RNA–Protein interactions for RNA: ENST00000418518.2

LINCMD1-201, Transcript of long intergenic non-protein coding RNA, muscle differentiation 1, humanhuman

TSL 5 BASIC

Gene LINCMD1, Length 462 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINCMD1-201ENST00000418518 NISCHQ9Y2I1 1504 aa20.34■□□□□ 0.85
LINCMD1-201ENST00000418518 CCDC180Q9P1Z9 1646 aa17.78■□□□□ 0.44
LINCMD1-201ENST00000418518 ZCCHC6Q5VYS8 1495 aaKnown RBP17.17■□□□□ 0.34
LINCMD1-201ENST00000418518 DCAF1Q9Y4B6 1507 aa16.92■□□□□ 0.3
LINCMD1-201ENST00000418518 MYO15BQ96JP2 1530 aa16.65■□□□□ 0.26
LINCMD1-201ENST00000418518 SHROOM4Q9ULL8 1493 aa16.5■□□□□ 0.23
LINCMD1-201ENST00000418518 NACADO15069 1562 aa16.43■□□□□ 0.22
LINCMD1-201ENST00000418518 DCAF8L2P0C7V8 631 aa16.38■□□□□ 0.21
LINCMD1-201ENST00000418518 ABCC9O60706 1549 aa16.38■□□□□ 0.21
LINCMD1-201ENST00000418518 RB1CC1Q8TDY2 1594 aa16.21■□□□□ 0.19
LINCMD1-201ENST00000418518 SCRIBQ14160 1630 aa16.21■□□□□ 0.19
LINCMD1-201ENST00000418518 UNC13AQ9UPW8 1703 aa16.01■□□□□ 0.15
LINCMD1-201ENST00000418518 SUPT5HO00267 1087 aaKnown RBP15.93■□□□□ 0.14
LINCMD1-201ENST00000418518 RSF1Q96T23 1441 aaPredicted RBP15.81■□□□□ 0.12
LINCMD1-201ENST00000418518 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
LINCMD1-201ENST00000418518 CECR2Q9BXF3 1484 aa15.72■□□□□ 0.11
LINCMD1-201ENST00000418518 BAZ1AQ9NRL2 1556 aaPredicted RBP15.7■□□□□ 0.1
LINCMD1-201ENST00000418518 MROH2BQ7Z745 1585 aa15.69■□□□□ 0.1
LINCMD1-201ENST00000418518 SMARCA4P51532 1647 aa15.64■□□□□ 0.09
LINCMD1-201ENST00000418518 WIZO95785 1651 aa15.6■□□□□ 0.09
LINCMD1-201ENST00000418518 PEG3Q9GZU2 1588 aa15.49■□□□□ 0.07
LINCMD1-201ENST00000418518 TOP2AP11388 1531 aaKnown RBP15.48■□□□□ 0.07
LINCMD1-201ENST00000418518 CHIC1Q5VXU3 224 aa15.48■□□□□ 0.07
LINCMD1-201ENST00000418518 EIF4G1Q04637 1599 aaKnown RBP15.39■□□□□ 0.05
LINCMD1-201ENST00000418518 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
LINCMD1-201ENST00000418518 SMARCA2P51531 1590 aa15.33■□□□□ 0.05
LINCMD1-201ENST00000418518 ATAD2BQ9ULI0 1458 aa15.27■□□□□ 0.03
LINCMD1-201ENST00000418518 CCDC88BA6NC98 1476 aa15.24■□□□□ 0.03
LINCMD1-201ENST00000418518 HMGXB3Q12766 1538 aa15.19■□□□□ 0.02
LINCMD1-201ENST00000418518 BAZ1BQ9UIG0 1483 aaKnown RBP15.17■□□□□ 0.02
LINCMD1-201ENST00000418518 NCAPD3P42695 1498 aa15.12■□□□□ 0.01
LINCMD1-201ENST00000418518 TRIM41Q8WV44 630 aa15.01□□□□□ -0.01
LINCMD1-201ENST00000418518 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
LINCMD1-201ENST00000418518 PRDM2Q13029 1718 aa14.96□□□□□ -0.01
LINCMD1-201ENST00000418518 CC2D2AQ9P2K1 1620 aa14.93□□□□□ -0.02
LINCMD1-201ENST00000418518 WRNQ14191 1432 aaPredicted RBP eCLIP14.86□□□□□ -0.03
LINCMD1-201ENST00000418518 SYNJ1O43426 1573 aa14.85□□□□□ -0.03
LINCMD1-201ENST00000418518 BIVM-ERCC5R4GMW8 1640 aa14.84□□□□□ -0.03
LINCMD1-201ENST00000418518 CFTRP13569 1480 aa14.83□□□□□ -0.03
LINCMD1-201ENST00000418518 TOP2BQ02880 1626 aa14.81□□□□□ -0.04
LINCMD1-201ENST00000418518 EEA1Q15075 1411 aa14.81□□□□□ -0.04
LINCMD1-201ENST00000418518 LOC105371045A0A1W2PR82 267 aa14.79□□□□□ -0.04
LINCMD1-201ENST00000418518 SOGA1O94964 1423 aa14.69□□□□□ -0.06
LINCMD1-201ENST00000418518 CUX1P39880 1505 aa14.68□□□□□ -0.06
LINCMD1-201ENST00000418518 CADPSQ9ULU8 1353 aa14.68□□□□□ -0.06
LINCMD1-201ENST00000418518 FAM9AQ8IZU1 332 aaPredicted RBP14.67□□□□□ -0.06
LINCMD1-201ENST00000418518 KIF21BO75037 1637 aa14.66□□□□□ -0.06
LINCMD1-201ENST00000418518 RUSC2Q8N2Y8 1516 aa14.64□□□□□ -0.07
LINCMD1-201ENST00000418518 LAMC3Q9Y6N6 1575 aa14.61□□□□□ -0.07
LINCMD1-201ENST00000418518 GOLGA3Q08378 1498 aa14.58□□□□□ -0.08
LINCMD1-201ENST00000418518 CSRNP3Q8WYN3 585 aa14.57□□□□□ -0.08
LINCMD1-201ENST00000418518 CEP164Q9UPV0 1460 aa14.57□□□□□ -0.08
LINCMD1-201ENST00000418518 TNIKQ9UKE5 1360 aa14.56□□□□□ -0.08
LINCMD1-201ENST00000418518 FANCD2Q9BXW9 1451 aa14.54□□□□□ -0.08
LINCMD1-201ENST00000418518 DNMBPQ6XZF7 1577 aa14.52□□□□□ -0.08
LINCMD1-201ENST00000418518 ERICH3Q5RHP9 1530 aa14.52□□□□□ -0.08
LINCMD1-201ENST00000418518 CEP162Q5TB80 1403 aa14.48□□□□□ -0.09
LINCMD1-201ENST00000418518 NESP48681 1621 aa14.48□□□□□ -0.09
LINCMD1-201ENST00000418518 PRXQ9BXM0 1461 aa14.47□□□□□ -0.09
LINCMD1-201ENST00000418518 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
LINCMD1-201ENST00000418518 FGD5Q6ZNL6 1462 aa14.45□□□□□ -0.1
LINCMD1-201ENST00000418518 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
LINCMD1-201ENST00000418518 WDR97A6NE52 1622 aa14.43□□□□□ -0.1
LINCMD1-201ENST00000418518 RAPGEF2Q9Y4G8 1499 aa14.43□□□□□ -0.1
LINCMD1-201ENST00000418518 KIF21AQ7Z4S6 1674 aa14.42□□□□□ -0.1
LINCMD1-201ENST00000418518 PDS5BQ9NTI5 1447 aa14.39□□□□□ -0.11
LINCMD1-201ENST00000418518 ABCA10Q8WWZ4 1543 aa14.38□□□□□ -0.11
LINCMD1-201ENST00000418518 URB2Q14146 1524 aaKnown RBP14.37□□□□□ -0.11
LINCMD1-201ENST00000418518 POLA1P09884 1462 aaPredicted RBP14.37□□□□□ -0.11
LINCMD1-201ENST00000418518 EHMT2Q96KQ7 1210 aa14.36□□□□□ -0.11
LINCMD1-201ENST00000418518 CUX2O14529 1486 aa14.36□□□□□ -0.11
LINCMD1-201ENST00000418518 TRIM26Q12899 539 aaPredicted RBP14.35□□□□□ -0.11
LINCMD1-201ENST00000418518 UBTFP17480 764 aaKnown RBP14.32□□□□□ -0.12
LINCMD1-201ENST00000418518 DNAJC5BQ9UF47 199 aa14.32□□□□□ -0.12
LINCMD1-201ENST00000418518 CUL7Q14999 1698 aa14.31□□□□□ -0.12
LINCMD1-201ENST00000418518 PCGF6Q9BYE7 350 aa14.31□□□□□ -0.12
LINCMD1-201ENST00000418518 CLIP1P30622 1438 aa14.31□□□□□ -0.12
LINCMD1-201ENST00000418518 ABCA5Q8WWZ7 1642 aa14.3□□□□□ -0.12
LINCMD1-201ENST00000418518 IGF1RP08069 1367 aa14.29□□□□□ -0.12
LINCMD1-201ENST00000418518 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
LINCMD1-201ENST00000418518 RAD54L2Q9Y4B4 1467 aa14.26□□□□□ -0.13
LINCMD1-201ENST00000418518 VPS8Q8N3P4 1428 aa14.25□□□□□ -0.13
LINCMD1-201ENST00000418518 MRC2Q9UBG0 1479 aa14.25□□□□□ -0.13
LINCMD1-201ENST00000418518 CARMIL1Q5VZK9 1371 aa14.22□□□□□ -0.13
LINCMD1-201ENST00000418518 WDR62O43379 1518 aa14.21□□□□□ -0.13
LINCMD1-201ENST00000418518 ARAP1Q96P48 1450 aa14.21□□□□□ -0.13
LINCMD1-201ENST00000418518 CTTNBP2Q8WZ74 1663 aa14.2□□□□□ -0.14
LINCMD1-201ENST00000418518 PBRM1Q86U86 1689 aa14.18□□□□□ -0.14
LINCMD1-201ENST00000418518 HRCP23327 699 aa14.17□□□□□ -0.14
LINCMD1-201ENST00000418518 THOC2Q8NI27 1593 aaKnown RBP14.15□□□□□ -0.14
LINCMD1-201ENST00000418518 ARHGAP35Q9NRY4 1499 aa14.15□□□□□ -0.14
LINCMD1-201ENST00000418518 GAPVD1Q14C86 1478 aa14.14□□□□□ -0.15
LINCMD1-201ENST00000418518 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
LINCMD1-201ENST00000418518 IFT140Q96RY7 1462 aa14.09□□□□□ -0.15
LINCMD1-201ENST00000418518 ADAMTS12P58397 1594 aa14.09□□□□□ -0.15
LINCMD1-201ENST00000418518 MAP3K1Q13233 1512 aa14.05□□□□□ -0.16
LINCMD1-201ENST00000418518 TDRD9Q8NDG6 1382 aaKnown RBP14.05□□□□□ -0.16
LINCMD1-201ENST00000418518 SAMD9Q5K651 1589 aa14.04□□□□□ -0.16
LINCMD1-201ENST00000418518 CFAP43Q8NDM7 1665 aa14.02□□□□□ -0.16
LINCMD1-201ENST00000418518 GRIN2BQ13224 1484 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms