RNA–Protein interactions for RNA: ENST00000413374.1

NCKIPSD-202, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-202ENST00000413374 NISCHQ9Y2I1 1504 aa24.8■■□□□ 1.56
NCKIPSD-202ENST00000413374 ABCC9O60706 1549 aa21.96■■□□□ 1.11
NCKIPSD-202ENST00000413374 CCDC180Q9P1Z9 1646 aa21.95■■□□□ 1.1
NCKIPSD-202ENST00000413374 DCAF8L2P0C7V8 631 aa21.13■□□□□ 0.97
NCKIPSD-202ENST00000413374 RB1CC1Q8TDY2 1594 aa20.88■□□□□ 0.93
NCKIPSD-202ENST00000413374 NACADO15069 1562 aa20.79■□□□□ 0.92
NCKIPSD-202ENST00000413374 PABPN1Q86U42 306 aaKnown RBP eCLIP20.63■□□□□ 0.89
NCKIPSD-202ENST00000413374 ZCCHC6Q5VYS8 1495 aaKnown RBP20.57■□□□□ 0.88
NCKIPSD-202ENST00000413374 MYO15BQ96JP2 1530 aa20.53■□□□□ 0.88
NCKIPSD-202ENST00000413374 DNAJC5BQ9UF47 199 aa20.45■□□□□ 0.86
NCKIPSD-202ENST00000413374 DCAF1Q9Y4B6 1507 aa20.4■□□□□ 0.86
NCKIPSD-202ENST00000413374 UNC13AQ9UPW8 1703 aa20.3■□□□□ 0.84
NCKIPSD-202ENST00000413374 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
NCKIPSD-202ENST00000413374 SCRIBQ14160 1630 aa20.2■□□□□ 0.82
NCKIPSD-202ENST00000413374 SHROOM4Q9ULL8 1493 aa19.91■□□□□ 0.78
NCKIPSD-202ENST00000413374 EIF4G1Q04637 1599 aaKnown RBP19.76■□□□□ 0.75
NCKIPSD-202ENST00000413374 CC2D2AQ9P2K1 1620 aa19.74■□□□□ 0.75
NCKIPSD-202ENST00000413374 CECR2Q9BXF3 1484 aa19.71■□□□□ 0.75
NCKIPSD-202ENST00000413374 ATAD2BQ9ULI0 1458 aa19.26■□□□□ 0.67
NCKIPSD-202ENST00000413374 NCAPD3P42695 1498 aa19.25■□□□□ 0.67
NCKIPSD-202ENST00000413374 SMARCA4P51532 1647 aa19.23■□□□□ 0.67
NCKIPSD-202ENST00000413374 BAZ1AQ9NRL2 1556 aaPredicted RBP19.19■□□□□ 0.66
NCKIPSD-202ENST00000413374 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
NCKIPSD-202ENST00000413374 SMARCA2P51531 1590 aa19.14■□□□□ 0.65
NCKIPSD-202ENST00000413374 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
NCKIPSD-202ENST00000413374 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
NCKIPSD-202ENST00000413374 PEG3Q9GZU2 1588 aa18.98■□□□□ 0.63
NCKIPSD-202ENST00000413374 NESP48681 1621 aa18.94■□□□□ 0.62
NCKIPSD-202ENST00000413374 ERCC6Q03468 1493 aa18.92■□□□□ 0.62
NCKIPSD-202ENST00000413374 WIZO95785 1651 aa18.9■□□□□ 0.62
NCKIPSD-202ENST00000413374 RSF1Q96T23 1441 aaPredicted RBP18.9■□□□□ 0.62
NCKIPSD-202ENST00000413374 CADPSQ9ULU8 1353 aa18.74■□□□□ 0.59
NCKIPSD-202ENST00000413374 LAMC3Q9Y6N6 1575 aa18.71■□□□□ 0.59
NCKIPSD-202ENST00000413374 PDS5BQ9NTI5 1447 aa18.69■□□□□ 0.58
NCKIPSD-202ENST00000413374 CUX2O14529 1486 aa18.68■□□□□ 0.58
NCKIPSD-202ENST00000413374 TOP2AP11388 1531 aaKnown RBP18.64■□□□□ 0.58
NCKIPSD-202ENST00000413374 KIF21AQ7Z4S6 1674 aa18.55■□□□□ 0.56
NCKIPSD-202ENST00000413374 CCDC88BA6NC98 1476 aa18.53■□□□□ 0.56
NCKIPSD-202ENST00000413374 CFTRP13569 1480 aa18.53■□□□□ 0.56
NCKIPSD-202ENST00000413374 THOC2Q8NI27 1593 aaKnown RBP18.52■□□□□ 0.56
NCKIPSD-202ENST00000413374 FANCD2Q9BXW9 1451 aa18.51■□□□□ 0.55
NCKIPSD-202ENST00000413374 DNAJC5Q9H3Z4 198 aa18.5■□□□□ 0.55
NCKIPSD-202ENST00000413374 MRC2Q9UBG0 1479 aa18.48■□□□□ 0.55
NCKIPSD-202ENST00000413374 CEP164Q9UPV0 1460 aa18.47■□□□□ 0.55
NCKIPSD-202ENST00000413374 SUPT5HO00267 1087 aaKnown RBP18.47■□□□□ 0.55
NCKIPSD-202ENST00000413374 WDR62O43379 1518 aa18.37■□□□□ 0.53
NCKIPSD-202ENST00000413374 URB2Q14146 1524 aaKnown RBP18.33■□□□□ 0.52
NCKIPSD-202ENST00000413374 TOPBP1Q92547 1522 aa18.16■□□□□ 0.5
NCKIPSD-202ENST00000413374 PRDM2Q13029 1718 aa18.14■□□□□ 0.49
NCKIPSD-202ENST00000413374 ABCC8Q09428 1581 aa18.1■□□□□ 0.49
NCKIPSD-202ENST00000413374 ZNF608Q9ULD9 1512 aaPredicted RBP18.09■□□□□ 0.49
NCKIPSD-202ENST00000413374 IFT140Q96RY7 1462 aa18.09■□□□□ 0.49
NCKIPSD-202ENST00000413374 DNMBPQ6XZF7 1577 aa18.07■□□□□ 0.48
NCKIPSD-202ENST00000413374 OSCARQ8IYS5 282 aa18.05■□□□□ 0.48
NCKIPSD-202ENST00000413374 RAD54L2Q9Y4B4 1467 aa18.01■□□□□ 0.47
NCKIPSD-202ENST00000413374 AQRO60306 1485 aaKnown RBP eCLIP18.01■□□□□ 0.47
NCKIPSD-202ENST00000413374 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
NCKIPSD-202ENST00000413374 SOGA1O94964 1423 aa18■□□□□ 0.47
NCKIPSD-202ENST00000413374 TDRD9Q8NDG6 1382 aaKnown RBP17.98■□□□□ 0.47
NCKIPSD-202ENST00000413374 CUX1P39880 1505 aa17.96■□□□□ 0.47
NCKIPSD-202ENST00000413374 FBLN2P98095 1184 aa17.95■□□□□ 0.46
NCKIPSD-202ENST00000413374 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
NCKIPSD-202ENST00000413374 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
NCKIPSD-202ENST00000413374 TARBP1Q13395 1621 aaKnown RBP17.91■□□□□ 0.46
NCKIPSD-202ENST00000413374 EIF4G3O43432 1585 aaKnown RBP17.89■□□□□ 0.45
NCKIPSD-202ENST00000413374 CHMP7Q8WUX9 453 aaPredicted RBP17.81■□□□□ 0.44
NCKIPSD-202ENST00000413374 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
NCKIPSD-202ENST00000413374 SNAPC4Q5SXM2 1469 aa17.77■□□□□ 0.44
NCKIPSD-202ENST00000413374 GRIN2BQ13224 1484 aa17.75■□□□□ 0.43
NCKIPSD-202ENST00000413374 GAPVD1Q14C86 1478 aa17.73■□□□□ 0.43
NCKIPSD-202ENST00000413374 SYNJ1O43426 1573 aa17.72■□□□□ 0.43
NCKIPSD-202ENST00000413374 ABCA10Q8WWZ4 1543 aa17.72■□□□□ 0.43
NCKIPSD-202ENST00000413374 TOP2BQ02880 1626 aa17.69■□□□□ 0.42
NCKIPSD-202ENST00000413374 CYB5RLQ6IPT4 315 aa17.67■□□□□ 0.42
NCKIPSD-202ENST00000413374 MAGI1Q96QZ7 1491 aaPredicted RBP17.67■□□□□ 0.42
NCKIPSD-202ENST00000413374 CHD1O14646 1710 aa17.67■□□□□ 0.42
NCKIPSD-202ENST00000413374 WDR97A6NE52 1622 aa17.65■□□□□ 0.42
NCKIPSD-202ENST00000413374 BIVM-ERCC5R4GMW8 1640 aa17.64■□□□□ 0.41
NCKIPSD-202ENST00000413374 SYNJ2O15056 1496 aa17.63■□□□□ 0.41
NCKIPSD-202ENST00000413374 ARHGEF11O15085 1522 aa17.63■□□□□ 0.41
NCKIPSD-202ENST00000413374 RIMBP3CA6NJZ7 1639 aa17.63■□□□□ 0.41
NCKIPSD-202ENST00000413374 RIMBP3BA6NNM3 1639 aa17.63■□□□□ 0.41
NCKIPSD-202ENST00000413374 RIMBP3Q9UFD9 1639 aa17.63■□□□□ 0.41
NCKIPSD-202ENST00000413374 ABCA5Q8WWZ7 1642 aa17.59■□□□□ 0.41
NCKIPSD-202ENST00000413374 PBRM1Q86U86 1689 aa17.56■□□□□ 0.4
NCKIPSD-202ENST00000413374 FHAD1B1AJZ9 1412 aa17.52■□□□□ 0.4
NCKIPSD-202ENST00000413374 CLASP1Q7Z460 1538 aa17.51■□□□□ 0.39
NCKIPSD-202ENST00000413374 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
NCKIPSD-202ENST00000413374 ARAP1Q96P48 1450 aa17.5■□□□□ 0.39
NCKIPSD-202ENST00000413374 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
NCKIPSD-202ENST00000413374 ADAMTS12P58397 1594 aa17.46■□□□□ 0.39
NCKIPSD-202ENST00000413374 IGF1RP08069 1367 aa17.46■□□□□ 0.39
NCKIPSD-202ENST00000413374 KIF27Q86VH2 1401 aa17.45■□□□□ 0.38
NCKIPSD-202ENST00000413374 NUP160Q12769 1436 aa17.42■□□□□ 0.38
NCKIPSD-202ENST00000413374 CEP170Q5SW79 1584 aa17.41■□□□□ 0.38
NCKIPSD-202ENST00000413374 TRHP20396 242 aaPredicted RBP17.41■□□□□ 0.38
NCKIPSD-202ENST00000413374 JPH4Q96JJ6 628 aa17.39■□□□□ 0.37
NCKIPSD-202ENST00000413374 CARMIL1Q5VZK9 1371 aa17.35■□□□□ 0.37
NCKIPSD-202ENST00000413374 ERCC6L2Q5T890 1561 aa17.35■□□□□ 0.37
NCKIPSD-202ENST00000413374 PRG4Q92954 1404 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms