RNA–Protein interactions for RNA: ENST00000411934.6

RPE-204, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

TSL 1 (best) BASIC

Gene RPE, Length 792 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-204ENST00000411934 NISCHQ9Y2I1 1504 aa19.93■□□□□ 0.78
RPE-204ENST00000411934 AEBP2Q6ZN18 517 aaPredicted RBP18.64■□□□□ 0.57
RPE-204ENST00000411934 CCDC180Q9P1Z9 1646 aa17.79■□□□□ 0.44
RPE-204ENST00000411934 CHIC1Q5VXU3 224 aa17.6■□□□□ 0.41
RPE-204ENST00000411934 ABCC9O60706 1549 aa17.11■□□□□ 0.33
RPE-204ENST00000411934 MYO15BQ96JP2 1530 aa16.68■□□□□ 0.26
RPE-204ENST00000411934 NACADO15069 1562 aa16.67■□□□□ 0.26
RPE-204ENST00000411934 ZCCHC6Q5VYS8 1495 aaKnown RBP16.66■□□□□ 0.26
RPE-204ENST00000411934 RB1CC1Q8TDY2 1594 aa16.64■□□□□ 0.25
RPE-204ENST00000411934 DCAF1Q9Y4B6 1507 aa16.61■□□□□ 0.25
RPE-204ENST00000411934 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
RPE-204ENST00000411934 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
RPE-204ENST00000411934 UNC13AQ9UPW8 1703 aa16.2■□□□□ 0.18
RPE-204ENST00000411934 SHROOM4Q9ULL8 1493 aa16.12■□□□□ 0.17
RPE-204ENST00000411934 BICRAQ9NZM4 1560 aa16.08■□□□□ 0.16
RPE-204ENST00000411934 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
RPE-204ENST00000411934 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
RPE-204ENST00000411934 POTEDQ86YR6 584 aa15.86■□□□□ 0.13
RPE-204ENST00000411934 PHF23Q9BUL5 403 aaPredicted RBP15.82■□□□□ 0.12
RPE-204ENST00000411934 EIF4G1Q04637 1599 aaKnown RBP15.66■□□□□ 0.1
RPE-204ENST00000411934 CC2D2AQ9P2K1 1620 aa15.55■□□□□ 0.08
RPE-204ENST00000411934 DNAJC5BQ9UF47 199 aa15.53■□□□□ 0.08
RPE-204ENST00000411934 BAZ1AQ9NRL2 1556 aaPredicted RBP15.49■□□□□ 0.07
RPE-204ENST00000411934 SMARCA4P51532 1647 aa15.46■□□□□ 0.06
RPE-204ENST00000411934 CECR2Q9BXF3 1484 aa15.42■□□□□ 0.06
RPE-204ENST00000411934 SMARCA2P51531 1590 aa15.38■□□□□ 0.05
RPE-204ENST00000411934 PEG3Q9GZU2 1588 aa15.38■□□□□ 0.05
RPE-204ENST00000411934 NCAPD3P42695 1498 aa15.34■□□□□ 0.05
RPE-204ENST00000411934 HMGXB3Q12766 1538 aa15.33■□□□□ 0.05
RPE-204ENST00000411934 ATAD2BQ9ULI0 1458 aa15.33■□□□□ 0.04
RPE-204ENST00000411934 MROH2BQ7Z745 1585 aa15.3■□□□□ 0.04
RPE-204ENST00000411934 BAZ1BQ9UIG0 1483 aaKnown RBP15.21■□□□□ 0.03
RPE-204ENST00000411934 RSF1Q96T23 1441 aaPredicted RBP15.17■□□□□ 0.02
RPE-204ENST00000411934 FOXD1Q16676 465 aa15.14■□□□□ 0.01
RPE-204ENST00000411934 WIZO95785 1651 aa15.13■□□□□ 0.01
RPE-204ENST00000411934 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
RPE-204ENST00000411934 LAMC3Q9Y6N6 1575 aa14.96□□□□□ -0.01
RPE-204ENST00000411934 CADPSQ9ULU8 1353 aa14.86□□□□□ -0.03
RPE-204ENST00000411934 CFTRP13569 1480 aa14.82□□□□□ -0.04
RPE-204ENST00000411934 NESP48681 1621 aa14.82□□□□□ -0.04
RPE-204ENST00000411934 PDS5BQ9NTI5 1447 aa14.82□□□□□ -0.04
RPE-204ENST00000411934 CCDC88BA6NC98 1476 aa14.81□□□□□ -0.04
RPE-204ENST00000411934 ERCC6Q03468 1493 aa14.79□□□□□ -0.04
RPE-204ENST00000411934 PRDM2Q13029 1718 aa14.78□□□□□ -0.04
RPE-204ENST00000411934 KIF21AQ7Z4S6 1674 aa14.72□□□□□ -0.05
RPE-204ENST00000411934 CUX2O14529 1486 aa14.7□□□□□ -0.06
RPE-204ENST00000411934 THOC2Q8NI27 1593 aaKnown RBP14.7□□□□□ -0.06
RPE-204ENST00000411934 SUPT5HO00267 1087 aaKnown RBP14.69□□□□□ -0.06
RPE-204ENST00000411934 FANCD2Q9BXW9 1451 aa14.69□□□□□ -0.06
RPE-204ENST00000411934 CEP164Q9UPV0 1460 aa14.69□□□□□ -0.06
RPE-204ENST00000411934 MRC2Q9UBG0 1479 aa14.65□□□□□ -0.06
RPE-204ENST00000411934 MSH5O43196 834 aa14.65□□□□□ -0.06
RPE-204ENST00000411934 WDR62O43379 1518 aa14.63□□□□□ -0.07
RPE-204ENST00000411934 ABCC8Q09428 1581 aa14.56□□□□□ -0.08
RPE-204ENST00000411934 URB2Q14146 1524 aaKnown RBP14.52□□□□□ -0.08
RPE-204ENST00000411934 DNMBPQ6XZF7 1577 aa14.5□□□□□ -0.09
RPE-204ENST00000411934 TOPBP1Q92547 1522 aa14.46□□□□□ -0.09
RPE-204ENST00000411934 IFT140Q96RY7 1462 aa14.39□□□□□ -0.11
RPE-204ENST00000411934 CUX1P39880 1505 aa14.37□□□□□ -0.11
RPE-204ENST00000411934 WDR97A6NE52 1622 aa14.35□□□□□ -0.11
RPE-204ENST00000411934 POLA1P09884 1462 aaPredicted RBP14.35□□□□□ -0.11
RPE-204ENST00000411934 BIVM-ERCC5R4GMW8 1640 aa14.34□□□□□ -0.11
RPE-204ENST00000411934 TOP2BQ02880 1626 aa14.33□□□□□ -0.12
RPE-204ENST00000411934 WRNQ14191 1432 aaPredicted RBP eCLIP14.32□□□□□ -0.12
RPE-204ENST00000411934 TARBP1Q13395 1621 aaKnown RBP14.32□□□□□ -0.12
RPE-204ENST00000411934 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
RPE-204ENST00000411934 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
RPE-204ENST00000411934 SOGA1O94964 1423 aa14.25□□□□□ -0.13
RPE-204ENST00000411934 EIF4G3O43432 1585 aaKnown RBP14.25□□□□□ -0.13
RPE-204ENST00000411934 ABCA10Q8WWZ4 1543 aa14.24□□□□□ -0.13
RPE-204ENST00000411934 ZNF608Q9ULD9 1512 aaPredicted RBP14.22□□□□□ -0.13
RPE-204ENST00000411934 RAD54L2Q9Y4B4 1467 aa14.21□□□□□ -0.13
RPE-204ENST00000411934 ABCA5Q8WWZ7 1642 aa14.17□□□□□ -0.14
RPE-204ENST00000411934 GRIN2BQ13224 1484 aa14.14□□□□□ -0.15
RPE-204ENST00000411934 AQRO60306 1485 aaKnown RBP eCLIP14.13□□□□□ -0.152e-6■■□□□ 13.2
RPE-204ENST00000411934 MAGI1Q96QZ7 1491 aaPredicted RBP14.13□□□□□ -0.15
RPE-204ENST00000411934 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
RPE-204ENST00000411934 PBRM1Q86U86 1689 aa14.11□□□□□ -0.15
RPE-204ENST00000411934 TDRD9Q8NDG6 1382 aaKnown RBP14.1□□□□□ -0.15
RPE-204ENST00000411934 ERICH3Q5RHP9 1530 aa14.1□□□□□ -0.15
RPE-204ENST00000411934 SNAPC4Q5SXM2 1469 aa14.06□□□□□ -0.16
RPE-204ENST00000411934 SYNJ2O15056 1496 aa14.05□□□□□ -0.16
RPE-204ENST00000411934 KIF27Q86VH2 1401 aa14.04□□□□□ -0.16
RPE-204ENST00000411934 CHD1O14646 1710 aa14.02□□□□□ -0.16
RPE-204ENST00000411934 ADAMTS12P58397 1594 aa14.02□□□□□ -0.16
RPE-204ENST00000411934 PIAS4Q8N2W9 510 aaPredicted RBP14.02□□□□□ -0.17
RPE-204ENST00000411934 DNAJC5Q9H3Z4 198 aa14.01□□□□□ -0.17
RPE-204ENST00000411934 FHAD1B1AJZ9 1412 aa13.99□□□□□ -0.17
RPE-204ENST00000411934 CUL7Q14999 1698 aa13.99□□□□□ -0.17
RPE-204ENST00000411934 OSCARQ8IYS5 282 aa13.99□□□□□ -0.17
RPE-204ENST00000411934 GRIN2AQ12879 1464 aa13.95□□□□□ -0.18
RPE-204ENST00000411934 TRIM41Q8WV44 630 aa13.95□□□□□ -0.18
RPE-204ENST00000411934 CHMP7Q8WUX9 453 aaPredicted RBP13.93□□□□□ -0.18
RPE-204ENST00000411934 CLASP1Q7Z460 1538 aa13.92□□□□□ -0.18
RPE-204ENST00000411934 IGF1RP08069 1367 aa13.91□□□□□ -0.18
RPE-204ENST00000411934 NUP160Q12769 1436 aa13.9□□□□□ -0.18
RPE-204ENST00000411934 EEA1Q15075 1411 aa13.9□□□□□ -0.19
RPE-204ENST00000411934 FBLN2P98095 1184 aa13.88□□□□□ -0.19
RPE-204ENST00000411934 CEP170Q5SW79 1584 aa13.85□□□□□ -0.19
RPE-204ENST00000411934 CARMIL1Q5VZK9 1371 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms