ENST00000425537 KIF21BO75037 1637 aa15.07■□□□□ 0
HMGB4-201ENST00000425537 EIF4G3O43432 1585 aaKnown RBP15.06■□□□□ 0
HMGB4-201ENST00000425537 KIF27Q86VH2 1401 aa15.04■□□□□ -0
HMGB4-201ENST00000425537 WDR97A6NE52 1622 aa15.03■□□□□ -0
HMGB4-201ENST00000425537 RUSC2Q8N2Y8 1516 aa15.03■□□□□ -0
HMGB4-201ENST00000425537 AQRO60306 1485 aaKnown RBP eCLIP15.03■□□□□ -0
HMGB4-201ENST00000425537 TDRD9Q8NDG6 1382 aaKnown RBP15.03■□□□□ -0
HMGB4-201ENST00000425537 TNIKQ9UKE5 1360 aa15.03■□□□□ -0
HMGB4-201ENST00000425537 UBTFP17480 764 aaKnown RBP14.97□□□□□ -0.01
HMGB4-201ENST00000425537 ERICH3Q5RHP9 1530 aa14.97□□□□□ -0.01
HMGB4-201ENST00000425537 EHMT2Q96KQ7 1210 aa14.96□□□□□ -0.01
HMGB4-201ENST00000425537 PBRM1Q86U86 1689 aa14.94□□□□□ -0.02
HMGB4-201ENST00000425537 ABCA10Q8WWZ4 1543 aa14.94□□□□□ -0.02
HMGB4-201ENST00000425537 ABCA5Q8WWZ7 1642 aa14.92□□□□□ -0.02
HMGB4-201ENST00000425537 CEP162Q5TB80 1403 aa14.92□□□□□ -0.02
HMGB4-201ENST00000425537 GAPVD1Q14C86 1478 aa14.9□□□□□ -0.02
HMGB4-201ENST00000425537 SNAPC4Q5SXM2 1469 aa14.9□□□□□ -0.02
HMGB4-201ENST00000425537 PRXQ9BXM0 1461 aa14.9□□□□□ -0.02
HMGB4-201ENST00000425537 CHD1O14646 1710 aa14.88□□□□□ -0.03
HMGB4-201ENST00000425537 FBLN2P98095 1184 aa14.86□□□□□ -0.03
HMGB4-201ENST00000425537 GRIN2BQ13224 1484 aa14.86□□□□□ -0.03
HMGB4-201ENST00000425537 RAPGEF2Q9Y4G8 1499 aa14.86□□□□□ -0.03
HMGB4-201ENST00000425537 TRIM26Q12899 539 aaPredicted RBP14.81□□□□□ -0.04
HMGB4-201ENST00000425537 IGF1RP08069 1367 aa14.81□□□□□ -0.04
HMGB4-201ENST00000425537 CLIP1P30622 1438 aa14.81□□□□□ -0.04
HMGB4-201ENST00000425537 CUL7Q14999 1698 aa14.81□□□□□ -0.04
HMGB4-201ENST00000425537 ADAMTS12P58397 1594 aa14.8□□□□□ -0.04
HMGB4-201ENST00000425537 CARMIL1Q5VZK9 1371 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms