RNA–Protein interactions for RNA: ENST00000412686.5

CPSF4-202, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 745 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-202ENST00000412686 NISCHQ9Y2I1 1504 aa18.71■□□□□ 0.59
CPSF4-202ENST00000412686 AEBP2Q6ZN18 517 aaPredicted RBP17.57■□□□□ 0.4
CPSF4-202ENST00000412686 CHIC1Q5VXU3 224 aa17.09■□□□□ 0.33
CPSF4-202ENST00000412686 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
CPSF4-202ENST00000412686 ABCC9O60706 1549 aa16.24■□□□□ 0.19
CPSF4-202ENST00000412686 DCAF8L2P0C7V8 631 aa15.62■□□□□ 0.09
CPSF4-202ENST00000412686 ZCCHC6Q5VYS8 1495 aaKnown RBP15.62■□□□□ 0.09
CPSF4-202ENST00000412686 RB1CC1Q8TDY2 1594 aa15.58■□□□□ 0.09
CPSF4-202ENST00000412686 NACADO15069 1562 aa15.58■□□□□ 0.08
CPSF4-202ENST00000412686 MYO15BQ96JP2 1530 aa15.46■□□□□ 0.07
CPSF4-202ENST00000412686 DCAF1Q9Y4B6 1507 aa15.44■□□□□ 0.06
CPSF4-202ENST00000412686 UNC13AQ9UPW8 1703 aa15.32■□□□□ 0.04
CPSF4-202ENST00000412686 SCRIBQ14160 1630 aa15.22■□□□□ 0.03
CPSF4-202ENST00000412686 PABPN1Q86U42 306 aaKnown RBP eCLIP15.18■□□□□ 0.02
CPSF4-202ENST00000412686 BICRAQ9NZM4 1560 aa15.17■□□□□ 0.02
CPSF4-202ENST00000412686 PHF23Q9BUL5 403 aaPredicted RBP14.99□□□□□ -0.01
CPSF4-202ENST00000412686 SENP3Q9H4L4 574 aaPredicted RBP14.97□□□□□ -0.01
CPSF4-202ENST00000412686 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
CPSF4-202ENST00000412686 DNAJC5BQ9UF47 199 aa14.85□□□□□ -0.03
CPSF4-202ENST00000412686 EIF4G1Q04637 1599 aaKnown RBP14.74□□□□□ -0.05
CPSF4-202ENST00000412686 CC2D2AQ9P2K1 1620 aa14.68□□□□□ -0.06
CPSF4-202ENST00000412686 CECR2Q9BXF3 1484 aa14.62□□□□□ -0.07
CPSF4-202ENST00000412686 SMARCA4P51532 1647 aa14.53□□□□□ -0.08
CPSF4-202ENST00000412686 BAZ1AQ9NRL2 1556 aaPredicted RBP14.48□□□□□ -0.09
CPSF4-202ENST00000412686 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
CPSF4-202ENST00000412686 ATAD2BQ9ULI0 1458 aa14.42□□□□□ -0.1
CPSF4-202ENST00000412686 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
CPSF4-202ENST00000412686 NCAPD3P42695 1498 aa14.37□□□□□ -0.11
CPSF4-202ENST00000412686 PEG3Q9GZU2 1588 aa14.35□□□□□ -0.11
CPSF4-202ENST00000412686 WIZO95785 1651 aa14.33□□□□□ -0.11
CPSF4-202ENST00000412686 HMGXB3Q12766 1538 aa14.31□□□□□ -0.12
CPSF4-202ENST00000412686 BAZ1BQ9UIG0 1483 aaKnown RBP14.3□□□□□ -0.12
CPSF4-202ENST00000412686 RSF1Q96T23 1441 aaPredicted RBP14.29□□□□□ -0.12
CPSF4-202ENST00000412686 TOP2AP11388 1531 aaKnown RBP14.14□□□□□ -0.15
CPSF4-202ENST00000412686 NESP48681 1621 aa14.08□□□□□ -0.15
CPSF4-202ENST00000412686 SUPT5HO00267 1087 aaKnown RBP14□□□□□ -0.17
CPSF4-202ENST00000412686 LAMC3Q9Y6N6 1575 aa13.99□□□□□ -0.17
CPSF4-202ENST00000412686 CCDC88BA6NC98 1476 aa13.98□□□□□ -0.17
CPSF4-202ENST00000412686 CADPSQ9ULU8 1353 aa13.96□□□□□ -0.18
CPSF4-202ENST00000412686 ERCC6Q03468 1493 aa13.94□□□□□ -0.18
CPSF4-202ENST00000412686 KIF21AQ7Z4S6 1674 aa13.92□□□□□ -0.18
CPSF4-202ENST00000412686 CFTRP13569 1480 aa13.89□□□□□ -0.19
CPSF4-202ENST00000412686 FOXD1Q16676 465 aa13.87□□□□□ -0.19
CPSF4-202ENST00000412686 PDS5BQ9NTI5 1447 aa13.86□□□□□ -0.19
CPSF4-202ENST00000412686 PLPPR3Q6T4P5 718 aa13.85□□□□□ -0.19
CPSF4-202ENST00000412686 THOC2Q8NI27 1593 aaKnown RBP13.84□□□□□ -0.19
CPSF4-202ENST00000412686 PRDM2Q13029 1718 aa13.84□□□□□ -0.19
CPSF4-202ENST00000412686 FANCD2Q9BXW9 1451 aa13.82□□□□□ -0.2
CPSF4-202ENST00000412686 CEP164Q9UPV0 1460 aa13.8□□□□□ -0.2
CPSF4-202ENST00000412686 MRC2Q9UBG0 1479 aa13.76□□□□□ -0.21
CPSF4-202ENST00000412686 CUX2O14529 1486 aa13.74□□□□□ -0.21
CPSF4-202ENST00000412686 WDR62O43379 1518 aa13.73□□□□□ -0.21
CPSF4-202ENST00000412686 URB2Q14146 1524 aaKnown RBP13.7□□□□□ -0.22
CPSF4-202ENST00000412686 TOPBP1Q92547 1522 aa13.62□□□□□ -0.23
CPSF4-202ENST00000412686 DNMBPQ6XZF7 1577 aa13.6□□□□□ -0.23
CPSF4-202ENST00000412686 CUX1P39880 1505 aa13.56□□□□□ -0.24
CPSF4-202ENST00000412686 ABCC8Q09428 1581 aa13.54□□□□□ -0.24
CPSF4-202ENST00000412686 POLA1P09884 1462 aaPredicted RBP13.51□□□□□ -0.25
CPSF4-202ENST00000412686 FGD5Q6ZNL6 1462 aa13.49□□□□□ -0.25
CPSF4-202ENST00000412686 SYNJ1O43426 1573 aa13.48□□□□□ -0.25
CPSF4-202ENST00000412686 ZNF608Q9ULD9 1512 aaPredicted RBP13.48□□□□□ -0.25
CPSF4-202ENST00000412686 IFT140Q96RY7 1462 aa13.48□□□□□ -0.25
CPSF4-202ENST00000412686 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
CPSF4-202ENST00000412686 TARBP1Q13395 1621 aaKnown RBP13.47□□□□□ -0.25
CPSF4-202ENST00000412686 WRNQ14191 1432 aaPredicted RBP eCLIP13.47□□□□□ -0.25
CPSF4-202ENST00000412686 BIVM-ERCC5R4GMW8 1640 aa13.45□□□□□ -0.26
CPSF4-202ENST00000412686 TOP2BQ02880 1626 aa13.43□□□□□ -0.26
CPSF4-202ENST00000412686 EIF4G3O43432 1585 aaKnown RBP13.43□□□□□ -0.26
CPSF4-202ENST00000412686 SOGA1O94964 1423 aa13.43□□□□□ -0.26
CPSF4-202ENST00000412686 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
CPSF4-202ENST00000412686 AQRO60306 1485 aaKnown RBP eCLIP13.39□□□□□ -0.273e-8■■■■■ 36.3
CPSF4-202ENST00000412686 TDRD9Q8NDG6 1382 aaKnown RBP13.37□□□□□ -0.27
CPSF4-202ENST00000412686 ABCA10Q8WWZ4 1543 aa13.34□□□□□ -0.27
CPSF4-202ENST00000412686 ABCA5Q8WWZ7 1642 aa13.31□□□□□ -0.28
CPSF4-202ENST00000412686 PBRM1Q86U86 1689 aa13.31□□□□□ -0.28
CPSF4-202ENST00000412686 GAPVD1Q14C86 1478 aa13.29□□□□□ -0.28
CPSF4-202ENST00000412686 SNAPC4Q5SXM2 1469 aa13.28□□□□□ -0.28
CPSF4-202ENST00000412686 CHD1O14646 1710 aa13.26□□□□□ -0.29
CPSF4-202ENST00000412686 GRIN2BQ13224 1484 aa13.26□□□□□ -0.29
CPSF4-202ENST00000412686 ADRA2BP18089 450 aa13.25□□□□□ -0.29
CPSF4-202ENST00000412686 DNAJC5Q9H3Z4 198 aa13.25□□□□□ -0.29
CPSF4-202ENST00000412686 PPP6R1Q9UPN7 881 aa13.25□□□□□ -0.29
CPSF4-202ENST00000412686 MAGI1Q96QZ7 1491 aaPredicted RBP13.21□□□□□ -0.3
CPSF4-202ENST00000412686 FBLN2P98095 1184 aa13.19□□□□□ -0.3
CPSF4-202ENST00000412686 ADAMTS12P58397 1594 aa13.19□□□□□ -0.3
CPSF4-202ENST00000412686 OSCARQ8IYS5 282 aa13.17□□□□□ -0.3
CPSF4-202ENST00000412686 TRIM41Q8WV44 630 aa13.17□□□□□ -0.3
CPSF4-202ENST00000412686 SYNJ2O15056 1496 aa13.16□□□□□ -0.3
CPSF4-202ENST00000412686 KIF27Q86VH2 1401 aa13.16□□□□□ -0.3
CPSF4-202ENST00000412686 ERICH3Q5RHP9 1530 aa13.16□□□□□ -0.3
CPSF4-202ENST00000412686 RUSC2Q8N2Y8 1516 aa13.15□□□□□ -0.3
CPSF4-202ENST00000412686 CHMP7Q8WUX9 453 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-202ENST00000412686 FHAD1B1AJZ9 1412 aa13.12□□□□□ -0.31
CPSF4-202ENST00000412686 GRIN2AQ12879 1464 aa13.11□□□□□ -0.31
CPSF4-202ENST00000412686 IGF1RP08069 1367 aa13.1□□□□□ -0.31
CPSF4-202ENST00000412686 CLASP1Q7Z460 1538 aa13.08□□□□□ -0.31
CPSF4-202ENST00000412686 CEP170Q5SW79 1584 aa13.07□□□□□ -0.32
CPSF4-202ENST00000412686 PIAS4Q8N2W9 510 aaPredicted RBP13.07□□□□□ -0.32
CPSF4-202ENST00000412686 CUL7Q14999 1698 aa13.07□□□□□ -0.32
CPSF4-202ENST00000412686 NUP160Q12769 1436 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms