RNA–Protein interactions for RNA: ENST00000414017.5

HLA-DMB-257, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 766 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-257ENST00000414017 NISCHQ9Y2I1 1504 aa24.74■■□□□ 1.55
HLA-DMB-257ENST00000414017 CCDC180Q9P1Z9 1646 aa21.84■■□□□ 1.09
HLA-DMB-257ENST00000414017 ABCC9O60706 1549 aa21.32■■□□□ 1
HLA-DMB-257ENST00000414017 DCAF8L2P0C7V8 631 aa20.81■□□□□ 0.92
HLA-DMB-257ENST00000414017 AEBP2Q6ZN18 517 aaPredicted RBP20.7■□□□□ 0.9
HLA-DMB-257ENST00000414017 ZCCHC6Q5VYS8 1495 aaKnown RBP20.65■□□□□ 0.9
HLA-DMB-257ENST00000414017 RB1CC1Q8TDY2 1594 aa20.51■□□□□ 0.87
HLA-DMB-257ENST00000414017 NACADO15069 1562 aa20.51■□□□□ 0.87
HLA-DMB-257ENST00000414017 DCAF1Q9Y4B6 1507 aa20.4■□□□□ 0.86
HLA-DMB-257ENST00000414017 MYO15BQ96JP2 1530 aa20.37■□□□□ 0.85
HLA-DMB-257ENST00000414017 SCRIBQ14160 1630 aa20.09■□□□□ 0.81
HLA-DMB-257ENST00000414017 UNC13AQ9UPW8 1703 aa20.03■□□□□ 0.8
HLA-DMB-257ENST00000414017 PABPN1Q86U42 306 aaKnown RBP eCLIP20■□□□□ 0.79
HLA-DMB-257ENST00000414017 SHROOM4Q9ULL8 1493 aa19.89■□□□□ 0.77
HLA-DMB-257ENST00000414017 BICRAQ9NZM4 1560 aa19.85■□□□□ 0.77
HLA-DMB-257ENST00000414017 CHIC1Q5VXU3 224 aa19.61■□□□□ 0.73
HLA-DMB-257ENST00000414017 EIF4G1Q04637 1599 aaKnown RBP19.35■□□□□ 0.69
HLA-DMB-257ENST00000414017 DNAJC5BQ9UF47 199 aa19.33■□□□□ 0.68
HLA-DMB-257ENST00000414017 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
HLA-DMB-257ENST00000414017 CC2D2AQ9P2K1 1620 aa19.23■□□□□ 0.67
HLA-DMB-257ENST00000414017 BAZ1AQ9NRL2 1556 aaPredicted RBP19.16■□□□□ 0.66
HLA-DMB-257ENST00000414017 SMARCA4P51532 1647 aa19.16■□□□□ 0.66
HLA-DMB-257ENST00000414017 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
HLA-DMB-257ENST00000414017 ATAD2BQ9ULI0 1458 aa19■□□□□ 0.63
HLA-DMB-257ENST00000414017 SMARCA2P51531 1590 aa18.98■□□□□ 0.63
HLA-DMB-257ENST00000414017 RSF1Q96T23 1441 aaPredicted RBP18.96■□□□□ 0.63
HLA-DMB-257ENST00000414017 WIZO95785 1651 aa18.93■□□□□ 0.62
HLA-DMB-257ENST00000414017 NCAPD3P42695 1498 aa18.91■□□□□ 0.62
HLA-DMB-257ENST00000414017 BAZ1BQ9UIG0 1483 aaKnown RBP18.9■□□□□ 0.62
HLA-DMB-257ENST00000414017 PEG3Q9GZU2 1588 aa18.89■□□□□ 0.61
HLA-DMB-257ENST00000414017 HMGXB3Q12766 1538 aa18.84■□□□□ 0.61
HLA-DMB-257ENST00000414017 SUPT5HO00267 1087 aaKnown RBP18.83■□□□□ 0.6
HLA-DMB-257ENST00000414017 TOP2AP11388 1531 aaKnown RBP18.71■□□□□ 0.59
HLA-DMB-257ENST00000414017 CCDC88BA6NC98 1476 aa18.52■□□□□ 0.55
HLA-DMB-257ENST00000414017 NESP48681 1621 aa18.49■□□□□ 0.55
HLA-DMB-257ENST00000414017 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
HLA-DMB-257ENST00000414017 LAMC3Q9Y6N6 1575 aa18.4■□□□□ 0.54
HLA-DMB-257ENST00000414017 ERCC6Q03468 1493 aa18.37■□□□□ 0.53
HLA-DMB-257ENST00000414017 CFTRP13569 1480 aa18.33■□□□□ 0.53
HLA-DMB-257ENST00000414017 PDS5BQ9NTI5 1447 aa18.31■□□□□ 0.52
HLA-DMB-257ENST00000414017 KIF21AQ7Z4S6 1674 aa18.25■□□□□ 0.51
HLA-DMB-257ENST00000414017 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
HLA-DMB-257ENST00000414017 PRDM2Q13029 1718 aa18.2■□□□□ 0.5
HLA-DMB-257ENST00000414017 CEP164Q9UPV0 1460 aa18.2■□□□□ 0.5
HLA-DMB-257ENST00000414017 MRC2Q9UBG0 1479 aa18.11■□□□□ 0.49
HLA-DMB-257ENST00000414017 THOC2Q8NI27 1593 aaKnown RBP18.09■□□□□ 0.49
HLA-DMB-257ENST00000414017 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
HLA-DMB-257ENST00000414017 WDR62O43379 1518 aa18■□□□□ 0.47
HLA-DMB-257ENST00000414017 CUX2O14529 1486 aa17.98■□□□□ 0.47
HLA-DMB-257ENST00000414017 TOPBP1Q92547 1522 aa17.96■□□□□ 0.47
HLA-DMB-257ENST00000414017 ABCC8Q09428 1581 aa17.96■□□□□ 0.46
HLA-DMB-257ENST00000414017 DNMBPQ6XZF7 1577 aa17.95■□□□□ 0.46
HLA-DMB-257ENST00000414017 CUX1P39880 1505 aa17.91■□□□□ 0.46
HLA-DMB-257ENST00000414017 WRNQ14191 1432 aaPredicted RBP eCLIP17.89■□□□□ 0.46
HLA-DMB-257ENST00000414017 SENP3Q9H4L4 574 aaPredicted RBP17.87■□□□□ 0.45
HLA-DMB-257ENST00000414017 SYNJ1O43426 1573 aa17.83■□□□□ 0.45
HLA-DMB-257ENST00000414017 FGD5Q6ZNL6 1462 aa17.83■□□□□ 0.45
HLA-DMB-257ENST00000414017 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
HLA-DMB-257ENST00000414017 RAD54L2Q9Y4B4 1467 aa17.8■□□□□ 0.44
HLA-DMB-257ENST00000414017 TOP2BQ02880 1626 aa17.79■□□□□ 0.44
HLA-DMB-257ENST00000414017 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
HLA-DMB-257ENST00000414017 SOGA1O94964 1423 aa17.78■□□□□ 0.44
HLA-DMB-257ENST00000414017 BIVM-ERCC5R4GMW8 1640 aa17.77■□□□□ 0.44
HLA-DMB-257ENST00000414017 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
HLA-DMB-257ENST00000414017 TRIM41Q8WV44 630 aa17.71■□□□□ 0.43
HLA-DMB-257ENST00000414017 TARBP1Q13395 1621 aaKnown RBP17.71■□□□□ 0.43
HLA-DMB-257ENST00000414017 TDRD9Q8NDG6 1382 aaKnown RBP17.68■□□□□ 0.42
HLA-DMB-257ENST00000414017 AQRO60306 1485 aaKnown RBP eCLIP17.67■□□□□ 0.42
HLA-DMB-257ENST00000414017 EIF4G3O43432 1585 aaKnown RBP17.64■□□□□ 0.41
HLA-DMB-257ENST00000414017 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
HLA-DMB-257ENST00000414017 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
HLA-DMB-257ENST00000414017 GAPVD1Q14C86 1478 aa17.56■□□□□ 0.4
HLA-DMB-257ENST00000414017 ABCA5Q8WWZ7 1642 aa17.53■□□□□ 0.4
HLA-DMB-257ENST00000414017 GRIN2BQ13224 1484 aa17.52■□□□□ 0.4
HLA-DMB-257ENST00000414017 FBLN2P98095 1184 aa17.52■□□□□ 0.4
HLA-DMB-257ENST00000414017 PHF23Q9BUL5 403 aaPredicted RBP17.52■□□□□ 0.4
HLA-DMB-257ENST00000414017 PBRM1Q86U86 1689 aa17.51■□□□□ 0.39
HLA-DMB-257ENST00000414017 SNAPC4Q5SXM2 1469 aa17.5■□□□□ 0.39
HLA-DMB-257ENST00000414017 KIF27Q86VH2 1401 aa17.5■□□□□ 0.39
HLA-DMB-257ENST00000414017 RUSC2Q8N2Y8 1516 aa17.45■□□□□ 0.38
HLA-DMB-257ENST00000414017 CHMP7Q8WUX9 453 aaPredicted RBP17.44■□□□□ 0.38
HLA-DMB-257ENST00000414017 FAM9AQ8IZU1 332 aaPredicted RBP17.43■□□□□ 0.38
HLA-DMB-257ENST00000414017 MAGI1Q96QZ7 1491 aaPredicted RBP17.43■□□□□ 0.38
HLA-DMB-257ENST00000414017 ERICH3Q5RHP9 1530 aa17.41■□□□□ 0.38
HLA-DMB-257ENST00000414017 IGF1RP08069 1367 aa17.39■□□□□ 0.37
HLA-DMB-257ENST00000414017 CHD1O14646 1710 aa17.38■□□□□ 0.37
HLA-DMB-257ENST00000414017 SYNJ2O15056 1496 aa17.37■□□□□ 0.37
HLA-DMB-257ENST00000414017 ADAMTS12P58397 1594 aa17.37■□□□□ 0.37
HLA-DMB-257ENST00000414017 FHAD1B1AJZ9 1412 aa17.36■□□□□ 0.37
HLA-DMB-257ENST00000414017 OSCARQ8IYS5 282 aa17.34■□□□□ 0.37
HLA-DMB-257ENST00000414017 CARMIL1Q5VZK9 1371 aa17.32■□□□□ 0.36
HLA-DMB-257ENST00000414017 CUL7Q14999 1698 aa17.31■□□□□ 0.36
HLA-DMB-257ENST00000414017 GRIN2AQ12879 1464 aa17.3■□□□□ 0.36
HLA-DMB-257ENST00000414017 CSRNP3Q8WYN3 585 aa17.29■□□□□ 0.36
HLA-DMB-257ENST00000414017 EEA1Q15075 1411 aa17.28■□□□□ 0.36
HLA-DMB-257ENST00000414017 EHMT2Q96KQ7 1210 aa17.27■□□□□ 0.36
HLA-DMB-257ENST00000414017 RAPGEF2Q9Y4G8 1499 aa17.23■□□□□ 0.35
HLA-DMB-257ENST00000414017 CEP170Q5SW79 1584 aa17.2■□□□□ 0.34
HLA-DMB-257ENST00000414017 DNAJC5Q9H3Z4 198 aa17.19■□□□□ 0.34
HLA-DMB-257ENST00000414017 PRXQ9BXM0 1461 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms