RNA–Protein interactions for RNA: ENST00000421340.5

ABCF3-202, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 2

Gene ABCF3, Length 690 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-202ENST00000421340 NISCHQ9Y2I1 1504 aa50.26■■■■■ 5.64
ABCF3-202ENST00000421340 CCDC180Q9P1Z9 1646 aa44.15■■■■■ 4.66
ABCF3-202ENST00000421340 ABCC9O60706 1549 aa42.19■■■■■ 4.34
ABCF3-202ENST00000421340 ZCCHC6Q5VYS8 1495 aaKnown RBP42.07■■■■■ 4.33
ABCF3-202ENST00000421340 DCAF1Q9Y4B6 1507 aa41.69■■■■■ 4.27
ABCF3-202ENST00000421340 DCAF8L2P0C7V8 631 aa41.54■■■■■ 4.24
ABCF3-202ENST00000421340 MYO15BQ96JP2 1530 aa41.51■■■■■ 4.24
ABCF3-202ENST00000421340 NACADO15069 1562 aa41.33■■■■■ 4.21
ABCF3-202ENST00000421340 RB1CC1Q8TDY2 1594 aa41.08■■■■■ 4.17
ABCF3-202ENST00000421340 SCRIBQ14160 1630 aa40.31■■■■■ 4.04
ABCF3-202ENST00000421340 SHROOM4Q9ULL8 1493 aa40.25■■■■■ 4.03
ABCF3-202ENST00000421340 UNC13AQ9UPW8 1703 aa39.99■■■■□ 3.99
ABCF3-202ENST00000421340 BICRAQ9NZM4 1560 aa39.78■■■■□ 3.96
ABCF3-202ENST00000421340 PABPN1Q86U42 306 aaKnown RBP eCLIP39.65■■■■□ 3.94
ABCF3-202ENST00000421340 CECR2Q9BXF3 1484 aa39■■■■□ 3.83
ABCF3-202ENST00000421340 BAZ1AQ9NRL2 1556 aaPredicted RBP38.87■■■■□ 3.81
ABCF3-202ENST00000421340 SMARCA4P51532 1647 aa38.71■■■■□ 3.79
ABCF3-202ENST00000421340 MROH2BQ7Z745 1585 aa38.71■■■■□ 3.79
ABCF3-202ENST00000421340 RSF1Q96T23 1441 aaPredicted RBP38.71■■■■□ 3.79
ABCF3-202ENST00000421340 EIF4G1Q04637 1599 aaKnown RBP38.65■■■■□ 3.78
ABCF3-202ENST00000421340 SUPT5HO00267 1087 aaKnown RBP38.48■■■■□ 3.75
ABCF3-202ENST00000421340 PEG3Q9GZU2 1588 aa38.39■■■■□ 3.74
ABCF3-202ENST00000421340 ATAD2BQ9ULI0 1458 aa38.3■■■■□ 3.72
ABCF3-202ENST00000421340 SMARCA2P51531 1590 aa38.3■■■■□ 3.72
ABCF3-202ENST00000421340 WIZO95785 1651 aa38.29■■■■□ 3.72
ABCF3-202ENST00000421340 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.71
ABCF3-202ENST00000421340 NCAPD3P42695 1498 aa38.18■■■■□ 3.7
ABCF3-202ENST00000421340 BAZ1BQ9UIG0 1483 aaKnown RBP38.02■■■■□ 3.68
ABCF3-202ENST00000421340 TOP2AP11388 1531 aaKnown RBP38.02■■■■□ 3.68
ABCF3-202ENST00000421340 HMGXB3Q12766 1538 aa38.02■■■■□ 3.68
ABCF3-202ENST00000421340 DNAJC5BQ9UF47 199 aa37.84■■■■□ 3.65
ABCF3-202ENST00000421340 CCDC88BA6NC98 1476 aa37.59■■■■□ 3.61
ABCF3-202ENST00000421340 CADPSQ9ULU8 1353 aa37.12■■■■□ 3.53
ABCF3-202ENST00000421340 CFTRP13569 1480 aa37.1■■■■□ 3.53
ABCF3-202ENST00000421340 LAMC3Q9Y6N6 1575 aa36.92■■■■□ 3.5
ABCF3-202ENST00000421340 NESP48681 1621 aa36.81■■■■□ 3.48
ABCF3-202ENST00000421340 PRDM2Q13029 1718 aa36.71■■■■□ 3.47
ABCF3-202ENST00000421340 PDS5BQ9NTI5 1447 aa36.7■■■■□ 3.47
ABCF3-202ENST00000421340 FANCD2Q9BXW9 1451 aa36.62■■■■□ 3.45
ABCF3-202ENST00000421340 CHIC1Q5VXU3 224 aa36.61■■■■□ 3.45
ABCF3-202ENST00000421340 CEP164Q9UPV0 1460 aa36.46■■■■□ 3.43
ABCF3-202ENST00000421340 WRNQ14191 1432 aaPredicted RBP eCLIP36.46■■■■□ 3.43
ABCF3-202ENST00000421340 ABCC8Q09428 1581 aa36.44■■■■□ 3.42
ABCF3-202ENST00000421340 TRIM41Q8WV44 630 aa36.36■■■■□ 3.41
ABCF3-202ENST00000421340 KIF21AQ7Z4S6 1674 aa36.32■■■■□ 3.4
ABCF3-202ENST00000421340 ERCC6Q03468 1493 aa36.3■■■■□ 3.4
ABCF3-202ENST00000421340 CUX1P39880 1505 aa36.24■■■■□ 3.39
ABCF3-202ENST00000421340 TOP2BQ02880 1626 aa36.23■■■■□ 3.39
ABCF3-202ENST00000421340 SYNJ1O43426 1573 aa36.22■■■■□ 3.39
ABCF3-202ENST00000421340 MRC2Q9UBG0 1479 aa36.21■■■■□ 3.39
ABCF3-202ENST00000421340 BIVM-ERCC5R4GMW8 1640 aa36.18■■■■□ 3.38
ABCF3-202ENST00000421340 DNMBPQ6XZF7 1577 aa36.18■■■■□ 3.38
ABCF3-202ENST00000421340 URB2Q14146 1524 aaKnown RBP36.17■■■■□ 3.38
ABCF3-202ENST00000421340 TOPBP1Q92547 1522 aa36.15■■■■□ 3.38
ABCF3-202ENST00000421340 WDR62O43379 1518 aa36.04■■■■□ 3.36
ABCF3-202ENST00000421340 THOC2Q8NI27 1593 aaKnown RBP36■■■■□ 3.35
ABCF3-202ENST00000421340 FGD5Q6ZNL6 1462 aa35.97■■■■□ 3.35
ABCF3-202ENST00000421340 POLA1P09884 1462 aaPredicted RBP35.92■■■■□ 3.34
ABCF3-202ENST00000421340 SOGA1O94964 1423 aa35.83■■■■□ 3.33
ABCF3-202ENST00000421340 CUX2O14529 1486 aa35.74■■■■□ 3.31
ABCF3-202ENST00000421340 RAD54L2Q9Y4B4 1467 aa35.73■■■■□ 3.31
ABCF3-202ENST00000421340 ABCA10Q8WWZ4 1543 aa35.72■■■■□ 3.31
ABCF3-202ENST00000421340 IFT140Q96RY7 1462 aa35.71■■■■□ 3.31
ABCF3-202ENST00000421340 EEA1Q15075 1411 aa35.7■■■■□ 3.31
ABCF3-202ENST00000421340 TARBP1Q13395 1621 aaKnown RBP35.65■■■■□ 3.3
ABCF3-202ENST00000421340 KIF27Q86VH2 1401 aa35.64■■■■□ 3.3
ABCF3-202ENST00000421340 RUSC2Q8N2Y8 1516 aa35.56■■■■□ 3.28
ABCF3-202ENST00000421340 WDR97A6NE52 1622 aa35.54■■■■□ 3.28
ABCF3-202ENST00000421340 CSRNP3Q8WYN3 585 aa35.5■■■■□ 3.27
ABCF3-202ENST00000421340 FAM9AQ8IZU1 332 aaPredicted RBP35.49■■■■□ 3.27
ABCF3-202ENST00000421340 TDRD9Q8NDG6 1382 aaKnown RBP35.48■■■■□ 3.27
ABCF3-202ENST00000421340 GAPVD1Q14C86 1478 aa35.41■■■■□ 3.26
ABCF3-202ENST00000421340 ABCA5Q8WWZ7 1642 aa35.4■■■■□ 3.26
ABCF3-202ENST00000421340 IGF1RP08069 1367 aa35.39■■■■□ 3.26
ABCF3-202ENST00000421340 ZNF608Q9ULD9 1512 aaPredicted RBP35.38■■■■□ 3.25
ABCF3-202ENST00000421340 AQRO60306 1485 aaKnown RBP eCLIP35.35■■■■□ 3.255e-8■■■■□ 26.4
ABCF3-202ENST00000421340 ERICH3Q5RHP9 1530 aa35.31■■■■□ 3.24
ABCF3-202ENST00000421340 GRIN2BQ13224 1484 aa35.28■■■■□ 3.24
ABCF3-202ENST00000421340 EIF4G3O43432 1585 aaKnown RBP35.24■■■■□ 3.23
ABCF3-202ENST00000421340 PRXQ9BXM0 1461 aa35.22■■■■□ 3.23
ABCF3-202ENST00000421340 CARMIL1Q5VZK9 1371 aa35.18■■■■□ 3.22
ABCF3-202ENST00000421340 KIF21BO75037 1637 aa35.14■■■■□ 3.22
ABCF3-202ENST00000421340 CUL7Q14999 1698 aa35.13■■■■□ 3.21
ABCF3-202ENST00000421340 PBRM1Q86U86 1689 aa35.12■■■■□ 3.21
ABCF3-202ENST00000421340 FHAD1B1AJZ9 1412 aa35.07■■■■□ 3.21
ABCF3-202ENST00000421340 MAGI1Q96QZ7 1491 aaPredicted RBP35.07■■■■□ 3.2
ABCF3-202ENST00000421340 RAPGEF2Q9Y4G8 1499 aa35.07■■■■□ 3.2
ABCF3-202ENST00000421340 LOC105371045A0A1W2PR82 267 aa35.06■■■■□ 3.2
ABCF3-202ENST00000421340 GOLGA3Q08378 1498 aa35.05■■■■□ 3.2
ABCF3-202ENST00000421340 SNAPC4Q5SXM2 1469 aa35.02■■■■□ 3.2
ABCF3-202ENST00000421340 ADAMTS12P58397 1594 aa34.98■■■■□ 3.19
ABCF3-202ENST00000421340 SYNJ2O15056 1496 aa34.91■■■■□ 3.18
ABCF3-202ENST00000421340 UBTFP17480 764 aaKnown RBP34.89■■■■□ 3.18
ABCF3-202ENST00000421340 TNIKQ9UKE5 1360 aa34.87■■■■□ 3.17
ABCF3-202ENST00000421340 EHMT2Q96KQ7 1210 aa34.87■■■■□ 3.17
ABCF3-202ENST00000421340 CHMP7Q8WUX9 453 aaPredicted RBP34.85■■■■□ 3.17
ABCF3-202ENST00000421340 GRIN2AQ12879 1464 aa34.79■■■■□ 3.16
ABCF3-202ENST00000421340 FBLN2P98095 1184 aa34.72■■■■□ 3.15
ABCF3-202ENST00000421340 NUP160Q12769 1436 aa34.64■■■■□ 3.14
ABCF3-202ENST00000421340 KIAA0586Q9BVV6 1533 aa34.58■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms