RNA–Protein interactions for RNA: ENST00000422379.2

HPS4-204, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 1,942 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-204ENST00000422379 NISCHQ9Y2I1 1504 aa20.96■□□□□ 0.95
HPS4-204ENST00000422379 CCDC180Q9P1Z9 1646 aa18.32■□□□□ 0.52
HPS4-204ENST00000422379 ABCC9O60706 1549 aa17.62■□□□□ 0.41
HPS4-204ENST00000422379 ZCCHC6Q5VYS8 1495 aaKnown RBP17.57■□□□□ 0.4
HPS4-204ENST00000422379 DCAF8L2P0C7V8 631 aa17.34■□□□□ 0.37
HPS4-204ENST00000422379 DCAF1Q9Y4B6 1507 aa17.29■□□□□ 0.36
HPS4-204ENST00000422379 MYO15BQ96JP2 1530 aa17.17■□□□□ 0.34
HPS4-204ENST00000422379 NACADO15069 1562 aa17.13■□□□□ 0.33
HPS4-204ENST00000422379 RB1CC1Q8TDY2 1594 aa17.03■□□□□ 0.32
HPS4-204ENST00000422379 SHROOM4Q9ULL8 1493 aa16.96■□□□□ 0.31
HPS4-204ENST00000422379 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
HPS4-204ENST00000422379 UNC13AQ9UPW8 1703 aa16.73■□□□□ 0.27
HPS4-204ENST00000422379 BICRAQ9NZM4 1560 aa16.63■□□□□ 0.25
HPS4-204ENST00000422379 CHIC1Q5VXU3 224 aa16.62■□□□□ 0.25
HPS4-204ENST00000422379 PABPN1Q86U42 306 aaKnown RBP eCLIP16.58■□□□□ 0.25
HPS4-204ENST00000422379 CECR2Q9BXF3 1484 aa16.36■□□□□ 0.21
HPS4-204ENST00000422379 AEBP2Q6ZN18 517 aaPredicted RBP16.33■□□□□ 0.2
HPS4-204ENST00000422379 MROH2BQ7Z745 1585 aa16.22■□□□□ 0.19
HPS4-204ENST00000422379 RSF1Q96T23 1441 aaPredicted RBP16.2■□□□□ 0.18
HPS4-204ENST00000422379 BAZ1AQ9NRL2 1556 aaPredicted RBP16.16■□□□□ 0.18
HPS4-204ENST00000422379 SUPT5HO00267 1087 aaKnown RBP16.15■□□□□ 0.18
HPS4-204ENST00000422379 SMARCA4P51532 1647 aa16.15■□□□□ 0.18
HPS4-204ENST00000422379 EIF4G1Q04637 1599 aaKnown RBP16.1■□□□□ 0.17
HPS4-204ENST00000422379 WIZO95785 1651 aa16.06■□□□□ 0.16
HPS4-204ENST00000422379 PEG3Q9GZU2 1588 aa15.97■□□□□ 0.15
HPS4-204ENST00000422379 ATAD2BQ9ULI0 1458 aa15.96■□□□□ 0.15
HPS4-204ENST00000422379 CC2D2AQ9P2K1 1620 aa15.92■□□□□ 0.14
HPS4-204ENST00000422379 SMARCA2P51531 1590 aa15.89■□□□□ 0.13
HPS4-204ENST00000422379 TOP2AP11388 1531 aaKnown RBP15.85■□□□□ 0.13
HPS4-204ENST00000422379 NCAPD3P42695 1498 aa15.85■□□□□ 0.13
HPS4-204ENST00000422379 DNAJC5BQ9UF47 199 aa15.84■□□□□ 0.13
HPS4-204ENST00000422379 BAZ1BQ9UIG0 1483 aaKnown RBP15.82■□□□□ 0.12
HPS4-204ENST00000422379 HMGXB3Q12766 1538 aa15.79■□□□□ 0.12
HPS4-204ENST00000422379 CCDC88BA6NC98 1476 aa15.72■□□□□ 0.11
HPS4-204ENST00000422379 CFTRP13569 1480 aa15.44■□□□□ 0.06
HPS4-204ENST00000422379 NESP48681 1621 aa15.43■□□□□ 0.06
HPS4-204ENST00000422379 CADPSQ9ULU8 1353 aa15.42■□□□□ 0.06
HPS4-204ENST00000422379 ABCC8Q09428 1581 aa15.33■□□□□ 0.04
HPS4-204ENST00000422379 LAMC3Q9Y6N6 1575 aa15.31■□□□□ 0.04
HPS4-204ENST00000422379 PRDM2Q13029 1718 aa15.27■□□□□ 0.03
HPS4-204ENST00000422379 FANCD2Q9BXW9 1451 aa15.25■□□□□ 0.03
HPS4-204ENST00000422379 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.029e-6■■■■■ 50.1
HPS4-204ENST00000422379 SYNJ1O43426 1573 aa15.21■□□□□ 0.02
HPS4-204ENST00000422379 PDS5BQ9NTI5 1447 aa15.19■□□□□ 0.02
HPS4-204ENST00000422379 KIF21AQ7Z4S6 1674 aa15.19■□□□□ 0.02
HPS4-204ENST00000422379 CUX1P39880 1505 aa15.18■□□□□ 0.02
HPS4-204ENST00000422379 TRIM41Q8WV44 630 aa15.17■□□□□ 0.02
HPS4-204ENST00000422379 CEP164Q9UPV0 1460 aa15.16■□□□□ 0.02
HPS4-204ENST00000422379 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
HPS4-204ENST00000422379 TOP2BQ02880 1626 aa15.11■□□□□ 0.01
HPS4-204ENST00000422379 BIVM-ERCC5R4GMW8 1640 aa15.1■□□□□ 0.01
HPS4-204ENST00000422379 TOPBP1Q92547 1522 aa15.07■□□□□ 0
HPS4-204ENST00000422379 ERCC6Q03468 1493 aa15.06■□□□□ 0
HPS4-204ENST00000422379 DNMBPQ6XZF7 1577 aa15.06■□□□□ 0
HPS4-204ENST00000422379 MRC2Q9UBG0 1479 aa15.04■□□□□ -0
HPS4-204ENST00000422379 THOC2Q8NI27 1593 aaKnown RBP15.02□□□□□ -0.01
HPS4-204ENST00000422379 FGD5Q6ZNL6 1462 aa15.02□□□□□ -0.01
HPS4-204ENST00000422379 SOGA1O94964 1423 aa15□□□□□ -0.01
HPS4-204ENST00000422379 POLA1P09884 1462 aaPredicted RBP14.99□□□□□ -0.01
HPS4-204ENST00000422379 WDR62O43379 1518 aa14.99□□□□□ -0.01
HPS4-204ENST00000422379 RUSC2Q8N2Y8 1516 aa14.99□□□□□ -0.01
HPS4-204ENST00000422379 RAD54L2Q9Y4B4 1467 aa14.96□□□□□ -0.01
HPS4-204ENST00000422379 FAM9AQ8IZU1 332 aaPredicted RBP14.94□□□□□ -0.02
HPS4-204ENST00000422379 CUX2O14529 1486 aa14.93□□□□□ -0.02
HPS4-204ENST00000422379 TARBP1Q13395 1621 aaKnown RBP14.88□□□□□ -0.03
HPS4-204ENST00000422379 ABCA10Q8WWZ4 1543 aa14.87□□□□□ -0.03
HPS4-204ENST00000422379 WDR97A6NE52 1622 aa14.85□□□□□ -0.03
HPS4-204ENST00000422379 TDRD9Q8NDG6 1382 aaKnown RBP14.83□□□□□ -0.04
HPS4-204ENST00000422379 ZNF608Q9ULD9 1512 aaPredicted RBP14.82□□□□□ -0.04
HPS4-204ENST00000422379 KIF27Q86VH2 1401 aa14.81□□□□□ -0.04
HPS4-204ENST00000422379 IFT140Q96RY7 1462 aa14.81□□□□□ -0.04
HPS4-204ENST00000422379 LOC105371045A0A1W2PR82 267 aa14.8□□□□□ -0.04
HPS4-204ENST00000422379 EEA1Q15075 1411 aa14.79□□□□□ -0.04
HPS4-204ENST00000422379 ABCA5Q8WWZ7 1642 aa14.78□□□□□ -0.04
HPS4-204ENST00000422379 CSRNP3Q8WYN3 585 aa14.78□□□□□ -0.04
HPS4-204ENST00000422379 PHF23Q9BUL5 403 aaPredicted RBP14.78□□□□□ -0.04
HPS4-204ENST00000422379 AQRO60306 1485 aaKnown RBP eCLIP14.78□□□□□ -0.043e-8■■■■□ 19.7
HPS4-204ENST00000422379 IGF1RP08069 1367 aa14.77□□□□□ -0.04
HPS4-204ENST00000422379 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
HPS4-204ENST00000422379 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
HPS4-204ENST00000422379 EIF4G3O43432 1585 aaKnown RBP14.72□□□□□ -0.05
HPS4-204ENST00000422379 PRXQ9BXM0 1461 aa14.71□□□□□ -0.05
HPS4-204ENST00000422379 RAPGEF2Q9Y4G8 1499 aa14.69□□□□□ -0.06
HPS4-204ENST00000422379 KIF21BO75037 1637 aa14.67□□□□□ -0.06
HPS4-204ENST00000422379 ERICH3Q5RHP9 1530 aa14.66□□□□□ -0.06
HPS4-204ENST00000422379 PBRM1Q86U86 1689 aa14.66□□□□□ -0.06
HPS4-204ENST00000422379 GRIN2BQ13224 1484 aa14.65□□□□□ -0.06
HPS4-204ENST00000422379 CARMIL1Q5VZK9 1371 aa14.65□□□□□ -0.06
HPS4-204ENST00000422379 GOLGA3Q08378 1498 aa14.62□□□□□ -0.07
HPS4-204ENST00000422379 SNAPC4Q5SXM2 1469 aa14.62□□□□□ -0.07
HPS4-204ENST00000422379 ADAMTS12P58397 1594 aa14.6□□□□□ -0.07
HPS4-204ENST00000422379 CUL7Q14999 1698 aa14.6□□□□□ -0.07
HPS4-204ENST00000422379 FHAD1B1AJZ9 1412 aa14.57□□□□□ -0.08
HPS4-204ENST00000422379 UBTFP17480 764 aaKnown RBP14.55□□□□□ -0.08
HPS4-204ENST00000422379 MAGI1Q96QZ7 1491 aaPredicted RBP14.54□□□□□ -0.08
HPS4-204ENST00000422379 TNIKQ9UKE5 1360 aa14.54□□□□□ -0.08
HPS4-204ENST00000422379 SYNJ2O15056 1496 aa14.51□□□□□ -0.09
HPS4-204ENST00000422379 GRIN2AQ12879 1464 aa14.5□□□□□ -0.09
HPS4-204ENST00000422379 CEP162Q5TB80 1403 aa14.47□□□□□ -0.09
HPS4-204ENST00000422379 FBLN2P98095 1184 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms