RNA–Protein interactions for RNA: ENST00000399082.7

HLA-DQB1-203, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-203ENST00000399082 NISCHQ9Y2I1 1504 aa29.89■■■□□ 2.38
HLA-DQB1-203ENST00000399082 AEBP2Q6ZN18 517 aaPredicted RBP26.7■■□□□ 1.86
HLA-DQB1-203ENST00000399082 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
HLA-DQB1-203ENST00000399082 ABCC9O60706 1549 aa25.58■■□□□ 1.68
HLA-DQB1-203ENST00000399082 ZCCHC6Q5VYS8 1495 aaKnown RBP24.98■■□□□ 1.59
HLA-DQB1-203ENST00000399082 CHIC1Q5VXU3 224 aa24.97■■□□□ 1.59
HLA-DQB1-203ENST00000399082 NACADO15069 1562 aa24.76■■□□□ 1.55
HLA-DQB1-203ENST00000399082 DCAF1Q9Y4B6 1507 aa24.74■■□□□ 1.55
HLA-DQB1-203ENST00000399082 MYO15BQ96JP2 1530 aa24.72■■□□□ 1.55
HLA-DQB1-203ENST00000399082 DCAF8L2P0C7V8 631 aa24.7■■□□□ 1.54
HLA-DQB1-203ENST00000399082 RB1CC1Q8TDY2 1594 aa24.7■■□□□ 1.54
HLA-DQB1-203ENST00000399082 UNC13AQ9UPW8 1703 aa24.25■■□□□ 1.47
HLA-DQB1-203ENST00000399082 SCRIBQ14160 1630 aa24.16■■□□□ 1.46
HLA-DQB1-203ENST00000399082 BICRAQ9NZM4 1560 aa24.05■■□□□ 1.44
HLA-DQB1-203ENST00000399082 PABPN1Q86U42 306 aaKnown RBP eCLIP23.92■■□□□ 1.42
HLA-DQB1-203ENST00000399082 SHROOM4Q9ULL8 1493 aa23.75■■□□□ 1.39
HLA-DQB1-203ENST00000399082 EIF4G1Q04637 1599 aaKnown RBP23.34■■□□□ 1.33
HLA-DQB1-203ENST00000399082 CECR2Q9BXF3 1484 aa23.29■■□□□ 1.32
HLA-DQB1-203ENST00000399082 DNAJC5BQ9UF47 199 aa23.25■■□□□ 1.31
HLA-DQB1-203ENST00000399082 CC2D2AQ9P2K1 1620 aa23.16■■□□□ 1.3
HLA-DQB1-203ENST00000399082 SMARCA4P51532 1647 aa23.14■■□□□ 1.29
HLA-DQB1-203ENST00000399082 BAZ1AQ9NRL2 1556 aaPredicted RBP23.12■■□□□ 1.29
HLA-DQB1-203ENST00000399082 MROH2BQ7Z745 1585 aa23.07■■□□□ 1.28
HLA-DQB1-203ENST00000399082 ATAD2BQ9ULI0 1458 aa22.92■■□□□ 1.26
HLA-DQB1-203ENST00000399082 PEG3Q9GZU2 1588 aa22.92■■□□□ 1.26
HLA-DQB1-203ENST00000399082 RSF1Q96T23 1441 aaPredicted RBP22.89■■□□□ 1.25
HLA-DQB1-203ENST00000399082 SMARCA2P51531 1590 aa22.87■■□□□ 1.25
HLA-DQB1-203ENST00000399082 NCAPD3P42695 1498 aa22.85■■□□□ 1.25
HLA-DQB1-203ENST00000399082 WIZO95785 1651 aa22.84■■□□□ 1.25
HLA-DQB1-203ENST00000399082 HMGXB3Q12766 1538 aa22.78■■□□□ 1.24
HLA-DQB1-203ENST00000399082 BAZ1BQ9UIG0 1483 aaKnown RBP22.72■■□□□ 1.23
HLA-DQB1-203ENST00000399082 SENP3Q9H4L4 574 aaPredicted RBP22.71■■□□□ 1.23
HLA-DQB1-203ENST00000399082 TOP2AP11388 1531 aaKnown RBP22.58■■□□□ 1.21
HLA-DQB1-203ENST00000399082 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
HLA-DQB1-203ENST00000399082 PHF23Q9BUL5 403 aaPredicted RBP22.41■■□□□ 1.18
HLA-DQB1-203ENST00000399082 CCDC88BA6NC98 1476 aa22.31■■□□□ 1.16
HLA-DQB1-203ENST00000399082 NESP48681 1621 aa22.26■■□□□ 1.15
HLA-DQB1-203ENST00000399082 LAMC3Q9Y6N6 1575 aa22.19■■□□□ 1.14
HLA-DQB1-203ENST00000399082 CADPSQ9ULU8 1353 aa22.18■■□□□ 1.14
HLA-DQB1-203ENST00000399082 CFTRP13569 1480 aa22.15■■□□□ 1.14
HLA-DQB1-203ENST00000399082 PRDM2Q13029 1718 aa22.01■■□□□ 1.11
HLA-DQB1-203ENST00000399082 KIF21AQ7Z4S6 1674 aa22■■□□□ 1.11
HLA-DQB1-203ENST00000399082 PDS5BQ9NTI5 1447 aa21.98■■□□□ 1.11
HLA-DQB1-203ENST00000399082 ERCC6Q03468 1493 aa21.95■■□□□ 1.1
HLA-DQB1-203ENST00000399082 FANCD2Q9BXW9 1451 aa21.94■■□□□ 1.1
HLA-DQB1-203ENST00000399082 THOC2Q8NI27 1593 aaKnown RBP21.87■■□□□ 1.09
HLA-DQB1-203ENST00000399082 CEP164Q9UPV0 1460 aa21.87■■□□□ 1.09
HLA-DQB1-203ENST00000399082 MRC2Q9UBG0 1479 aa21.79■■□□□ 1.08
HLA-DQB1-203ENST00000399082 URB2Q14146 1524 aaKnown RBP21.75■■□□□ 1.07
HLA-DQB1-203ENST00000399082 WDR62O43379 1518 aa21.74■■□□□ 1.07
HLA-DQB1-203ENST00000399082 TOPBP1Q92547 1522 aa21.65■■□□□ 1.06
HLA-DQB1-203ENST00000399082 CUX2O14529 1486 aa21.64■■□□□ 1.06
HLA-DQB1-203ENST00000399082 DNMBPQ6XZF7 1577 aa21.64■■□□□ 1.05
HLA-DQB1-203ENST00000399082 CUX1P39880 1505 aa21.62■■□□□ 1.05
HLA-DQB1-203ENST00000399082 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
HLA-DQB1-203ENST00000399082 SYNJ1O43426 1573 aa21.54■■□□□ 1.04
HLA-DQB1-203ENST00000399082 WRNQ14191 1432 aaPredicted RBP eCLIP21.53■■□□□ 1.04
HLA-DQB1-203ENST00000399082 BIVM-ERCC5R4GMW8 1640 aa21.5■■□□□ 1.03
HLA-DQB1-203ENST00000399082 TOP2BQ02880 1626 aa21.49■■□□□ 1.03
HLA-DQB1-203ENST00000399082 POLA1P09884 1462 aaPredicted RBP21.49■■□□□ 1.03
HLA-DQB1-203ENST00000399082 FGD5Q6ZNL6 1462 aa21.47■■□□□ 1.03
HLA-DQB1-203ENST00000399082 TARBP1Q13395 1621 aaKnown RBP21.42■■□□□ 1.02
HLA-DQB1-203ENST00000399082 IFT140Q96RY7 1462 aa21.39■■□□□ 1.02
HLA-DQB1-203ENST00000399082 RAD54L2Q9Y4B4 1467 aa21.39■■□□□ 1.02
HLA-DQB1-203ENST00000399082 SOGA1O94964 1423 aa21.35■■□□□ 1.01
HLA-DQB1-203ENST00000399082 ZNF608Q9ULD9 1512 aaPredicted RBP21.34■■□□□ 1.01
HLA-DQB1-203ENST00000399082 WDR97A6NE52 1622 aa21.33■■□□□ 1.01
HLA-DQB1-203ENST00000399082 FOXD1Q16676 465 aa21.28■■□□□ 1
HLA-DQB1-203ENST00000399082 ABCA10Q8WWZ4 1543 aa21.28■■□□□ 1
HLA-DQB1-203ENST00000399082 EIF4G3O43432 1585 aaKnown RBP21.27■□□□□ 0.99
HLA-DQB1-203ENST00000399082 TDRD9Q8NDG6 1382 aaKnown RBP21.22■□□□□ 0.99
HLA-DQB1-203ENST00000399082 AQRO60306 1485 aaKnown RBP eCLIP21.21■□□□□ 0.99
HLA-DQB1-203ENST00000399082 ABCA5Q8WWZ7 1642 aa21.2■□□□□ 0.98
HLA-DQB1-203ENST00000399082 TRIM41Q8WV44 630 aa21.14■□□□□ 0.97
HLA-DQB1-203ENST00000399082 GAPVD1Q14C86 1478 aa21.13■□□□□ 0.97
HLA-DQB1-203ENST00000399082 PBRM1Q86U86 1689 aa21.11■□□□□ 0.97
HLA-DQB1-203ENST00000399082 GRIN2BQ13224 1484 aa21.07■□□□□ 0.96
HLA-DQB1-203ENST00000399082 SNAPC4Q5SXM2 1469 aa21.04■□□□□ 0.96
HLA-DQB1-203ENST00000399082 RUSC2Q8N2Y8 1516 aa21.04■□□□□ 0.96
HLA-DQB1-203ENST00000399082 KIF27Q86VH2 1401 aa21.03■□□□□ 0.96
HLA-DQB1-203ENST00000399082 ERICH3Q5RHP9 1530 aa21.01■□□□□ 0.95
HLA-DQB1-203ENST00000399082 MAGI1Q96QZ7 1491 aaPredicted RBP20.99■□□□□ 0.95
HLA-DQB1-203ENST00000399082 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
HLA-DQB1-203ENST00000399082 IGF1RP08069 1367 aa20.95■□□□□ 0.94
HLA-DQB1-203ENST00000399082 CHD1O14646 1710 aa20.94■□□□□ 0.94
HLA-DQB1-203ENST00000399082 SYNJ2O15056 1496 aa20.91■□□□□ 0.94
HLA-DQB1-203ENST00000399082 FHAD1B1AJZ9 1412 aa20.88■□□□□ 0.93
HLA-DQB1-203ENST00000399082 CUL7Q14999 1698 aa20.87■□□□□ 0.93
HLA-DQB1-203ENST00000399082 GRIN2AQ12879 1464 aa20.83■□□□□ 0.93
HLA-DQB1-203ENST00000399082 EEA1Q15075 1411 aa20.82■□□□□ 0.92
HLA-DQB1-203ENST00000399082 FBLN2P98095 1184 aa20.8■□□□□ 0.92
HLA-DQB1-203ENST00000399082 CHMP7Q8WUX9 453 aaPredicted RBP20.8■□□□□ 0.92
HLA-DQB1-203ENST00000399082 CARMIL1Q5VZK9 1371 aa20.8■□□□□ 0.92
HLA-DQB1-203ENST00000399082 PRXQ9BXM0 1461 aa20.77■□□□□ 0.92
HLA-DQB1-203ENST00000399082 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
HLA-DQB1-203ENST00000399082 NUP160Q12769 1436 aa20.75■□□□□ 0.91
HLA-DQB1-203ENST00000399082 OSCARQ8IYS5 282 aa20.74■□□□□ 0.91
HLA-DQB1-203ENST00000399082 FAM9AQ8IZU1 332 aaPredicted RBP20.74■□□□□ 0.91
HLA-DQB1-203ENST00000399082 CSRNP3Q8WYN3 585 aa20.74■□□□□ 0.91
HLA-DQB1-203ENST00000399082 CLASP1Q7Z460 1538 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms