RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 NISCHQ9Y2I1 1504 aa28.89■■■□□ 2.21
LINC00539-202ENST00000423575 CCDC180Q9P1Z9 1646 aa25.48■■□□□ 1.67
LINC00539-202ENST00000423575 ABCC9O60706 1549 aa24.69■■□□□ 1.54
LINC00539-202ENST00000423575 ZCCHC6Q5VYS8 1495 aaKnown RBP24.15■■□□□ 1.46
LINC00539-202ENST00000423575 DCAF8L2P0C7V8 631 aa23.97■■□□□ 1.43
LINC00539-202ENST00000423575 DCAF1Q9Y4B6 1507 aa23.9■■□□□ 1.42
LINC00539-202ENST00000423575 NACADO15069 1562 aa23.9■■□□□ 1.42
LINC00539-202ENST00000423575 MYO15BQ96JP2 1530 aa23.87■■□□□ 1.41
LINC00539-202ENST00000423575 RB1CC1Q8TDY2 1594 aa23.84■■□□□ 1.41
LINC00539-202ENST00000423575 SCRIBQ14160 1630 aa23.33■■□□□ 1.33
LINC00539-202ENST00000423575 UNC13AQ9UPW8 1703 aa23.27■■□□□ 1.32
LINC00539-202ENST00000423575 BICRAQ9NZM4 1560 aa23.14■■□□□ 1.3
LINC00539-202ENST00000423575 PABPN1Q86U42 306 aaKnown RBP eCLIP23.12■■□□□ 1.29
LINC00539-202ENST00000423575 SHROOM4Q9ULL8 1493 aa23.05■■□□□ 1.28
LINC00539-202ENST00000423575 EIF4G1Q04637 1599 aaKnown RBP22.5■■□□□ 1.19
LINC00539-202ENST00000423575 CECR2Q9BXF3 1484 aa22.49■■□□□ 1.19
LINC00539-202ENST00000423575 DNAJC5BQ9UF47 199 aa22.37■■□□□ 1.17
LINC00539-202ENST00000423575 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
LINC00539-202ENST00000423575 SMARCA4P51532 1647 aa22.33■■□□□ 1.17
LINC00539-202ENST00000423575 CC2D2AQ9P2K1 1620 aa22.31■■□□□ 1.16
LINC00539-202ENST00000423575 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
LINC00539-202ENST00000423575 ATAD2BQ9ULI0 1458 aa22.15■■□□□ 1.14
LINC00539-202ENST00000423575 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
LINC00539-202ENST00000423575 PEG3Q9GZU2 1588 aa22.11■■□□□ 1.13
LINC00539-202ENST00000423575 SMARCA2P51531 1590 aa22.1■■□□□ 1.13
LINC00539-202ENST00000423575 NCAPD3P42695 1498 aa22.07■■□□□ 1.12
LINC00539-202ENST00000423575 WIZO95785 1651 aa22.02■■□□□ 1.12
LINC00539-202ENST00000423575 HMGXB3Q12766 1538 aa22■■□□□ 1.11
LINC00539-202ENST00000423575 BAZ1BQ9UIG0 1483 aaKnown RBP21.97■■□□□ 1.11
LINC00539-202ENST00000423575 TOP2AP11388 1531 aaKnown RBP21.84■■□□□ 1.09
LINC00539-202ENST00000423575 SUPT5HO00267 1087 aaKnown RBP21.82■■□□□ 1.08
LINC00539-202ENST00000423575 CCDC88BA6NC98 1476 aa21.58■■□□□ 1.04
LINC00539-202ENST00000423575 NESP48681 1621 aa21.47■■□□□ 1.03
LINC00539-202ENST00000423575 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
LINC00539-202ENST00000423575 LAMC3Q9Y6N6 1575 aa21.41■■□□□ 1.02
LINC00539-202ENST00000423575 CFTRP13569 1480 aa21.39■■□□□ 1.02
LINC00539-202ENST00000423575 PDS5BQ9NTI5 1447 aa21.26■□□□□ 0.99
LINC00539-202ENST00000423575 ERCC6Q03468 1493 aa21.22■□□□□ 0.99
LINC00539-202ENST00000423575 FANCD2Q9BXW9 1451 aa21.21■□□□□ 0.99
LINC00539-202ENST00000423575 PRDM2Q13029 1718 aa21.18■□□□□ 0.98
LINC00539-202ENST00000423575 KIF21AQ7Z4S6 1674 aa21.16■□□□□ 0.98
LINC00539-202ENST00000423575 CEP164Q9UPV0 1460 aa21.14■□□□□ 0.98
LINC00539-202ENST00000423575 MRC2Q9UBG0 1479 aa21.05■□□□□ 0.96
LINC00539-202ENST00000423575 THOC2Q8NI27 1593 aaKnown RBP21.05■□□□□ 0.96
LINC00539-202ENST00000423575 URB2Q14146 1524 aaKnown RBP20.99■□□□□ 0.95
LINC00539-202ENST00000423575 WDR62O43379 1518 aa20.97■□□□□ 0.95
LINC00539-202ENST00000423575 TOPBP1Q92547 1522 aa20.91■□□□□ 0.94
LINC00539-202ENST00000423575 DNMBPQ6XZF7 1577 aa20.9■□□□□ 0.94
LINC00539-202ENST00000423575 ABCC8Q09428 1581 aa20.89■□□□□ 0.94
LINC00539-202ENST00000423575 CUX1P39880 1505 aa20.88■□□□□ 0.93
LINC00539-202ENST00000423575 CUX2O14529 1486 aa20.88■□□□□ 0.93
LINC00539-202ENST00000423575 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
LINC00539-202ENST00000423575 SYNJ1O43426 1573 aa20.8■□□□□ 0.92
LINC00539-202ENST00000423575 POLA1P09884 1462 aaPredicted RBP20.76■□□□□ 0.91
LINC00539-202ENST00000423575 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
LINC00539-202ENST00000423575 FGD5Q6ZNL6 1462 aa20.75■□□□□ 0.91
LINC00539-202ENST00000423575 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
LINC00539-202ENST00000423575 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
LINC00539-202ENST00000423575 RAD54L2Q9Y4B4 1467 aa20.68■□□□□ 0.9
LINC00539-202ENST00000423575 SOGA1O94964 1423 aa20.66■□□□□ 0.9
LINC00539-202ENST00000423575 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.9
LINC00539-202ENST00000423575 ZNF608Q9ULD9 1512 aaPredicted RBP20.59■□□□□ 0.89
LINC00539-202ENST00000423575 CHIC1Q5VXU3 224 aa20.57■□□□□ 0.88
LINC00539-202ENST00000423575 TRIM41Q8WV44 630 aa20.57■□□□□ 0.88
LINC00539-202ENST00000423575 ABCA10Q8WWZ4 1543 aa20.57■□□□□ 0.88
LINC00539-202ENST00000423575 WDR97A6NE52 1622 aa20.54■□□□□ 0.88
LINC00539-202ENST00000423575 TDRD9Q8NDG6 1382 aaKnown RBP20.53■□□□□ 0.88
LINC00539-202ENST00000423575 EIF4G3O43432 1585 aaKnown RBP20.51■□□□□ 0.87
LINC00539-202ENST00000423575 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.87
LINC00539-202ENST00000423575 ABCA5Q8WWZ7 1642 aa20.45■□□□□ 0.86
LINC00539-202ENST00000423575 GAPVD1Q14C86 1478 aa20.43■□□□□ 0.86
LINC00539-202ENST00000423575 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
LINC00539-202ENST00000423575 GRIN2BQ13224 1484 aa20.38■□□□□ 0.85
LINC00539-202ENST00000423575 RUSC2Q8N2Y8 1516 aa20.34■□□□□ 0.85
LINC00539-202ENST00000423575 PBRM1Q86U86 1689 aa20.33■□□□□ 0.85
LINC00539-202ENST00000423575 SNAPC4Q5SXM2 1469 aa20.33■□□□□ 0.85
LINC00539-202ENST00000423575 ERICH3Q5RHP9 1530 aa20.31■□□□□ 0.84
LINC00539-202ENST00000423575 IGF1RP08069 1367 aa20.29■□□□□ 0.84
LINC00539-202ENST00000423575 MAGI1Q96QZ7 1491 aaPredicted RBP20.29■□□□□ 0.84
LINC00539-202ENST00000423575 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
LINC00539-202ENST00000423575 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
LINC00539-202ENST00000423575 EEA1Q15075 1411 aa20.21■□□□□ 0.83
LINC00539-202ENST00000423575 SYNJ2O15056 1496 aa20.21■□□□□ 0.83
LINC00539-202ENST00000423575 FAM9AQ8IZU1 332 aaPredicted RBP20.17■□□□□ 0.82
LINC00539-202ENST00000423575 CUL7Q14999 1698 aa20.16■□□□□ 0.82
LINC00539-202ENST00000423575 FBLN2P98095 1184 aa20.16■□□□□ 0.82
LINC00539-202ENST00000423575 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
LINC00539-202ENST00000423575 CHMP7Q8WUX9 453 aaPredicted RBP20.15■□□□□ 0.82
LINC00539-202ENST00000423575 CHD1O14646 1710 aa20.14■□□□□ 0.81
LINC00539-202ENST00000423575 CSRNP3Q8WYN3 585 aa20.14■□□□□ 0.81
LINC00539-202ENST00000423575 GRIN2AQ12879 1464 aa20.13■□□□□ 0.81
LINC00539-202ENST00000423575 PRXQ9BXM0 1461 aa20.11■□□□□ 0.81
LINC00539-202ENST00000423575 RAPGEF2Q9Y4G8 1499 aa20.07■□□□□ 0.8
LINC00539-202ENST00000423575 OSCARQ8IYS5 282 aa20.05■□□□□ 0.8
LINC00539-202ENST00000423575 NUP160Q12769 1436 aa20.04■□□□□ 0.8
LINC00539-202ENST00000423575 CEP170Q5SW79 1584 aa20.02■□□□□ 0.8
LINC00539-202ENST00000423575 KIF21BO75037 1637 aa19.98■□□□□ 0.79
LINC00539-202ENST00000423575 CLASP1Q7Z460 1538 aa19.98■□□□□ 0.79
LINC00539-202ENST00000423575 GOLGA3Q08378 1498 aa19.91■□□□□ 0.78
LINC00539-202ENST00000423575 KIAA0586Q9BVV6 1533 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms