RNA–Protein interactions for RNA: ENST00000412670.1

PHTF1-206, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 1 (best)

Gene PHTF1, Length 1,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-206ENST00000412670 NISCHQ9Y2I1 1504 aa25.2■■□□□ 1.62
PHTF1-206ENST00000412670 AEBP2Q6ZN18 517 aaPredicted RBP23.35■■□□□ 1.33
PHTF1-206ENST00000412670 CCDC180Q9P1Z9 1646 aa22.39■■□□□ 1.18
PHTF1-206ENST00000412670 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
PHTF1-206ENST00000412670 ABCC9O60706 1549 aa21.77■■□□□ 1.08
PHTF1-206ENST00000412670 NACADO15069 1562 aa21.07■□□□□ 0.96
PHTF1-206ENST00000412670 RB1CC1Q8TDY2 1594 aa21.06■□□□□ 0.96
PHTF1-206ENST00000412670 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
PHTF1-206ENST00000412670 ZCCHC6Q5VYS8 1495 aaKnown RBP21■□□□□ 0.95
PHTF1-206ENST00000412670 DCAF8L2P0C7V8 631 aa20.98■□□□□ 0.95
PHTF1-206ENST00000412670 DCAF1Q9Y4B6 1507 aa20.93■□□□□ 0.94
PHTF1-206ENST00000412670 UNC13AQ9UPW8 1703 aa20.44■□□□□ 0.86
PHTF1-206ENST00000412670 BICRAQ9NZM4 1560 aa20.34■□□□□ 0.85
PHTF1-206ENST00000412670 PABPN1Q86U42 306 aaKnown RBP eCLIP20.34■□□□□ 0.85
PHTF1-206ENST00000412670 SCRIBQ14160 1630 aa20.34■□□□□ 0.85
PHTF1-206ENST00000412670 SHROOM4Q9ULL8 1493 aa20.31■□□□□ 0.84
PHTF1-206ENST00000412670 SENP3Q9H4L4 574 aaPredicted RBP19.98■□□□□ 0.79
PHTF1-206ENST00000412670 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
PHTF1-206ENST00000412670 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.77
PHTF1-206ENST00000412670 CC2D2AQ9P2K1 1620 aa19.71■□□□□ 0.75
PHTF1-206ENST00000412670 PHF23Q9BUL5 403 aaPredicted RBP19.69■□□□□ 0.74
PHTF1-206ENST00000412670 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
PHTF1-206ENST00000412670 BAZ1AQ9NRL2 1556 aaPredicted RBP19.56■□□□□ 0.72
PHTF1-206ENST00000412670 SMARCA4P51532 1647 aa19.51■□□□□ 0.71
PHTF1-206ENST00000412670 NCAPD3P42695 1498 aa19.45■□□□□ 0.7
PHTF1-206ENST00000412670 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
PHTF1-206ENST00000412670 ATAD2BQ9ULI0 1458 aa19.42■□□□□ 0.7
PHTF1-206ENST00000412670 PEG3Q9GZU2 1588 aa19.38■□□□□ 0.69
PHTF1-206ENST00000412670 MROH2BQ7Z745 1585 aa19.36■□□□□ 0.69
PHTF1-206ENST00000412670 HMGXB3Q12766 1538 aa19.35■□□□□ 0.69
PHTF1-206ENST00000412670 BAZ1BQ9UIG0 1483 aaKnown RBP19.27■□□□□ 0.67
PHTF1-206ENST00000412670 RSF1Q96T23 1441 aaPredicted RBP19.21■□□□□ 0.67
PHTF1-206ENST00000412670 WIZO95785 1651 aa19.13■□□□□ 0.65
PHTF1-206ENST00000412670 TOP2AP11388 1531 aaKnown RBP19.01■□□□□ 0.63
PHTF1-206ENST00000412670 LAMC3Q9Y6N6 1575 aa18.91■□□□□ 0.62
PHTF1-206ENST00000412670 CADPSQ9ULU8 1353 aa18.88■□□□□ 0.61
PHTF1-206ENST00000412670 NESP48681 1621 aa18.83■□□□□ 0.61
PHTF1-206ENST00000412670 ERCC6Q03468 1493 aa18.82■□□□□ 0.6
PHTF1-206ENST00000412670 PDS5BQ9NTI5 1447 aa18.82■□□□□ 0.6
PHTF1-206ENST00000412670 CCDC88BA6NC98 1476 aa18.77■□□□□ 0.59
PHTF1-206ENST00000412670 CFTRP13569 1480 aa18.77■□□□□ 0.59
PHTF1-206ENST00000412670 SUPT5HO00267 1087 aaKnown RBP18.71■□□□□ 0.59
PHTF1-206ENST00000412670 CUX2O14529 1486 aa18.65■□□□□ 0.58
PHTF1-206ENST00000412670 FANCD2Q9BXW9 1451 aa18.61■□□□□ 0.57
PHTF1-206ENST00000412670 FOXD1Q16676 465 aa18.61■□□□□ 0.57
PHTF1-206ENST00000412670 KIF21AQ7Z4S6 1674 aa18.6■□□□□ 0.57
PHTF1-206ENST00000412670 CEP164Q9UPV0 1460 aa18.6■□□□□ 0.57
PHTF1-206ENST00000412670 THOC2Q8NI27 1593 aaKnown RBP18.57■□□□□ 0.56
PHTF1-206ENST00000412670 MRC2Q9UBG0 1479 aa18.57■□□□□ 0.56
PHTF1-206ENST00000412670 PRDM2Q13029 1718 aa18.56■□□□□ 0.56
PHTF1-206ENST00000412670 WDR62O43379 1518 aa18.49■□□□□ 0.55
PHTF1-206ENST00000412670 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
PHTF1-206ENST00000412670 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.53
PHTF1-206ENST00000412670 DNMBPQ6XZF7 1577 aa18.32■□□□□ 0.52
PHTF1-206ENST00000412670 TOPBP1Q92547 1522 aa18.32■□□□□ 0.52
PHTF1-206ENST00000412670 IFT140Q96RY7 1462 aa18.24■□□□□ 0.51
PHTF1-206ENST00000412670 CUX1P39880 1505 aa18.17■□□□□ 0.5
PHTF1-206ENST00000412670 POLA1P09884 1462 aaPredicted RBP18.16■□□□□ 0.5
PHTF1-206ENST00000412670 WRNQ14191 1432 aaPredicted RBP eCLIP18.13■□□□□ 0.49
PHTF1-206ENST00000412670 SOGA1O94964 1423 aa18.12■□□□□ 0.49
PHTF1-206ENST00000412670 FGD5Q6ZNL6 1462 aa18.12■□□□□ 0.49
PHTF1-206ENST00000412670 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
PHTF1-206ENST00000412670 WDR97A6NE52 1622 aa18.07■□□□□ 0.48
PHTF1-206ENST00000412670 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
PHTF1-206ENST00000412670 BIVM-ERCC5R4GMW8 1640 aa18.05■□□□□ 0.48
PHTF1-206ENST00000412670 ZNF608Q9ULD9 1512 aaPredicted RBP18.05■□□□□ 0.48
PHTF1-206ENST00000412670 RAD54L2Q9Y4B4 1467 aa18.04■□□□□ 0.48
PHTF1-206ENST00000412670 SYNJ1O43426 1573 aa18■□□□□ 0.47
PHTF1-206ENST00000412670 EIF4G3O43432 1585 aaKnown RBP18■□□□□ 0.47
PHTF1-206ENST00000412670 ABCA10Q8WWZ4 1543 aa17.99■□□□□ 0.47
PHTF1-206ENST00000412670 DNAJC5Q9H3Z4 198 aa17.99■□□□□ 0.47
PHTF1-206ENST00000412670 AQRO60306 1485 aaKnown RBP eCLIP17.98■□□□□ 0.47
PHTF1-206ENST00000412670 TDRD9Q8NDG6 1382 aaKnown RBP17.96■□□□□ 0.47
PHTF1-206ENST00000412670 GRIN2BQ13224 1484 aa17.91■□□□□ 0.46
PHTF1-206ENST00000412670 GAPVD1Q14C86 1478 aa17.9■□□□□ 0.46
PHTF1-206ENST00000412670 OSCARQ8IYS5 282 aa17.89■□□□□ 0.45
PHTF1-206ENST00000412670 MAGI1Q96QZ7 1491 aaPredicted RBP17.88■□□□□ 0.45
PHTF1-206ENST00000412670 ABCA5Q8WWZ7 1642 aa17.87■□□□□ 0.45
PHTF1-206ENST00000412670 SNAPC4Q5SXM2 1469 aa17.82■□□□□ 0.44
PHTF1-206ENST00000412670 ERICH3Q5RHP9 1530 aa17.79■□□□□ 0.44
PHTF1-206ENST00000412670 SYNJ2O15056 1496 aa17.79■□□□□ 0.44
PHTF1-206ENST00000412670 PBRM1Q86U86 1689 aa17.79■□□□□ 0.44
PHTF1-206ENST00000412670 CHMP7Q8WUX9 453 aaPredicted RBP17.78■□□□□ 0.44
PHTF1-206ENST00000412670 KIF27Q86VH2 1401 aa17.78■□□□□ 0.44
PHTF1-206ENST00000412670 FBLN2P98095 1184 aa17.76■□□□□ 0.43
PHTF1-206ENST00000412670 TRIM41Q8WV44 630 aa17.75■□□□□ 0.43
PHTF1-206ENST00000412670 FHAD1B1AJZ9 1412 aa17.72■□□□□ 0.43
PHTF1-206ENST00000412670 CHD1O14646 1710 aa17.72■□□□□ 0.43
PHTF1-206ENST00000412670 ADAMTS12P58397 1594 aa17.69■□□□□ 0.42
PHTF1-206ENST00000412670 IGF1RP08069 1367 aa17.66■□□□□ 0.42
PHTF1-206ENST00000412670 GRIN2AQ12879 1464 aa17.66■□□□□ 0.42
PHTF1-206ENST00000412670 CUL7Q14999 1698 aa17.62■□□□□ 0.41
PHTF1-206ENST00000412670 PLPPR3Q6T4P5 718 aa17.6■□□□□ 0.41
PHTF1-206ENST00000412670 NUP160Q12769 1436 aa17.6■□□□□ 0.41
PHTF1-206ENST00000412670 CLASP1Q7Z460 1538 aa17.6■□□□□ 0.41
PHTF1-206ENST00000412670 CARMIL1Q5VZK9 1371 aa17.58■□□□□ 0.4
PHTF1-206ENST00000412670 ARHGEF11O15085 1522 aa17.53■□□□□ 0.4
PHTF1-206ENST00000412670 EEA1Q15075 1411 aa17.53■□□□□ 0.4
PHTF1-206ENST00000412670 CEP170Q5SW79 1584 aa17.51■□□□□ 0.39
PHTF1-206ENST00000412670 MSH5O43196 834 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms