RNA–Protein interactions for RNA: ENST00000380691.2

MSL3-204, Transcript of MSL complex subunit 3, humanhuman

TSL 3

Gene MSL3, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-204ENST00000380691 AEBP2Q6ZN18 517 aaPredicted RBP16.64■□□□□ 0.25
MSL3-204ENST00000380691 CHIC1Q5VXU3 224 aa15.95■□□□□ 0.14
MSL3-204ENST00000380691 NISCHQ9Y2I1 1504 aa15.09■□□□□ 0.01
MSL3-204ENST00000380691 ABCC9O60706 1549 aa14.32□□□□□ -0.12
MSL3-204ENST00000380691 SENP3Q9H4L4 574 aaPredicted RBP14.27□□□□□ -0.13
MSL3-204ENST00000380691 PHF23Q9BUL5 403 aaPredicted RBP14.04□□□□□ -0.16
MSL3-204ENST00000380691 DNAJC5BQ9UF47 199 aa13.9□□□□□ -0.18
MSL3-204ENST00000380691 CCDC180Q9P1Z9 1646 aa13.75□□□□□ -0.21
MSL3-204ENST00000380691 POTEDQ86YR6 584 aa13.43□□□□□ -0.26
MSL3-204ENST00000380691 RB1CC1Q8TDY2 1594 aa13.39□□□□□ -0.27
MSL3-204ENST00000380691 FOXD1Q16676 465 aa13.32□□□□□ -0.28
MSL3-204ENST00000380691 PABPN1Q86U42 306 aaKnown RBP eCLIP13.24□□□□□ -0.29
MSL3-204ENST00000380691 DNAJC5Q9H3Z4 198 aa13.23□□□□□ -0.29
MSL3-204ENST00000380691 NACADO15069 1562 aa13.18□□□□□ -0.3
MSL3-204ENST00000380691 CECR2Q9BXF3 1484 aa12.99□□□□□ -0.33
MSL3-204ENST00000380691 BICRAQ9NZM4 1560 aa12.98□□□□□ -0.33
MSL3-204ENST00000380691 DCAF8L2P0C7V8 631 aa12.92□□□□□ -0.34
MSL3-204ENST00000380691 SHROOM4Q9ULL8 1493 aa12.9□□□□□ -0.34
MSL3-204ENST00000380691 UNC13AQ9UPW8 1703 aa12.88□□□□□ -0.35
MSL3-204ENST00000380691 PLPPR3Q6T4P5 718 aa12.87□□□□□ -0.35
MSL3-204ENST00000380691 CC2D2AQ9P2K1 1620 aa12.87□□□□□ -0.35
MSL3-204ENST00000380691 MYO15BQ96JP2 1530 aa12.87□□□□□ -0.35
MSL3-204ENST00000380691 EIF4G1Q04637 1599 aaKnown RBP12.74□□□□□ -0.37
MSL3-204ENST00000380691 MSH5O43196 834 aa12.71□□□□□ -0.37
MSL3-204ENST00000380691 CUX2O14529 1486 aa12.64□□□□□ -0.39
MSL3-204ENST00000380691 SCRIBQ14160 1630 aa12.5□□□□□ -0.41
MSL3-204ENST00000380691 DCAF1Q9Y4B6 1507 aa12.47□□□□□ -0.41
MSL3-204ENST00000380691 ADRA2BP18089 450 aa12.44□□□□□ -0.42
MSL3-204ENST00000380691 ERCC6Q03468 1493 aa12.44□□□□□ -0.42
MSL3-204ENST00000380691 PIAS4Q8N2W9 510 aaPredicted RBP12.42□□□□□ -0.42
MSL3-204ENST00000380691 PPP6R1Q9UPN7 881 aa12.42□□□□□ -0.42
MSL3-204ENST00000380691 ZCCHC6Q5VYS8 1495 aaKnown RBP12.41□□□□□ -0.42
MSL3-204ENST00000380691 TRIM41Q8WV44 630 aa12.39□□□□□ -0.43
MSL3-204ENST00000380691 NCAPD3P42695 1498 aa12.21□□□□□ -0.46
MSL3-204ENST00000380691 NESP48681 1621 aa12.12□□□□□ -0.47
MSL3-204ENST00000380691 THOC2Q8NI27 1593 aaKnown RBP12.12□□□□□ -0.47
MSL3-204ENST00000380691 ATAD2BQ9ULI0 1458 aa12.07□□□□□ -0.48
MSL3-204ENST00000380691 HMGXB3Q12766 1538 aa12.06□□□□□ -0.48
MSL3-204ENST00000380691 SMARCA2P51531 1590 aa12.01□□□□□ -0.49
MSL3-204ENST00000380691 LAMC3Q9Y6N6 1575 aa11.97□□□□□ -0.49
MSL3-204ENST00000380691 PDS5BQ9NTI5 1447 aa11.97□□□□□ -0.49
MSL3-204ENST00000380691 OSCARQ8IYS5 282 aa11.93□□□□□ -0.5
MSL3-204ENST00000380691 BAZ1BQ9UIG0 1483 aaKnown RBP11.92□□□□□ -0.5
MSL3-204ENST00000380691 BAZ1AQ9NRL2 1556 aaPredicted RBP11.9□□□□□ -0.5
MSL3-204ENST00000380691 MRC2Q9UBG0 1479 aa11.89□□□□□ -0.51
MSL3-204ENST00000380691 WDR62O43379 1518 aa11.87□□□□□ -0.51
MSL3-204ENST00000380691 SMARCA4P51532 1647 aa11.86□□□□□ -0.51
MSL3-204ENST00000380691 KIF21AQ7Z4S6 1674 aa11.85□□□□□ -0.51
MSL3-204ENST00000380691 CADPSQ9ULU8 1353 aa11.8□□□□□ -0.52
MSL3-204ENST00000380691 PEG3Q9GZU2 1588 aa11.79□□□□□ -0.52
MSL3-204ENST00000380691 RIMBP3CA6NJZ7 1639 aa11.77□□□□□ -0.53
MSL3-204ENST00000380691 RIMBP3BA6NNM3 1639 aa11.77□□□□□ -0.53
MSL3-204ENST00000380691 RIMBP3Q9UFD9 1639 aa11.77□□□□□ -0.53
MSL3-204ENST00000380691 ARHGEF11O15085 1522 aa11.74□□□□□ -0.53
MSL3-204ENST00000380691 CEP164Q9UPV0 1460 aa11.72□□□□□ -0.53
MSL3-204ENST00000380691 TRHP20396 242 aaPredicted RBP11.72□□□□□ -0.53
MSL3-204ENST00000380691 CYB5RLQ6IPT4 315 aa11.66□□□□□ -0.54
MSL3-204ENST00000380691 FANCD2Q9BXW9 1451 aa11.65□□□□□ -0.54
MSL3-204ENST00000380691 MROH2BQ7Z745 1585 aa11.6□□□□□ -0.55
MSL3-204ENST00000380691 ARAP1Q96P48 1450 aa11.59□□□□□ -0.55
MSL3-204ENST00000380691 URB2Q14146 1524 aaKnown RBP11.57□□□□□ -0.56
MSL3-204ENST00000380691 CFTRP13569 1480 aa11.55□□□□□ -0.56
MSL3-204ENST00000380691 RSF1Q96T23 1441 aaPredicted RBP11.54□□□□□ -0.56
MSL3-204ENST00000380691 IFT140Q96RY7 1462 aa11.53□□□□□ -0.56
MSL3-204ENST00000380691 ZNF608Q9ULD9 1512 aaPredicted RBP11.52□□□□□ -0.57
MSL3-204ENST00000380691 SCAF1Q9H7N4 1312 aaKnown RBP11.47□□□□□ -0.57
MSL3-204ENST00000380691 EIF4G3O43432 1585 aaKnown RBP11.41□□□□□ -0.58
MSL3-204ENST00000380691 ILDR1Q86SU0 546 aaPredicted RBP11.38□□□□□ -0.59
MSL3-204ENST00000380691 FBLN2P98095 1184 aa11.37□□□□□ -0.59
MSL3-204ENST00000380691 MAPK8IP2Q13387 824 aaPredicted RBP11.37□□□□□ -0.59
MSL3-204ENST00000380691 WIZO95785 1651 aa11.36□□□□□ -0.59
MSL3-204ENST00000380691 TOPBP1Q92547 1522 aa11.35□□□□□ -0.59
MSL3-204ENST00000380691 AQRO60306 1485 aaKnown RBP eCLIP11.34□□□□□ -0.591e-7■■■■□ 19.5
MSL3-204ENST00000380691 CHD1O14646 1710 aa11.33□□□□□ -0.6
MSL3-204ENST00000380691 ABCC8Q09428 1581 aa11.32□□□□□ -0.6
MSL3-204ENST00000380691 CLASP1Q7Z460 1538 aa11.31□□□□□ -0.6
MSL3-204ENST00000380691 CACNB1Q02641 598 aaPredicted RBP11.31□□□□□ -0.6
MSL3-204ENST00000380691 PPP4R3CPQ6ZMV5 832 aa11.29□□□□□ -0.6
MSL3-204ENST00000380691 TOP2AP11388 1531 aaKnown RBP11.28□□□□□ -0.6
MSL3-204ENST00000380691 DMRT2Q9Y5R5 561 aa11.27□□□□□ -0.61
MSL3-204ENST00000380691 SYNJ1O43426 1573 aa11.26□□□□□ -0.61
MSL3-204ENST00000380691 DNMBPQ6XZF7 1577 aa11.26□□□□□ -0.61
MSL3-204ENST00000380691 GAPVD1Q14C86 1478 aa11.25□□□□□ -0.61
MSL3-204ENST00000380691 TARBP1Q13395 1621 aaKnown RBP11.25□□□□□ -0.61
MSL3-204ENST00000380691 SNAPC4Q5SXM2 1469 aa11.24□□□□□ -0.61
MSL3-204ENST00000380691 CHMP7Q8WUX9 453 aaPredicted RBP11.23□□□□□ -0.61
MSL3-204ENST00000380691 POLA1P09884 1462 aaPredicted RBP11.21□□□□□ -0.61
MSL3-204ENST00000380691 MAGI1Q96QZ7 1491 aaPredicted RBP11.2□□□□□ -0.62
MSL3-204ENST00000380691 TDRD9Q8NDG6 1382 aaKnown RBP11.19□□□□□ -0.62
MSL3-204ENST00000380691 PRDM2Q13029 1718 aa11.19□□□□□ -0.62
MSL3-204ENST00000380691 SYNJ2O15056 1496 aa11.17□□□□□ -0.62
MSL3-204ENST00000380691 WDR97A6NE52 1622 aa11.17□□□□□ -0.62
MSL3-204ENST00000380691 RAD54L2Q9Y4B4 1467 aa11.15□□□□□ -0.62
MSL3-204ENST00000380691 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
MSL3-204ENST00000380691 KDM4FA0A1W2PPD8 638 aa11.14□□□□□ -0.63
MSL3-204ENST00000380691 SOGA1O94964 1423 aa11.14□□□□□ -0.63
MSL3-204ENST00000380691 CCDC88BA6NC98 1476 aa11.13□□□□□ -0.63
MSL3-204ENST00000380691 FGD5Q6ZNL6 1462 aa11.06□□□□□ -0.64
MSL3-204ENST00000380691 EHMT2Q96KQ7 1210 aa11.05□□□□□ -0.64
MSL3-204ENST00000380691 ERCC6L2Q5T890 1561 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 337.2 ms