RNA–Protein interactions for RNA: ENST00000421712.1

BRAT1-202, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 3

Gene BRAT1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-202ENST00000421712 NISCHQ9Y2I1 1504 aa37.71■■■■□ 3.63
BRAT1-202ENST00000421712 CCDC180Q9P1Z9 1646 aa33.39■■■□□ 2.94
BRAT1-202ENST00000421712 ABCC9O60706 1549 aa32.69■■■□□ 2.82
BRAT1-202ENST00000421712 DCAF8L2P0C7V8 631 aa31.73■■■□□ 2.67
BRAT1-202ENST00000421712 RB1CC1Q8TDY2 1594 aa31.44■■■□□ 2.62
BRAT1-202ENST00000421712 NACADO15069 1562 aa31.42■■■□□ 2.62
BRAT1-202ENST00000421712 ZCCHC6Q5VYS8 1495 aaKnown RBP31.4■■■□□ 2.62
BRAT1-202ENST00000421712 MYO15BQ96JP2 1530 aa31.2■■■□□ 2.59
BRAT1-202ENST00000421712 DCAF1Q9Y4B6 1507 aa31.14■■■□□ 2.57
BRAT1-202ENST00000421712 UNC13AQ9UPW8 1703 aa30.68■■■□□ 2.5
BRAT1-202ENST00000421712 PABPN1Q86U42 306 aaKnown RBP eCLIP30.65■■■□□ 2.5
BRAT1-202ENST00000421712 SCRIBQ14160 1630 aa30.59■■■□□ 2.49
BRAT1-202ENST00000421712 BICRAQ9NZM4 1560 aa30.42■■■□□ 2.46
BRAT1-202ENST00000421712 SHROOM4Q9ULL8 1493 aa30.08■■■□□ 2.41
BRAT1-202ENST00000421712 DNAJC5BQ9UF47 199 aa29.87■■■□□ 2.37
BRAT1-202ENST00000421712 EIF4G1Q04637 1599 aaKnown RBP29.65■■■□□ 2.34
BRAT1-202ENST00000421712 CC2D2AQ9P2K1 1620 aa29.52■■■□□ 2.32
BRAT1-202ENST00000421712 CECR2Q9BXF3 1484 aa29.39■■■□□ 2.3
BRAT1-202ENST00000421712 BAZ1AQ9NRL2 1556 aaPredicted RBP29.22■■■□□ 2.27
BRAT1-202ENST00000421712 SMARCA4P51532 1647 aa29.22■■■□□ 2.27
BRAT1-202ENST00000421712 MROH2BQ7Z745 1585 aa29.08■■■□□ 2.25
BRAT1-202ENST00000421712 ATAD2BQ9ULI0 1458 aa29.05■■■□□ 2.24
BRAT1-202ENST00000421712 SMARCA2P51531 1590 aa29.01■■■□□ 2.24
BRAT1-202ENST00000421712 NCAPD3P42695 1498 aa28.99■■■□□ 2.23
BRAT1-202ENST00000421712 PEG3Q9GZU2 1588 aa28.87■■■□□ 2.21
BRAT1-202ENST00000421712 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
BRAT1-202ENST00000421712 HMGXB3Q12766 1538 aa28.83■■■□□ 2.21
BRAT1-202ENST00000421712 RSF1Q96T23 1441 aaPredicted RBP28.81■■■□□ 2.2
BRAT1-202ENST00000421712 WIZO95785 1651 aa28.79■■■□□ 2.2
BRAT1-202ENST00000421712 TOP2AP11388 1531 aaKnown RBP28.46■■■□□ 2.15
BRAT1-202ENST00000421712 SUPT5HO00267 1087 aaKnown RBP28.39■■■□□ 2.14
BRAT1-202ENST00000421712 NESP48681 1621 aa28.3■■■□□ 2.12
BRAT1-202ENST00000421712 CADPSQ9ULU8 1353 aa28.21■■■□□ 2.11
BRAT1-202ENST00000421712 LAMC3Q9Y6N6 1575 aa28.2■■■□□ 2.11
BRAT1-202ENST00000421712 ERCC6Q03468 1493 aa28.2■■■□□ 2.1
BRAT1-202ENST00000421712 CCDC88BA6NC98 1476 aa28.17■■■□□ 2.1
BRAT1-202ENST00000421712 PDS5BQ9NTI5 1447 aa28.09■■■□□ 2.09
BRAT1-202ENST00000421712 CFTRP13569 1480 aa28.02■■■□□ 2.08
BRAT1-202ENST00000421712 KIF21AQ7Z4S6 1674 aa27.93■■■□□ 2.06
BRAT1-202ENST00000421712 FANCD2Q9BXW9 1451 aa27.89■■■□□ 2.05
BRAT1-202ENST00000421712 CEP164Q9UPV0 1460 aa27.83■■■□□ 2.05
BRAT1-202ENST00000421712 PRDM2Q13029 1718 aa27.78■■■□□ 2.04
BRAT1-202ENST00000421712 THOC2Q8NI27 1593 aaKnown RBP27.75■■■□□ 2.03
BRAT1-202ENST00000421712 CUX2O14529 1486 aa27.75■■■□□ 2.03
BRAT1-202ENST00000421712 MRC2Q9UBG0 1479 aa27.74■■■□□ 2.03
BRAT1-202ENST00000421712 WDR62O43379 1518 aa27.6■■■□□ 2.01
BRAT1-202ENST00000421712 URB2Q14146 1524 aaKnown RBP27.56■■■□□ 2
BRAT1-202ENST00000421712 ABCC8Q09428 1581 aa27.45■■□□□ 1.99
BRAT1-202ENST00000421712 DNAJC5Q9H3Z4 198 aa27.44■■□□□ 1.98
BRAT1-202ENST00000421712 TOPBP1Q92547 1522 aa27.43■■□□□ 1.98
BRAT1-202ENST00000421712 DNMBPQ6XZF7 1577 aa27.39■■□□□ 1.97
BRAT1-202ENST00000421712 CUX1P39880 1505 aa27.27■■□□□ 1.96
BRAT1-202ENST00000421712 IFT140Q96RY7 1462 aa27.23■■□□□ 1.95
BRAT1-202ENST00000421712 POLA1P09884 1462 aaPredicted RBP27.19■■□□□ 1.94
BRAT1-202ENST00000421712 WRNQ14191 1432 aaPredicted RBP eCLIP27.19■■□□□ 1.94
BRAT1-202ENST00000421712 FGD5Q6ZNL6 1462 aa27.18■■□□□ 1.94
BRAT1-202ENST00000421712 SOGA1O94964 1423 aa27.16■■□□□ 1.94
BRAT1-202ENST00000421712 RAD54L2Q9Y4B4 1467 aa27.13■■□□□ 1.93
BRAT1-202ENST00000421712 ZNF608Q9ULD9 1512 aaPredicted RBP27.1■■□□□ 1.93
BRAT1-202ENST00000421712 TARBP1Q13395 1621 aaKnown RBP27.07■■□□□ 1.92
BRAT1-202ENST00000421712 SYNJ1O43426 1573 aa27.06■■□□□ 1.92
BRAT1-202ENST00000421712 TOP2BQ02880 1626 aa27.05■■□□□ 1.92
BRAT1-202ENST00000421712 BIVM-ERCC5R4GMW8 1640 aa27.03■■□□□ 1.92
BRAT1-202ENST00000421712 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.911e-6■■■■□ 23.1
BRAT1-202ENST00000421712 TDRD9Q8NDG6 1382 aaKnown RBP27■■□□□ 1.91
BRAT1-202ENST00000421712 EIF4G3O43432 1585 aaKnown RBP26.96■■□□□ 1.91
BRAT1-202ENST00000421712 ABCA10Q8WWZ4 1543 aa26.89■■□□□ 1.89
BRAT1-202ENST00000421712 WDR97A6NE52 1622 aa26.84■■□□□ 1.89
BRAT1-202ENST00000421712 GAPVD1Q14C86 1478 aa26.82■■□□□ 1.88
BRAT1-202ENST00000421712 FBLN2P98095 1184 aa26.79■■□□□ 1.88
BRAT1-202ENST00000421712 GRIN2BQ13224 1484 aa26.79■■□□□ 1.88
BRAT1-202ENST00000421712 TRIM41Q8WV44 630 aa26.78■■□□□ 1.88
BRAT1-202ENST00000421712 OSCARQ8IYS5 282 aa26.75■■□□□ 1.87
BRAT1-202ENST00000421712 SNAPC4Q5SXM2 1469 aa26.74■■□□□ 1.87
BRAT1-202ENST00000421712 ABCA5Q8WWZ7 1642 aa26.73■■□□□ 1.87
BRAT1-202ENST00000421712 PBRM1Q86U86 1689 aa26.7■■□□□ 1.87
BRAT1-202ENST00000421712 CHMP7Q8WUX9 453 aaPredicted RBP26.69■■□□□ 1.86
BRAT1-202ENST00000421712 MAGI1Q96QZ7 1491 aaPredicted RBP26.68■■□□□ 1.86
BRAT1-202ENST00000421712 KIF27Q86VH2 1401 aa26.64■■□□□ 1.85
BRAT1-202ENST00000421712 CHD1O14646 1710 aa26.61■■□□□ 1.85
BRAT1-202ENST00000421712 SYNJ2O15056 1496 aa26.58■■□□□ 1.85
BRAT1-202ENST00000421712 ERICH3Q5RHP9 1530 aa26.57■■□□□ 1.84
BRAT1-202ENST00000421712 FHAD1B1AJZ9 1412 aa26.51■■□□□ 1.83
BRAT1-202ENST00000421712 IGF1RP08069 1367 aa26.49■■□□□ 1.83
BRAT1-202ENST00000421712 CHIC1Q5VXU3 224 aa26.49■■□□□ 1.83
BRAT1-202ENST00000421712 ADAMTS12P58397 1594 aa26.49■■□□□ 1.83
BRAT1-202ENST00000421712 RUSC2Q8N2Y8 1516 aa26.43■■□□□ 1.82
BRAT1-202ENST00000421712 GRIN2AQ12879 1464 aa26.42■■□□□ 1.82
BRAT1-202ENST00000421712 CARMIL1Q5VZK9 1371 aa26.37■■□□□ 1.81
BRAT1-202ENST00000421712 CUL7Q14999 1698 aa26.35■■□□□ 1.81
BRAT1-202ENST00000421712 CLASP1Q7Z460 1538 aa26.29■■□□□ 1.8
BRAT1-202ENST00000421712 FAM9AQ8IZU1 332 aaPredicted RBP26.27■■□□□ 1.8
BRAT1-202ENST00000421712 NUP160Q12769 1436 aa26.27■■□□□ 1.8
BRAT1-202ENST00000421712 CEP170Q5SW79 1584 aa26.27■■□□□ 1.8
BRAT1-202ENST00000421712 CSRNP3Q8WYN3 585 aa26.23■■□□□ 1.79
BRAT1-202ENST00000421712 ARHGEF11O15085 1522 aa26.2■■□□□ 1.79
BRAT1-202ENST00000421712 RAPGEF2Q9Y4G8 1499 aa26.2■■□□□ 1.78
BRAT1-202ENST00000421712 RIMBP3CA6NJZ7 1639 aa26.19■■□□□ 1.78
BRAT1-202ENST00000421712 RIMBP3BA6NNM3 1639 aa26.19■■□□□ 1.78
BRAT1-202ENST00000421712 RIMBP3Q9UFD9 1639 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms