RNA–Protein interactions for RNA: ENST00000410828.1

RNU4-53P-201, Transcript of RNA, U4 small nuclear 53, pseudogene, humanhuman

BASIC

Gene RNU4-53P, Length 140 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-53P-201ENST00000410828 NISCHQ9Y2I1 1504 aa6□□□□□ -1.45
RNU4-53P-201ENST00000410828 ABCC9O60706 1549 aa5.59□□□□□ -1.51
RNU4-53P-201ENST00000410828 DNAJC5BQ9UF47 199 aa5.4□□□□□ -1.54
RNU4-53P-201ENST00000410828 CCDC180Q9P1Z9 1646 aa5.37□□□□□ -1.55
RNU4-53P-201ENST00000410828 RB1CC1Q8TDY2 1594 aa5.24□□□□□ -1.57
RNU4-53P-201ENST00000410828 PABPN1Q86U42 306 aaKnown RBP eCLIP5.23□□□□□ -1.57
RNU4-53P-201ENST00000410828 DCAF8L2P0C7V8 631 aa5.21□□□□□ -1.58
RNU4-53P-201ENST00000410828 NACADO15069 1562 aa5.18□□□□□ -1.58
RNU4-53P-201ENST00000410828 DNAJC5Q9H3Z4 198 aa5.09□□□□□ -1.59
RNU4-53P-201ENST00000410828 MYO15BQ96JP2 1530 aa5.07□□□□□ -1.6
RNU4-53P-201ENST00000410828 CECR2Q9BXF3 1484 aa5.07□□□□□ -1.6
RNU4-53P-201ENST00000410828 BICRAQ9NZM4 1560 aa5.06□□□□□ -1.6
RNU4-53P-201ENST00000410828 SHROOM4Q9ULL8 1493 aa5.03□□□□□ -1.6
RNU4-53P-201ENST00000410828 CC2D2AQ9P2K1 1620 aa5.01□□□□□ -1.61
RNU4-53P-201ENST00000410828 UNC13AQ9UPW8 1703 aa5.01□□□□□ -1.61
RNU4-53P-201ENST00000410828 EIF4G1Q04637 1599 aaKnown RBP4.97□□□□□ -1.61
RNU4-53P-201ENST00000410828 DCAF1Q9Y4B6 1507 aa4.94□□□□□ -1.62
RNU4-53P-201ENST00000410828 ZCCHC6Q5VYS8 1495 aaKnown RBP4.94□□□□□ -1.62
RNU4-53P-201ENST00000410828 SCRIBQ14160 1630 aa4.94□□□□□ -1.62
RNU4-53P-201ENST00000410828 CUX2O14529 1486 aa4.88□□□□□ -1.63
RNU4-53P-201ENST00000410828 ERCC6Q03468 1493 aa4.86□□□□□ -1.63
RNU4-53P-201ENST00000410828 NCAPD3P42695 1498 aa4.81□□□□□ -1.64
RNU4-53P-201ENST00000410828 TRIM41Q8WV44 630 aa4.81□□□□□ -1.64
RNU4-53P-201ENST00000410828 ATAD2BQ9ULI0 1458 aa4.77□□□□□ -1.65
RNU4-53P-201ENST00000410828 NESP48681 1621 aa4.75□□□□□ -1.65
RNU4-53P-201ENST00000410828 SMARCA2P51531 1590 aa4.73□□□□□ -1.65
RNU4-53P-201ENST00000410828 PDS5BQ9NTI5 1447 aa4.72□□□□□ -1.65
RNU4-53P-201ENST00000410828 HMGXB3Q12766 1538 aa4.72□□□□□ -1.65
RNU4-53P-201ENST00000410828 BAZ1BQ9UIG0 1483 aaKnown RBP4.71□□□□□ -1.66
RNU4-53P-201ENST00000410828 OSCARQ8IYS5 282 aa4.7□□□□□ -1.66
RNU4-53P-201ENST00000410828 THOC2Q8NI27 1593 aaKnown RBP4.69□□□□□ -1.66
RNU4-53P-201ENST00000410828 LAMC3Q9Y6N6 1575 aa4.69□□□□□ -1.66
RNU4-53P-201ENST00000410828 CADPSQ9ULU8 1353 aa4.68□□□□□ -1.66
RNU4-53P-201ENST00000410828 SMARCA4P51532 1647 aa4.68□□□□□ -1.66
RNU4-53P-201ENST00000410828 BAZ1AQ9NRL2 1556 aaPredicted RBP4.67□□□□□ -1.66
RNU4-53P-201ENST00000410828 MRC2Q9UBG0 1479 aa4.66□□□□□ -1.66
RNU4-53P-201ENST00000410828 PEG3Q9GZU2 1588 aa4.64□□□□□ -1.67
RNU4-53P-201ENST00000410828 WDR62O43379 1518 aa4.62□□□□□ -1.67
RNU4-53P-201ENST00000410828 MROH2BQ7Z745 1585 aa4.61□□□□□ -1.67
RNU4-53P-201ENST00000410828 CEP164Q9UPV0 1460 aa4.61□□□□□ -1.67
RNU4-53P-201ENST00000410828 KIF21AQ7Z4S6 1674 aa4.61□□□□□ -1.67
RNU4-53P-201ENST00000410828 FANCD2Q9BXW9 1451 aa4.6□□□□□ -1.67
RNU4-53P-201ENST00000410828 TRHP20396 242 aaPredicted RBP4.59□□□□□ -1.67
RNU4-53P-201ENST00000410828 CYB5RLQ6IPT4 315 aa4.59□□□□□ -1.67
RNU4-53P-201ENST00000410828 CFTRP13569 1480 aa4.57□□□□□ -1.68
RNU4-53P-201ENST00000410828 AEBP2Q6ZN18 517 aaPredicted RBP4.57□□□□□ -1.68
RNU4-53P-201ENST00000410828 ARHGEF11O15085 1522 aa4.56□□□□□ -1.68
RNU4-53P-201ENST00000410828 URB2Q14146 1524 aaKnown RBP4.55□□□□□ -1.68
RNU4-53P-201ENST00000410828 RIMBP3CA6NJZ7 1639 aa4.54□□□□□ -1.68
RNU4-53P-201ENST00000410828 RIMBP3BA6NNM3 1639 aa4.54□□□□□ -1.68
RNU4-53P-201ENST00000410828 RIMBP3Q9UFD9 1639 aa4.54□□□□□ -1.68
RNU4-53P-201ENST00000410828 FBLN2P98095 1184 aa4.54□□□□□ -1.68
RNU4-53P-201ENST00000410828 IFT140Q96RY7 1462 aa4.54□□□□□ -1.68
RNU4-53P-201ENST00000410828 ZNF608Q9ULD9 1512 aaPredicted RBP4.52□□□□□ -1.69
RNU4-53P-201ENST00000410828 WIZO95785 1651 aa4.51□□□□□ -1.69
RNU4-53P-201ENST00000410828 RSF1Q96T23 1441 aaPredicted RBP4.5□□□□□ -1.69
RNU4-53P-201ENST00000410828 ARAP1Q96P48 1450 aa4.49□□□□□ -1.69
RNU4-53P-201ENST00000410828 ABCC8Q09428 1581 aa4.49□□□□□ -1.69
RNU4-53P-201ENST00000410828 AQRO60306 1485 aaKnown RBP eCLIP4.49□□□□□ -1.69
RNU4-53P-201ENST00000410828 TOPBP1Q92547 1522 aa4.48□□□□□ -1.69
RNU4-53P-201ENST00000410828 CHMP7Q8WUX9 453 aaPredicted RBP4.48□□□□□ -1.69
RNU4-53P-201ENST00000410828 TOP2AP11388 1531 aaKnown RBP4.47□□□□□ -1.69
RNU4-53P-201ENST00000410828 TDRD9Q8NDG6 1382 aaKnown RBP4.46□□□□□ -1.7
RNU4-53P-201ENST00000410828 CCDC88BA6NC98 1476 aa4.45□□□□□ -1.7
RNU4-53P-201ENST00000410828 EIF4G3O43432 1585 aaKnown RBP4.44□□□□□ -1.7
RNU4-53P-201ENST00000410828 SOGA1O94964 1423 aa4.44□□□□□ -1.7
RNU4-53P-201ENST00000410828 DNMBPQ6XZF7 1577 aa4.44□□□□□ -1.7
RNU4-53P-201ENST00000410828 POLA1P09884 1462 aaPredicted RBP4.43□□□□□ -1.7
RNU4-53P-201ENST00000410828 RAD54L2Q9Y4B4 1467 aa4.43□□□□□ -1.7
RNU4-53P-201ENST00000410828 SNAPC4Q5SXM2 1469 aa4.42□□□□□ -1.7
RNU4-53P-201ENST00000410828 TARBP1Q13395 1621 aaKnown RBP4.41□□□□□ -1.7
RNU4-53P-201ENST00000410828 GRIN2BQ13224 1484 aa4.41□□□□□ -1.7
RNU4-53P-201ENST00000410828 GAPVD1Q14C86 1478 aa4.41□□□□□ -1.7
RNU4-53P-201ENST00000410828 MAGI1Q96QZ7 1491 aaPredicted RBP4.41□□□□□ -1.7
RNU4-53P-201ENST00000410828 CLASP1Q7Z460 1538 aa4.41□□□□□ -1.7
RNU4-53P-201ENST00000410828 CHD1O14646 1710 aa4.41□□□□□ -1.7
RNU4-53P-201ENST00000410828 SYNJ1O43426 1573 aa4.4□□□□□ -1.7
RNU4-53P-201ENST00000410828 SYNJ2O15056 1496 aa4.4□□□□□ -1.71
RNU4-53P-201ENST00000410828 FGD5Q6ZNL6 1462 aa4.38□□□□□ -1.71
RNU4-53P-201ENST00000410828 PRDM2Q13029 1718 aa4.38□□□□□ -1.71
RNU4-53P-201ENST00000410828 WDR97A6NE52 1622 aa4.37□□□□□ -1.71
RNU4-53P-201ENST00000410828 NPM1P06748 294 aaKnown RBP eCLIP4.36□□□□□ -1.71
RNU4-53P-201ENST00000410828 FAM69CQ0P6D2 419 aa4.36□□□□□ -1.71
RNU4-53P-201ENST00000410828 ILDR1Q86SU0 546 aaPredicted RBP4.36□□□□□ -1.71
RNU4-53P-201ENST00000410828 KDM4FA0A1W2PPD8 638 aa4.34□□□□□ -1.71
RNU4-53P-201ENST00000410828 JPH4Q96JJ6 628 aa4.34□□□□□ -1.71
RNU4-53P-201ENST00000410828 CUX1P39880 1505 aa4.34□□□□□ -1.71
RNU4-53P-201ENST00000410828 ABCA10Q8WWZ4 1543 aa4.33□□□□□ -1.72
RNU4-53P-201ENST00000410828 GRIN2AQ12879 1464 aa4.33□□□□□ -1.72
RNU4-53P-201ENST00000410828 NUP160Q12769 1436 aa4.33□□□□□ -1.72
RNU4-53P-201ENST00000410828 FHAD1B1AJZ9 1412 aa4.32□□□□□ -1.72
RNU4-53P-201ENST00000410828 PRG4Q92954 1404 aaPredicted RBP4.32□□□□□ -1.72
RNU4-53P-201ENST00000410828 CEP170Q5SW79 1584 aa4.31□□□□□ -1.72
RNU4-53P-201ENST00000410828 ERCC6L2Q5T890 1561 aa4.31□□□□□ -1.72
RNU4-53P-201ENST00000410828 ABCC10Q5T3U5 1492 aa4.31□□□□□ -1.72
RNU4-53P-201ENST00000410828 WRNQ14191 1432 aaPredicted RBP eCLIP4.31□□□□□ -1.72
RNU4-53P-201ENST00000410828 ABCA5Q8WWZ7 1642 aa4.28□□□□□ -1.72
RNU4-53P-201ENST00000410828 MAPKBP1O60336 1514 aa4.28□□□□□ -1.72
RNU4-53P-201ENST00000410828 ADAMTS12P58397 1594 aa4.27□□□□□ -1.73
RNU4-53P-201ENST00000410828 PBRM1Q86U86 1689 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms