RNA–Protein interactions for RNA: ENST00000418454.2

HMGA1P6-201, Transcript of high mobility group AT-hook 1 pseudogene 6, humanhuman

BASIC

Gene HMGA1P6, Length 391 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P6-201ENST00000418454 NISCHQ9Y2I1 1504 aa23.16■■□□□ 1.3
HMGA1P6-201ENST00000418454 CCDC180Q9P1Z9 1646 aa20.3■□□□□ 0.84
HMGA1P6-201ENST00000418454 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
HMGA1P6-201ENST00000418454 DCAF1Q9Y4B6 1507 aa19.33■□□□□ 0.68
HMGA1P6-201ENST00000418454 MYO15BQ96JP2 1530 aa19.21■□□□□ 0.67
HMGA1P6-201ENST00000418454 ABCC9O60706 1549 aa19.07■□□□□ 0.64
HMGA1P6-201ENST00000418454 NACADO15069 1562 aa18.98■□□□□ 0.63
HMGA1P6-201ENST00000418454 DCAF8L2P0C7V8 631 aa18.95■□□□□ 0.62
HMGA1P6-201ENST00000418454 RB1CC1Q8TDY2 1594 aa18.79■□□□□ 0.6
HMGA1P6-201ENST00000418454 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.55
HMGA1P6-201ENST00000418454 SCRIBQ14160 1630 aa18.4■□□□□ 0.54
HMGA1P6-201ENST00000418454 UNC13AQ9UPW8 1703 aa18.18■□□□□ 0.5
HMGA1P6-201ENST00000418454 BICRAQ9NZM4 1560 aa18.12■□□□□ 0.49
HMGA1P6-201ENST00000418454 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
HMGA1P6-201ENST00000418454 BAZ1AQ9NRL2 1556 aaPredicted RBP17.92■□□□□ 0.46
HMGA1P6-201ENST00000418454 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.46
HMGA1P6-201ENST00000418454 CECR2Q9BXF3 1484 aa17.86■□□□□ 0.45
HMGA1P6-201ENST00000418454 SUPT5HO00267 1087 aaKnown RBP17.81■□□□□ 0.44
HMGA1P6-201ENST00000418454 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
HMGA1P6-201ENST00000418454 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
HMGA1P6-201ENST00000418454 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
HMGA1P6-201ENST00000418454 SMARCA2P51531 1590 aa17.61■□□□□ 0.41
HMGA1P6-201ENST00000418454 EIF4G1Q04637 1599 aaKnown RBP17.61■□□□□ 0.41
HMGA1P6-201ENST00000418454 WIZO95785 1651 aa17.56■□□□□ 0.4
HMGA1P6-201ENST00000418454 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
HMGA1P6-201ENST00000418454 NCAPD3P42695 1498 aa17.54■□□□□ 0.4
HMGA1P6-201ENST00000418454 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.4
HMGA1P6-201ENST00000418454 HMGXB3Q12766 1538 aa17.45■□□□□ 0.38
HMGA1P6-201ENST00000418454 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
HMGA1P6-201ENST00000418454 CC2D2AQ9P2K1 1620 aa17.32■□□□□ 0.36
HMGA1P6-201ENST00000418454 CCDC88BA6NC98 1476 aa17.31■□□□□ 0.36
HMGA1P6-201ENST00000418454 CHIC1Q5VXU3 224 aa17.12■□□□□ 0.33
HMGA1P6-201ENST00000418454 CFTRP13569 1480 aa17.06■□□□□ 0.32
HMGA1P6-201ENST00000418454 CADPSQ9ULU8 1353 aa17.03■□□□□ 0.32
HMGA1P6-201ENST00000418454 DNAJC5BQ9UF47 199 aa16.93■□□□□ 0.3
HMGA1P6-201ENST00000418454 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
HMGA1P6-201ENST00000418454 LAMC3Q9Y6N6 1575 aa16.91■□□□□ 0.3
HMGA1P6-201ENST00000418454 PRDM2Q13029 1718 aa16.85■□□□□ 0.29
HMGA1P6-201ENST00000418454 WRNQ14191 1432 aaPredicted RBP eCLIP16.85■□□□□ 0.29
HMGA1P6-201ENST00000418454 PDS5BQ9NTI5 1447 aa16.82■□□□□ 0.28
HMGA1P6-201ENST00000418454 ABCC8Q09428 1581 aa16.77■□□□□ 0.27
HMGA1P6-201ENST00000418454 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
HMGA1P6-201ENST00000418454 TOP2BQ02880 1626 aa16.73■□□□□ 0.27
HMGA1P6-201ENST00000418454 EEA1Q15075 1411 aa16.7■□□□□ 0.26
HMGA1P6-201ENST00000418454 BIVM-ERCC5R4GMW8 1640 aa16.7■□□□□ 0.26
HMGA1P6-201ENST00000418454 NESP48681 1621 aa16.68■□□□□ 0.26
HMGA1P6-201ENST00000418454 CEP164Q9UPV0 1460 aa16.67■□□□□ 0.26
HMGA1P6-201ENST00000418454 SYNJ1O43426 1573 aa16.66■□□□□ 0.26
HMGA1P6-201ENST00000418454 CUX1P39880 1505 aa16.64■□□□□ 0.25
HMGA1P6-201ENST00000418454 DNMBPQ6XZF7 1577 aa16.6■□□□□ 0.25
HMGA1P6-201ENST00000418454 TOPBP1Q92547 1522 aa16.55■□□□□ 0.24
HMGA1P6-201ENST00000418454 CSRNP3Q8WYN3 585 aa16.52■□□□□ 0.24
HMGA1P6-201ENST00000418454 MRC2Q9UBG0 1479 aa16.52■□□□□ 0.23
HMGA1P6-201ENST00000418454 URB2Q14146 1524 aaKnown RBP16.5■□□□□ 0.23
HMGA1P6-201ENST00000418454 KIF27Q86VH2 1401 aa16.49■□□□□ 0.23
HMGA1P6-201ENST00000418454 FGD5Q6ZNL6 1462 aa16.48■□□□□ 0.23
HMGA1P6-201ENST00000418454 SOGA1O94964 1423 aa16.48■□□□□ 0.23
HMGA1P6-201ENST00000418454 KIF21AQ7Z4S6 1674 aa16.48■□□□□ 0.23
HMGA1P6-201ENST00000418454 POLA1P09884 1462 aaPredicted RBP16.45■□□□□ 0.22
HMGA1P6-201ENST00000418454 WDR62O43379 1518 aa16.45■□□□□ 0.22
HMGA1P6-201ENST00000418454 ABCA10Q8WWZ4 1543 aa16.45■□□□□ 0.22
HMGA1P6-201ENST00000418454 ERCC6Q03468 1493 aa16.44■□□□□ 0.22
HMGA1P6-201ENST00000418454 FAM9AQ8IZU1 332 aaPredicted RBP16.38■□□□□ 0.21
HMGA1P6-201ENST00000418454 WDR97A6NE52 1622 aa16.37■□□□□ 0.21
HMGA1P6-201ENST00000418454 RUSC2Q8N2Y8 1516 aa16.37■□□□□ 0.21
HMGA1P6-201ENST00000418454 IFT140Q96RY7 1462 aa16.36■□□□□ 0.21
HMGA1P6-201ENST00000418454 CUX2O14529 1486 aa16.35■□□□□ 0.21
HMGA1P6-201ENST00000418454 KIF21BO75037 1637 aa16.34■□□□□ 0.21
HMGA1P6-201ENST00000418454 IGF1RP08069 1367 aa16.34■□□□□ 0.21
HMGA1P6-201ENST00000418454 PRXQ9BXM0 1461 aa16.34■□□□□ 0.21
HMGA1P6-201ENST00000418454 THOC2Q8NI27 1593 aaKnown RBP16.33■□□□□ 0.2
HMGA1P6-201ENST00000418454 LOC105371045A0A1W2PR82 267 aa16.32■□□□□ 0.2
HMGA1P6-201ENST00000418454 ERICH3Q5RHP9 1530 aa16.32■□□□□ 0.2
HMGA1P6-201ENST00000418454 GOLGA3Q08378 1498 aa16.31■□□□□ 0.2
HMGA1P6-201ENST00000418454 RAD54L2Q9Y4B4 1467 aa16.31■□□□□ 0.2
HMGA1P6-201ENST00000418454 TARBP1Q13395 1621 aaKnown RBP16.3■□□□□ 0.2
HMGA1P6-201ENST00000418454 TNIKQ9UKE5 1360 aa16.3■□□□□ 0.2
HMGA1P6-201ENST00000418454 GAPVD1Q14C86 1478 aa16.25■□□□□ 0.19
HMGA1P6-201ENST00000418454 CARMIL1Q5VZK9 1371 aa16.25■□□□□ 0.19
HMGA1P6-201ENST00000418454 ABCA5Q8WWZ7 1642 aa16.24■□□□□ 0.19
HMGA1P6-201ENST00000418454 RAPGEF2Q9Y4G8 1499 aa16.22■□□□□ 0.19
HMGA1P6-201ENST00000418454 CUL7Q14999 1698 aa16.21■□□□□ 0.19
HMGA1P6-201ENST00000418454 TDRD9Q8NDG6 1382 aaKnown RBP16.2■□□□□ 0.18
HMGA1P6-201ENST00000418454 GRIN2BQ13224 1484 aa16.19■□□□□ 0.18
HMGA1P6-201ENST00000418454 UBTFP17480 764 aaKnown RBP16.18■□□□□ 0.18
HMGA1P6-201ENST00000418454 FHAD1B1AJZ9 1412 aa16.13■□□□□ 0.17
HMGA1P6-201ENST00000418454 AQRO60306 1485 aaKnown RBP eCLIP16.11■□□□□ 0.17
HMGA1P6-201ENST00000418454 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
HMGA1P6-201ENST00000418454 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
HMGA1P6-201ENST00000418454 CEP162Q5TB80 1403 aa16.07■□□□□ 0.16
HMGA1P6-201ENST00000418454 PBRM1Q86U86 1689 aa16.05■□□□□ 0.16
HMGA1P6-201ENST00000418454 EIF4G3O43432 1585 aaKnown RBP16.04■□□□□ 0.16
HMGA1P6-201ENST00000418454 ADAMTS12P58397 1594 aa16.02■□□□□ 0.16
HMGA1P6-201ENST00000418454 CLIP1P30622 1438 aa16.02■□□□□ 0.15
HMGA1P6-201ENST00000418454 SYNJ2O15056 1496 aa16■□□□□ 0.15
HMGA1P6-201ENST00000418454 SNAPC4Q5SXM2 1469 aa15.97■□□□□ 0.15
HMGA1P6-201ENST00000418454 EHMT2Q96KQ7 1210 aa15.97■□□□□ 0.15
HMGA1P6-201ENST00000418454 CHMP7Q8WUX9 453 aaPredicted RBP15.94■□□□□ 0.14
HMGA1P6-201ENST00000418454 GRIN2AQ12879 1464 aa15.94■□□□□ 0.14
HMGA1P6-201ENST00000418454 EFCAB5A4FU69 1503 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms