RNA–Protein interactions for RNA: ENST00000420166.5

HMGXB4-203, Transcript of HMG-box containing 4, humanhuman

TSL 2

Gene HMGXB4, Length 1,257 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-203ENST00000420166 NISCHQ9Y2I1 1504 aa49.77■■■■■ 5.56
HMGXB4-203ENST00000420166 CCDC180Q9P1Z9 1646 aa44.18■■■■■ 4.66
HMGXB4-203ENST00000420166 ABCC9O60706 1549 aa42.92■■■■■ 4.46
HMGXB4-203ENST00000420166 ZCCHC6Q5VYS8 1495 aaKnown RBP41.53■■■■■ 4.24
HMGXB4-203ENST00000420166 NACADO15069 1562 aa41.44■■■■■ 4.22
HMGXB4-203ENST00000420166 RB1CC1Q8TDY2 1594 aa41.43■■■■■ 4.22
HMGXB4-203ENST00000420166 DCAF8L2P0C7V8 631 aa41.39■■■■■ 4.22
HMGXB4-203ENST00000420166 MYO15BQ96JP2 1530 aa41.28■■■■■ 4.2
HMGXB4-203ENST00000420166 DCAF1Q9Y4B6 1507 aa41.21■■■■■ 4.19
HMGXB4-203ENST00000420166 UNC13AQ9UPW8 1703 aa40.55■■■■■ 4.08
HMGXB4-203ENST00000420166 SCRIBQ14160 1630 aa40.31■■■■■ 4.04
HMGXB4-203ENST00000420166 BICRAQ9NZM4 1560 aa40.18■■■■■ 4.02
HMGXB4-203ENST00000420166 PABPN1Q86U42 306 aaKnown RBP eCLIP40.12■■■■■ 4.01
HMGXB4-203ENST00000420166 SHROOM4Q9ULL8 1493 aa39.78■■■■□ 3.96
HMGXB4-203ENST00000420166 DNAJC5BQ9UF47 199 aa39.12■■■■□ 3.85
HMGXB4-203ENST00000420166 EIF4G1Q04637 1599 aaKnown RBP39.08■■■■□ 3.85
HMGXB4-203ENST00000420166 CC2D2AQ9P2K1 1620 aa38.85■■■■□ 3.81
HMGXB4-203ENST00000420166 CECR2Q9BXF3 1484 aa38.73■■■■□ 3.79
HMGXB4-203ENST00000420166 SMARCA4P51532 1647 aa38.59■■■■□ 3.77
HMGXB4-203ENST00000420166 BAZ1AQ9NRL2 1556 aaPredicted RBP38.57■■■■□ 3.76
HMGXB4-203ENST00000420166 MROH2BQ7Z745 1585 aa38.36■■■■□ 3.73
HMGXB4-203ENST00000420166 ATAD2BQ9ULI0 1458 aa38.28■■■■□ 3.72
HMGXB4-203ENST00000420166 SMARCA2P51531 1590 aa38.27■■■■□ 3.72
HMGXB4-203ENST00000420166 NCAPD3P42695 1498 aa38.22■■■■□ 3.71
HMGXB4-203ENST00000420166 PEG3Q9GZU2 1588 aa38.2■■■■□ 3.71
HMGXB4-203ENST00000420166 HMGXB3Q12766 1538 aa38.09■■■■□ 3.69
HMGXB4-203ENST00000420166 RSF1Q96T23 1441 aaPredicted RBP38.01■■■■□ 3.68
HMGXB4-203ENST00000420166 BAZ1BQ9UIG0 1483 aaKnown RBP37.99■■■■□ 3.67
HMGXB4-203ENST00000420166 WIZO95785 1651 aa37.98■■■■□ 3.67
HMGXB4-203ENST00000420166 TOP2AP11388 1531 aaKnown RBP37.59■■■■□ 3.61
HMGXB4-203ENST00000420166 NESP48681 1621 aa37.23■■■■□ 3.55
HMGXB4-203ENST00000420166 SUPT5HO00267 1087 aaKnown RBP37.2■■■■□ 3.55
HMGXB4-203ENST00000420166 LAMC3Q9Y6N6 1575 aa37.19■■■■□ 3.54
HMGXB4-203ENST00000420166 CCDC88BA6NC98 1476 aa37.12■■■■□ 3.53
HMGXB4-203ENST00000420166 CADPSQ9ULU8 1353 aa37.1■■■■□ 3.53
HMGXB4-203ENST00000420166 ERCC6Q03468 1493 aa36.97■■■■□ 3.51
HMGXB4-203ENST00000420166 CFTRP13569 1480 aa36.95■■■■□ 3.51
HMGXB4-203ENST00000420166 PDS5BQ9NTI5 1447 aa36.9■■■■□ 3.5
HMGXB4-203ENST00000420166 KIF21AQ7Z4S6 1674 aa36.83■■■■□ 3.49
HMGXB4-203ENST00000420166 PRDM2Q13029 1718 aa36.78■■■■□ 3.48
HMGXB4-203ENST00000420166 FANCD2Q9BXW9 1451 aa36.7■■■■□ 3.47
HMGXB4-203ENST00000420166 THOC2Q8NI27 1593 aaKnown RBP36.64■■■■□ 3.46
HMGXB4-203ENST00000420166 CEP164Q9UPV0 1460 aa36.63■■■■□ 3.45
HMGXB4-203ENST00000420166 MRC2Q9UBG0 1479 aa36.53■■■■□ 3.44
HMGXB4-203ENST00000420166 CUX2O14529 1486 aa36.5■■■■□ 3.43
HMGXB4-203ENST00000420166 WDR62O43379 1518 aa36.41■■■■□ 3.42
HMGXB4-203ENST00000420166 URB2Q14146 1524 aaKnown RBP36.33■■■■□ 3.41
HMGXB4-203ENST00000420166 ABCC8Q09428 1581 aa36.15■■■■□ 3.38
HMGXB4-203ENST00000420166 TOPBP1Q92547 1522 aa36.15■■■■□ 3.38
HMGXB4-203ENST00000420166 DNMBPQ6XZF7 1577 aa36.15■■■■□ 3.38
HMGXB4-203ENST00000420166 CUX1P39880 1505 aa35.98■■■■□ 3.35
HMGXB4-203ENST00000420166 POLA1P09884 1462 aaPredicted RBP35.86■■■■□ 3.33
HMGXB4-203ENST00000420166 IFT140Q96RY7 1462 aa35.86■■■■□ 3.33
HMGXB4-203ENST00000420166 WRNQ14191 1432 aaPredicted RBP eCLIP35.83■■■■□ 3.33
HMGXB4-203ENST00000420166 FGD5Q6ZNL6 1462 aa35.81■■■■□ 3.32
HMGXB4-203ENST00000420166 BIVM-ERCC5R4GMW8 1640 aa35.76■■■■□ 3.32
HMGXB4-203ENST00000420166 SYNJ1O43426 1573 aa35.76■■■■□ 3.31
HMGXB4-203ENST00000420166 TOP2BQ02880 1626 aa35.75■■■■□ 3.31
HMGXB4-203ENST00000420166 TARBP1Q13395 1621 aaKnown RBP35.75■■■■□ 3.31
HMGXB4-203ENST00000420166 SOGA1O94964 1423 aa35.69■■■■□ 3.3
HMGXB4-203ENST00000420166 RAD54L2Q9Y4B4 1467 aa35.68■■■■□ 3.3
HMGXB4-203ENST00000420166 ZNF608Q9ULD9 1512 aaPredicted RBP35.67■■■■□ 3.3
HMGXB4-203ENST00000420166 EIF4G3O43432 1585 aaKnown RBP35.56■■■■□ 3.28
HMGXB4-203ENST00000420166 WDR97A6NE52 1622 aa35.55■■■■□ 3.28
HMGXB4-203ENST00000420166 ABCA10Q8WWZ4 1543 aa35.48■■■■□ 3.27
HMGXB4-203ENST00000420166 AQRO60306 1485 aaKnown RBP eCLIP35.48■■■■□ 3.272e-9■■■■■ 47.9
HMGXB4-203ENST00000420166 TDRD9Q8NDG6 1382 aaKnown RBP35.46■■■■□ 3.27
HMGXB4-203ENST00000420166 ABCA5Q8WWZ7 1642 aa35.34■■■■□ 3.25
HMGXB4-203ENST00000420166 GAPVD1Q14C86 1478 aa35.3■■■■□ 3.24
HMGXB4-203ENST00000420166 GRIN2BQ13224 1484 aa35.26■■■■□ 3.23
HMGXB4-203ENST00000420166 PBRM1Q86U86 1689 aa35.26■■■■□ 3.23
HMGXB4-203ENST00000420166 SNAPC4Q5SXM2 1469 aa35.19■■■■□ 3.22
HMGXB4-203ENST00000420166 MAGI1Q96QZ7 1491 aaPredicted RBP35.16■■■■□ 3.22
HMGXB4-203ENST00000420166 TRIM41Q8WV44 630 aa35.11■■■■□ 3.21
HMGXB4-203ENST00000420166 CHD1O14646 1710 aa35.09■■■■□ 3.21
HMGXB4-203ENST00000420166 ERICH3Q5RHP9 1530 aa35.06■■■■□ 3.2
HMGXB4-203ENST00000420166 KIF27Q86VH2 1401 aa35.06■■■■□ 3.2
HMGXB4-203ENST00000420166 DNAJC5Q9H3Z4 198 aa35.03■■■■□ 3.2
HMGXB4-203ENST00000420166 SYNJ2O15056 1496 aa35■■■■□ 3.19
HMGXB4-203ENST00000420166 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
HMGXB4-203ENST00000420166 ADAMTS12P58397 1594 aa34.99■■■■□ 3.19
HMGXB4-203ENST00000420166 FBLN2P98095 1184 aa34.97■■■■□ 3.19
HMGXB4-203ENST00000420166 CHMP7Q8WUX9 453 aaPredicted RBP34.92■■■■□ 3.18
HMGXB4-203ENST00000420166 FHAD1B1AJZ9 1412 aa34.9■■■■□ 3.18
HMGXB4-203ENST00000420166 CHIC1Q5VXU3 224 aa34.88■■■■□ 3.17
HMGXB4-203ENST00000420166 IGF1RP08069 1367 aa34.87■■■■□ 3.17
HMGXB4-203ENST00000420166 GRIN2AQ12879 1464 aa34.82■■■■□ 3.16
HMGXB4-203ENST00000420166 CUL7Q14999 1698 aa34.82■■■■□ 3.16
HMGXB4-203ENST00000420166 RUSC2Q8N2Y8 1516 aa34.81■■■■□ 3.16
HMGXB4-203ENST00000420166 CLASP1Q7Z460 1538 aa34.69■■■■□ 3.14
HMGXB4-203ENST00000420166 CARMIL1Q5VZK9 1371 aa34.67■■■■□ 3.14
HMGXB4-203ENST00000420166 NUP160Q12769 1436 aa34.65■■■■□ 3.14
HMGXB4-203ENST00000420166 CEP170Q5SW79 1584 aa34.65■■■■□ 3.14
HMGXB4-203ENST00000420166 EEA1Q15075 1411 aa34.57■■■■□ 3.13
HMGXB4-203ENST00000420166 RAPGEF2Q9Y4G8 1499 aa34.52■■■■□ 3.12
HMGXB4-203ENST00000420166 ARHGEF11O15085 1522 aa34.47■■■■□ 3.11
HMGXB4-203ENST00000420166 RIMBP3CA6NJZ7 1639 aa34.46■■■■□ 3.11
HMGXB4-203ENST00000420166 RIMBP3BA6NNM3 1639 aa34.46■■■■□ 3.11
HMGXB4-203ENST00000420166 RIMBP3Q9UFD9 1639 aa34.46■■■■□ 3.11
HMGXB4-203ENST00000420166 PRXQ9BXM0 1461 aa34.46■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms