RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 NISCHQ9Y2I1 1504 aa19.85■□□□□ 0.77
TRIM48-201ENST00000417545 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
TRIM48-201ENST00000417545 CHIC1Q5VXU3 224 aa17.88■□□□□ 0.45
TRIM48-201ENST00000417545 CCDC180Q9P1Z9 1646 aa17.6■□□□□ 0.41
TRIM48-201ENST00000417545 ABCC9O60706 1549 aa16.94■□□□□ 0.3
TRIM48-201ENST00000417545 ZCCHC6Q5VYS8 1495 aaKnown RBP16.59■□□□□ 0.25
TRIM48-201ENST00000417545 DCAF8L2P0C7V8 631 aa16.59■□□□□ 0.25
TRIM48-201ENST00000417545 NACADO15069 1562 aa16.44■□□□□ 0.22
TRIM48-201ENST00000417545 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
TRIM48-201ENST00000417545 DCAF1Q9Y4B6 1507 aa16.4■□□□□ 0.22
TRIM48-201ENST00000417545 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
TRIM48-201ENST00000417545 MYO15BQ96JP2 1530 aa16.37■□□□□ 0.21
TRIM48-201ENST00000417545 PHF23Q9BUL5 403 aaPredicted RBP16.16■□□□□ 0.18
TRIM48-201ENST00000417545 SCRIBQ14160 1630 aa16.1■□□□□ 0.17
TRIM48-201ENST00000417545 UNC13AQ9UPW8 1703 aa16.06■□□□□ 0.16
TRIM48-201ENST00000417545 SHROOM4Q9ULL8 1493 aa15.93■□□□□ 0.14
TRIM48-201ENST00000417545 PABPN1Q86U42 306 aaKnown RBP eCLIP15.84■□□□□ 0.13
TRIM48-201ENST00000417545 BICRAQ9NZM4 1560 aa15.83■□□□□ 0.12
TRIM48-201ENST00000417545 EIF4G1Q04637 1599 aaKnown RBP15.44■□□□□ 0.06
TRIM48-201ENST00000417545 BAZ1AQ9NRL2 1556 aaPredicted RBP15.41■□□□□ 0.06
TRIM48-201ENST00000417545 CECR2Q9BXF3 1484 aa15.4■□□□□ 0.06
TRIM48-201ENST00000417545 FOXD1Q16676 465 aa15.4■□□□□ 0.06
TRIM48-201ENST00000417545 SMARCA4P51532 1647 aa15.38■□□□□ 0.05
TRIM48-201ENST00000417545 CC2D2AQ9P2K1 1620 aa15.33■□□□□ 0.04
TRIM48-201ENST00000417545 MROH2BQ7Z745 1585 aa15.3■□□□□ 0.04
TRIM48-201ENST00000417545 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
TRIM48-201ENST00000417545 WIZO95785 1651 aa15.19■□□□□ 0.02
TRIM48-201ENST00000417545 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
TRIM48-201ENST00000417545 ATAD2BQ9ULI0 1458 aa15.17■□□□□ 0.02
TRIM48-201ENST00000417545 PEG3Q9GZU2 1588 aa15.17■□□□□ 0.02
TRIM48-201ENST00000417545 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
TRIM48-201ENST00000417545 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
TRIM48-201ENST00000417545 SUPT5HO00267 1087 aaKnown RBP15.14■□□□□ 0.01
TRIM48-201ENST00000417545 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
TRIM48-201ENST00000417545 POTEDQ86YR6 584 aa15.11■□□□□ 0.01
TRIM48-201ENST00000417545 NCAPD3P42695 1498 aa15.1■□□□□ 0.01
TRIM48-201ENST00000417545 TOP2AP11388 1531 aaKnown RBP15.04■□□□□ -0
TRIM48-201ENST00000417545 CCDC88BA6NC98 1476 aa14.83□□□□□ -0.04
TRIM48-201ENST00000417545 LAMC3Q9Y6N6 1575 aa14.75□□□□□ -0.05
TRIM48-201ENST00000417545 PRDM2Q13029 1718 aa14.71□□□□□ -0.05
TRIM48-201ENST00000417545 CADPSQ9ULU8 1353 aa14.71□□□□□ -0.05
TRIM48-201ENST00000417545 NESP48681 1621 aa14.7□□□□□ -0.06
TRIM48-201ENST00000417545 CFTRP13569 1480 aa14.66□□□□□ -0.06
TRIM48-201ENST00000417545 ERCC6Q03468 1493 aa14.64□□□□□ -0.07
TRIM48-201ENST00000417545 PDS5BQ9NTI5 1447 aa14.63□□□□□ -0.07
TRIM48-201ENST00000417545 KIF21AQ7Z4S6 1674 aa14.61□□□□□ -0.07
TRIM48-201ENST00000417545 FANCD2Q9BXW9 1451 aa14.58□□□□□ -0.08
TRIM48-201ENST00000417545 CEP164Q9UPV0 1460 aa14.57□□□□□ -0.08
TRIM48-201ENST00000417545 MSH5O43196 834 aa14.55□□□□□ -0.08
TRIM48-201ENST00000417545 MRC2Q9UBG0 1479 aa14.46□□□□□ -0.09
TRIM48-201ENST00000417545 THOC2Q8NI27 1593 aaKnown RBP14.44□□□□□ -0.1
TRIM48-201ENST00000417545 ABCC8Q09428 1581 aa14.42□□□□□ -0.1
TRIM48-201ENST00000417545 DNMBPQ6XZF7 1577 aa14.41□□□□□ -0.1
TRIM48-201ENST00000417545 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
TRIM48-201ENST00000417545 WDR62O43379 1518 aa14.38□□□□□ -0.11
TRIM48-201ENST00000417545 URB2Q14146 1524 aaKnown RBP14.38□□□□□ -0.11
TRIM48-201ENST00000417545 TOPBP1Q92547 1522 aa14.37□□□□□ -0.11
TRIM48-201ENST00000417545 CUX1P39880 1505 aa14.34□□□□□ -0.11
TRIM48-201ENST00000417545 BIVM-ERCC5R4GMW8 1640 aa14.34□□□□□ -0.11
TRIM48-201ENST00000417545 SYNJ1O43426 1573 aa14.33□□□□□ -0.12
TRIM48-201ENST00000417545 TOP2BQ02880 1626 aa14.32□□□□□ -0.12
TRIM48-201ENST00000417545 CUX2O14529 1486 aa14.31□□□□□ -0.12
TRIM48-201ENST00000417545 FGD5Q6ZNL6 1462 aa14.29□□□□□ -0.12
TRIM48-201ENST00000417545 TRIM41Q8WV44 630 aa14.28□□□□□ -0.12
TRIM48-201ENST00000417545 PIAS4Q8N2W9 510 aaPredicted RBP14.26□□□□□ -0.13
TRIM48-201ENST00000417545 POLA1P09884 1462 aaPredicted RBP14.25□□□□□ -0.13
TRIM48-201ENST00000417545 IFT140Q96RY7 1462 aa14.22□□□□□ -0.13
TRIM48-201ENST00000417545 SOGA1O94964 1423 aa14.22□□□□□ -0.13
TRIM48-201ENST00000417545 RAD54L2Q9Y4B4 1467 aa14.18□□□□□ -0.14
TRIM48-201ENST00000417545 TARBP1Q13395 1621 aaKnown RBP14.17□□□□□ -0.14
TRIM48-201ENST00000417545 WDR97A6NE52 1622 aa14.16□□□□□ -0.14
TRIM48-201ENST00000417545 ABCA10Q8WWZ4 1543 aa14.13□□□□□ -0.15
TRIM48-201ENST00000417545 EIF4G3O43432 1585 aaKnown RBP14.12□□□□□ -0.15
TRIM48-201ENST00000417545 ZNF608Q9ULD9 1512 aaPredicted RBP14.09□□□□□ -0.15
TRIM48-201ENST00000417545 PBRM1Q86U86 1689 aa14.09□□□□□ -0.15
TRIM48-201ENST00000417545 TDRD9Q8NDG6 1382 aaKnown RBP14.09□□□□□ -0.15
TRIM48-201ENST00000417545 KIF27Q86VH2 1401 aa14.08□□□□□ -0.16
TRIM48-201ENST00000417545 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
TRIM48-201ENST00000417545 GAPVD1Q14C86 1478 aa14.07□□□□□ -0.16
TRIM48-201ENST00000417545 AQRO60306 1485 aaKnown RBP eCLIP14.06□□□□□ -0.16
TRIM48-201ENST00000417545 PPP6R1Q9UPN7 881 aa14.04□□□□□ -0.16
TRIM48-201ENST00000417545 GRIN2BQ13224 1484 aa14.03□□□□□ -0.16
TRIM48-201ENST00000417545 FAM9AQ8IZU1 332 aaPredicted RBP14□□□□□ -0.17
TRIM48-201ENST00000417545 EEA1Q15075 1411 aa14□□□□□ -0.17
TRIM48-201ENST00000417545 ERICH3Q5RHP9 1530 aa14□□□□□ -0.17
TRIM48-201ENST00000417545 SNAPC4Q5SXM2 1469 aa13.98□□□□□ -0.17
TRIM48-201ENST00000417545 CUL7Q14999 1698 aa13.98□□□□□ -0.17
TRIM48-201ENST00000417545 MAGI1Q96QZ7 1491 aaPredicted RBP13.97□□□□□ -0.17
TRIM48-201ENST00000417545 ADRA2BP18089 450 aa13.97□□□□□ -0.17
TRIM48-201ENST00000417545 RUSC2Q8N2Y8 1516 aa13.97□□□□□ -0.17
TRIM48-201ENST00000417545 ADAMTS12P58397 1594 aa13.94□□□□□ -0.18
TRIM48-201ENST00000417545 FBLN2P98095 1184 aa13.94□□□□□ -0.18
TRIM48-201ENST00000417545 CHD1O14646 1710 aa13.92□□□□□ -0.18
TRIM48-201ENST00000417545 CHMP7Q8WUX9 453 aaPredicted RBP13.91□□□□□ -0.18
TRIM48-201ENST00000417545 FHAD1B1AJZ9 1412 aa13.91□□□□□ -0.18
TRIM48-201ENST00000417545 PLPPR3Q6T4P5 718 aa13.9□□□□□ -0.18
TRIM48-201ENST00000417545 CSRNP3Q8WYN3 585 aa13.9□□□□□ -0.18
TRIM48-201ENST00000417545 SYNJ2O15056 1496 aa13.9□□□□□ -0.18
TRIM48-201ENST00000417545 IGF1RP08069 1367 aa13.9□□□□□ -0.18
TRIM48-201ENST00000417545 CARMIL1Q5VZK9 1371 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms