RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.86
SKA3-203ENST00000400018 CCDC180Q9P1Z9 1646 aa23.01■■□□□ 1.27
SKA3-203ENST00000400018 DCAF8L2P0C7V8 631 aa22.76■■□□□ 1.23
SKA3-203ENST00000400018 ABCC9O60706 1549 aa22.58■■□□□ 1.21
SKA3-203ENST00000400018 ZCCHC6Q5VYS8 1495 aaKnown RBP22.29■■□□□ 1.16
SKA3-203ENST00000400018 SHROOM4Q9ULL8 1493 aa22.27■■□□□ 1.16
SKA3-203ENST00000400018 DCAF1Q9Y4B6 1507 aa21.68■■□□□ 1.06
SKA3-203ENST00000400018 SCRIBQ14160 1630 aa21.66■■□□□ 1.06
SKA3-203ENST00000400018 NACADO15069 1562 aa21.56■■□□□ 1.04
SKA3-203ENST00000400018 RB1CC1Q8TDY2 1594 aa21.5■■□□□ 1.03
SKA3-203ENST00000400018 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
SKA3-203ENST00000400018 MYO15BQ96JP2 1530 aa21.41■■□□□ 1.02
SKA3-203ENST00000400018 SUPT5HO00267 1087 aaKnown RBP21.29■■□□□ 1
SKA3-203ENST00000400018 UNC13AQ9UPW8 1703 aa21.23■□□□□ 0.99
SKA3-203ENST00000400018 BICRAQ9NZM4 1560 aa21.03■□□□□ 0.96
SKA3-203ENST00000400018 CECR2Q9BXF3 1484 aa21.01■□□□□ 0.95
SKA3-203ENST00000400018 MROH2BQ7Z745 1585 aa20.76■□□□□ 0.91
SKA3-203ENST00000400018 RSF1Q96T23 1441 aaPredicted RBP20.72■□□□□ 0.91
SKA3-203ENST00000400018 WIZO95785 1651 aa20.6■□□□□ 0.89
SKA3-203ENST00000400018 SMARCA4P51532 1647 aa20.51■□□□□ 0.87
SKA3-203ENST00000400018 BAZ1AQ9NRL2 1556 aaPredicted RBP20.5■□□□□ 0.87
SKA3-203ENST00000400018 EIF4G1Q04637 1599 aaKnown RBP20.4■□□□□ 0.86
SKA3-203ENST00000400018 DNAJC5BQ9UF47 199 aa20.34■□□□□ 0.85
SKA3-203ENST00000400018 ATAD2BQ9ULI0 1458 aa20.28■□□□□ 0.84
SKA3-203ENST00000400018 CC2D2AQ9P2K1 1620 aa20.21■□□□□ 0.83
SKA3-203ENST00000400018 BAZ1BQ9UIG0 1483 aaKnown RBP20.17■□□□□ 0.82
SKA3-203ENST00000400018 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
SKA3-203ENST00000400018 CCDC88BA6NC98 1476 aa20.12■□□□□ 0.81
SKA3-203ENST00000400018 SMARCA2P51531 1590 aa20.08■□□□□ 0.8
SKA3-203ENST00000400018 PEG3Q9GZU2 1588 aa20.05■□□□□ 0.8
SKA3-203ENST00000400018 CHIC1Q5VXU3 224 aa20.03■□□□□ 0.8
SKA3-203ENST00000400018 NCAPD3P42695 1498 aa20■□□□□ 0.79
SKA3-203ENST00000400018 HMGXB3Q12766 1538 aa19.86■□□□□ 0.77
SKA3-203ENST00000400018 ABCC8Q09428 1581 aa19.81■□□□□ 0.76
SKA3-203ENST00000400018 EHMT2Q96KQ7 1210 aa19.81■□□□□ 0.76
SKA3-203ENST00000400018 NESP48681 1621 aa19.79■□□□□ 0.76
SKA3-203ENST00000400018 FAM9AQ8IZU1 332 aaPredicted RBP19.78■□□□□ 0.76
SKA3-203ENST00000400018 TRIM41Q8WV44 630 aa19.77■□□□□ 0.76
SKA3-203ENST00000400018 CADPSQ9ULU8 1353 aa19.61■□□□□ 0.73
SKA3-203ENST00000400018 CFTRP13569 1480 aa19.57■□□□□ 0.72
SKA3-203ENST00000400018 LOC105371045A0A1W2PR82 267 aa19.56■□□□□ 0.72
SKA3-203ENST00000400018 WRNQ14191 1432 aaPredicted RBP eCLIP19.48■□□□□ 0.71
SKA3-203ENST00000400018 SYNJ1O43426 1573 aa19.47■□□□□ 0.71
SKA3-203ENST00000400018 FANCD2Q9BXW9 1451 aa19.44■□□□□ 0.7
SKA3-203ENST00000400018 RUSC2Q8N2Y8 1516 aa19.42■□□□□ 0.7
SKA3-203ENST00000400018 SOGA1O94964 1423 aa19.4■□□□□ 0.7
SKA3-203ENST00000400018 CUX1P39880 1505 aa19.37■□□□□ 0.69
SKA3-203ENST00000400018 KIF21AQ7Z4S6 1674 aa19.34■□□□□ 0.69
SKA3-203ENST00000400018 LAMC3Q9Y6N6 1575 aa19.3■□□□□ 0.68
SKA3-203ENST00000400018 CEP164Q9UPV0 1460 aa19.27■□□□□ 0.68
SKA3-203ENST00000400018 PDS5BQ9NTI5 1447 aa19.26■□□□□ 0.67
SKA3-203ENST00000400018 ERCC6Q03468 1493 aa19.25■□□□□ 0.67
SKA3-203ENST00000400018 URB2Q14146 1524 aaKnown RBP19.25■□□□□ 0.67
SKA3-203ENST00000400018 PRDM2Q13029 1718 aa19.24■□□□□ 0.67
SKA3-203ENST00000400018 RAD54L2Q9Y4B4 1467 aa19.24■□□□□ 0.67
SKA3-203ENST00000400018 TOP2BQ02880 1626 aa19.21■□□□□ 0.67
SKA3-203ENST00000400018 FGD5Q6ZNL6 1462 aa19.2■□□□□ 0.66
SKA3-203ENST00000400018 RANGAP1P46060 587 aaPredicted RBP19.19■□□□□ 0.66
SKA3-203ENST00000400018 TOPBP1Q92547 1522 aa19.18■□□□□ 0.66
SKA3-203ENST00000400018 BIVM-ERCC5R4GMW8 1640 aa19.13■□□□□ 0.65
SKA3-203ENST00000400018 POLA1P09884 1462 aaPredicted RBP19.11■□□□□ 0.65
SKA3-203ENST00000400018 TDRD9Q8NDG6 1382 aaKnown RBP19.11■□□□□ 0.65
SKA3-203ENST00000400018 CSRNP3Q8WYN3 585 aa19.1■□□□□ 0.65
SKA3-203ENST00000400018 CUX2O14529 1486 aa19.09■□□□□ 0.65
SKA3-203ENST00000400018 DNMBPQ6XZF7 1577 aa19.07■□□□□ 0.64
SKA3-203ENST00000400018 MRC2Q9UBG0 1479 aa19.04■□□□□ 0.64
SKA3-203ENST00000400018 UBTFP17480 764 aaKnown RBP19.03■□□□□ 0.64
SKA3-203ENST00000400018 AQRO60306 1485 aaKnown RBP eCLIP18.98■□□□□ 0.633e-7■■■■■ 51.3
SKA3-203ENST00000400018 ZNF608Q9ULD9 1512 aaPredicted RBP18.97■□□□□ 0.63
SKA3-203ENST00000400018 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
SKA3-203ENST00000400018 RAPGEF2Q9Y4G8 1499 aa18.94■□□□□ 0.62
SKA3-203ENST00000400018 KIF27Q86VH2 1401 aa18.94■□□□□ 0.62
SKA3-203ENST00000400018 IGF1RP08069 1367 aa18.91■□□□□ 0.62
SKA3-203ENST00000400018 PPARGC1BQ86YN6 1023 aaKnown RBP18.89■□□□□ 0.62
SKA3-203ENST00000400018 WDR62O43379 1518 aa18.89■□□□□ 0.61
SKA3-203ENST00000400018 ABCA10Q8WWZ4 1543 aa18.85■□□□□ 0.61
SKA3-203ENST00000400018 TARBP1Q13395 1621 aaKnown RBP18.84■□□□□ 0.61
SKA3-203ENST00000400018 FBLN2P98095 1184 aa18.84■□□□□ 0.61
SKA3-203ENST00000400018 TTBK1Q5TCY1 1321 aaPredicted RBP18.82■□□□□ 0.6
SKA3-203ENST00000400018 GAPVD1Q14C86 1478 aa18.81■□□□□ 0.6
SKA3-203ENST00000400018 CARMIL1Q5VZK9 1371 aa18.8■□□□□ 0.6
SKA3-203ENST00000400018 EEA1Q15075 1411 aa18.8■□□□□ 0.6
SKA3-203ENST00000400018 P3H3Q8IVL6 736 aa18.77■□□□□ 0.59
SKA3-203ENST00000400018 WDR97A6NE52 1622 aa18.76■□□□□ 0.59
SKA3-203ENST00000400018 GOLGA3Q08378 1498 aa18.75■□□□□ 0.59
SKA3-203ENST00000400018 PRXQ9BXM0 1461 aa18.75■□□□□ 0.59
SKA3-203ENST00000400018 IFT140Q96RY7 1462 aa18.73■□□□□ 0.59
SKA3-203ENST00000400018 ABCA5Q8WWZ7 1642 aa18.71■□□□□ 0.59
SKA3-203ENST00000400018 CEP162Q5TB80 1403 aa18.7■□□□□ 0.58
SKA3-203ENST00000400018 EIF4G3O43432 1585 aaKnown RBP18.7■□□□□ 0.58
SKA3-203ENST00000400018 KIF21BO75037 1637 aa18.67■□□□□ 0.58
SKA3-203ENST00000400018 SNAPC4Q5SXM2 1469 aa18.66■□□□□ 0.58
SKA3-203ENST00000400018 TNIKQ9UKE5 1360 aa18.66■□□□□ 0.58
SKA3-203ENST00000400018 PBRM1Q86U86 1689 aa18.63■□□□□ 0.57
SKA3-203ENST00000400018 CHMP7Q8WUX9 453 aaPredicted RBP18.62■□□□□ 0.57
SKA3-203ENST00000400018 GRIN2BQ13224 1484 aa18.6■□□□□ 0.57
SKA3-203ENST00000400018 CLIP1P30622 1438 aa18.58■□□□□ 0.56
SKA3-203ENST00000400018 ERICH3Q5RHP9 1530 aa18.56■□□□□ 0.56
SKA3-203ENST00000400018 ATP1B4Q9UN42 357 aaPredicted RBP18.53■□□□□ 0.56
SKA3-203ENST00000400018 ARID3CA6NKF2 412 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms