RNA–Protein interactions for RNA: ENST00000377755.8

KRT40-201, Transcript of keratin 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KRT40, Length 1,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40-201ENST00000377755 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
KRT40-201ENST00000377755 CCDC180Q9P1Z9 1646 aa26.45■■□□□ 1.82
KRT40-201ENST00000377755 ABCC9O60706 1549 aa25.37■■□□□ 1.65
KRT40-201ENST00000377755 ZCCHC6Q5VYS8 1495 aaKnown RBP25.29■■□□□ 1.64
KRT40-201ENST00000377755 DCAF8L2P0C7V8 631 aa25.1■■□□□ 1.61
KRT40-201ENST00000377755 DCAF1Q9Y4B6 1507 aa24.95■■□□□ 1.58
KRT40-201ENST00000377755 MYO15BQ96JP2 1530 aa24.78■■□□□ 1.56
KRT40-201ENST00000377755 NACADO15069 1562 aa24.74■■□□□ 1.55
KRT40-201ENST00000377755 RB1CC1Q8TDY2 1594 aa24.6■■□□□ 1.53
KRT40-201ENST00000377755 SHROOM4Q9ULL8 1493 aa24.43■■□□□ 1.5
KRT40-201ENST00000377755 SCRIBQ14160 1630 aa24.31■■□□□ 1.48
KRT40-201ENST00000377755 UNC13AQ9UPW8 1703 aa24.09■■□□□ 1.45
KRT40-201ENST00000377755 BICRAQ9NZM4 1560 aa23.89■■□□□ 1.42
KRT40-201ENST00000377755 PABPN1Q86U42 306 aaKnown RBP eCLIP23.89■■□□□ 1.42
KRT40-201ENST00000377755 AEBP2Q6ZN18 517 aaPredicted RBP23.64■■□□□ 1.38
KRT40-201ENST00000377755 CECR2Q9BXF3 1484 aa23.52■■□□□ 1.36
KRT40-201ENST00000377755 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
KRT40-201ENST00000377755 MROH2BQ7Z745 1585 aa23.33■■□□□ 1.33
KRT40-201ENST00000377755 BAZ1AQ9NRL2 1556 aaPredicted RBP23.33■■□□□ 1.33
KRT40-201ENST00000377755 RSF1Q96T23 1441 aaPredicted RBP23.31■■□□□ 1.32
KRT40-201ENST00000377755 SMARCA4P51532 1647 aa23.27■■□□□ 1.32
KRT40-201ENST00000377755 EIF4G1Q04637 1599 aaKnown RBP23.19■■□□□ 1.3
KRT40-201ENST00000377755 WIZO95785 1651 aa23.12■■□□□ 1.29
KRT40-201ENST00000377755 PEG3Q9GZU2 1588 aa23■■□□□ 1.27
KRT40-201ENST00000377755 ATAD2BQ9ULI0 1458 aa23■■□□□ 1.27
KRT40-201ENST00000377755 CC2D2AQ9P2K1 1620 aa22.94■■□□□ 1.26
KRT40-201ENST00000377755 SMARCA2P51531 1590 aa22.94■■□□□ 1.26
KRT40-201ENST00000377755 NCAPD3P42695 1498 aa22.86■■□□□ 1.25
KRT40-201ENST00000377755 TOP2AP11388 1531 aaKnown RBP22.84■■□□□ 1.25
KRT40-201ENST00000377755 BAZ1BQ9UIG0 1483 aaKnown RBP22.83■■□□□ 1.24
KRT40-201ENST00000377755 HMGXB3Q12766 1538 aa22.76■■□□□ 1.23
KRT40-201ENST00000377755 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
KRT40-201ENST00000377755 CCDC88BA6NC98 1476 aa22.63■■□□□ 1.21
KRT40-201ENST00000377755 CHIC1Q5VXU3 224 aa22.3■■□□□ 1.16
KRT40-201ENST00000377755 CFTRP13569 1480 aa22.25■■□□□ 1.15
KRT40-201ENST00000377755 CADPSQ9ULU8 1353 aa22.25■■□□□ 1.15
KRT40-201ENST00000377755 NESP48681 1621 aa22.18■■□□□ 1.14
KRT40-201ENST00000377755 LAMC3Q9Y6N6 1575 aa22.11■■□□□ 1.13
KRT40-201ENST00000377755 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
KRT40-201ENST00000377755 ABCC8Q09428 1581 aa22.05■■□□□ 1.12
KRT40-201ENST00000377755 FANCD2Q9BXW9 1451 aa21.99■■□□□ 1.11
KRT40-201ENST00000377755 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
KRT40-201ENST00000377755 TRIM41Q8WV44 630 aa21.96■■□□□ 1.11
KRT40-201ENST00000377755 WRNQ14191 1432 aaPredicted RBP eCLIP21.94■■□□□ 1.1
KRT40-201ENST00000377755 CEP164Q9UPV0 1460 aa21.88■■□□□ 1.09
KRT40-201ENST00000377755 KIF21AQ7Z4S6 1674 aa21.87■■□□□ 1.09
KRT40-201ENST00000377755 SYNJ1O43426 1573 aa21.86■■□□□ 1.09
KRT40-201ENST00000377755 CUX1P39880 1505 aa21.83■■□□□ 1.08
KRT40-201ENST00000377755 TOP2BQ02880 1626 aa21.78■■□□□ 1.08
KRT40-201ENST00000377755 ERCC6Q03468 1493 aa21.76■■□□□ 1.07
KRT40-201ENST00000377755 BIVM-ERCC5R4GMW8 1640 aa21.76■■□□□ 1.07
KRT40-201ENST00000377755 URB2Q14146 1524 aaKnown RBP21.75■■□□□ 1.07
KRT40-201ENST00000377755 TOPBP1Q92547 1522 aa21.72■■□□□ 1.07
KRT40-201ENST00000377755 DNMBPQ6XZF7 1577 aa21.71■■□□□ 1.07
KRT40-201ENST00000377755 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
KRT40-201ENST00000377755 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.06
KRT40-201ENST00000377755 THOC2Q8NI27 1593 aaKnown RBP21.6■■□□□ 1.05
KRT40-201ENST00000377755 POLA1P09884 1462 aaPredicted RBP21.6■■□□□ 1.05
KRT40-201ENST00000377755 WDR62O43379 1518 aa21.59■■□□□ 1.05
KRT40-201ENST00000377755 SOGA1O94964 1423 aa21.58■■□□□ 1.04
KRT40-201ENST00000377755 FAM9AQ8IZU1 332 aaPredicted RBP21.57■■□□□ 1.04
KRT40-201ENST00000377755 RAD54L2Q9Y4B4 1467 aa21.54■■□□□ 1.04
KRT40-201ENST00000377755 RUSC2Q8N2Y8 1516 aa21.53■■□□□ 1.04
KRT40-201ENST00000377755 CUX2O14529 1486 aa21.47■■□□□ 1.03
KRT40-201ENST00000377755 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
KRT40-201ENST00000377755 TARBP1Q13395 1621 aaKnown RBP21.42■■□□□ 1.02
KRT40-201ENST00000377755 EEA1Q15075 1411 aa21.42■■□□□ 1.02
KRT40-201ENST00000377755 KIF27Q86VH2 1401 aa21.41■■□□□ 1.02
KRT40-201ENST00000377755 CSRNP3Q8WYN3 585 aa21.39■■□□□ 1.01
KRT40-201ENST00000377755 WDR97A6NE52 1622 aa21.38■■□□□ 1.01
KRT40-201ENST00000377755 IFT140Q96RY7 1462 aa21.38■■□□□ 1.01
KRT40-201ENST00000377755 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
KRT40-201ENST00000377755 LOC105371045A0A1W2PR82 267 aa21.32■■□□□ 1
KRT40-201ENST00000377755 ZNF608Q9ULD9 1512 aaPredicted RBP21.3■■□□□ 1
KRT40-201ENST00000377755 AQRO60306 1485 aaKnown RBP eCLIP21.29■■□□□ 1
KRT40-201ENST00000377755 IGF1RP08069 1367 aa21.29■■□□□ 1
KRT40-201ENST00000377755 EHMT2Q96KQ7 1210 aa21.29■■□□□ 1
KRT40-201ENST00000377755 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
KRT40-201ENST00000377755 GAPVD1Q14C86 1478 aa21.27■■□□□ 1
KRT40-201ENST00000377755 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
KRT40-201ENST00000377755 PRXQ9BXM0 1461 aa21.18■□□□□ 0.98
KRT40-201ENST00000377755 ERICH3Q5RHP9 1530 aa21.17■□□□□ 0.98
KRT40-201ENST00000377755 CARMIL1Q5VZK9 1371 aa21.16■□□□□ 0.98
KRT40-201ENST00000377755 KIF21BO75037 1637 aa21.15■□□□□ 0.98
KRT40-201ENST00000377755 GRIN2BQ13224 1484 aa21.15■□□□□ 0.98
KRT40-201ENST00000377755 PBRM1Q86U86 1689 aa21.14■□□□□ 0.98
KRT40-201ENST00000377755 RAPGEF2Q9Y4G8 1499 aa21.14■□□□□ 0.98
KRT40-201ENST00000377755 GOLGA3Q08378 1498 aa21.12■□□□□ 0.97
KRT40-201ENST00000377755 CUL7Q14999 1698 aa21.09■□□□□ 0.97
KRT40-201ENST00000377755 UBTFP17480 764 aaKnown RBP21.08■□□□□ 0.96
KRT40-201ENST00000377755 SNAPC4Q5SXM2 1469 aa21.06■□□□□ 0.96
KRT40-201ENST00000377755 FHAD1B1AJZ9 1412 aa21.03■□□□□ 0.96
KRT40-201ENST00000377755 ADAMTS12P58397 1594 aa21.02■□□□□ 0.96
KRT40-201ENST00000377755 TNIKQ9UKE5 1360 aa21■□□□□ 0.95
KRT40-201ENST00000377755 MAGI1Q96QZ7 1491 aaPredicted RBP21■□□□□ 0.95
KRT40-201ENST00000377755 SYNJ2O15056 1496 aa20.93■□□□□ 0.94
KRT40-201ENST00000377755 CHMP7Q8WUX9 453 aaPredicted RBP20.93■□□□□ 0.94
KRT40-201ENST00000377755 FBLN2P98095 1184 aa20.92■□□□□ 0.94
KRT40-201ENST00000377755 GRIN2AQ12879 1464 aa20.9■□□□□ 0.94
KRT40-201ENST00000377755 RANGAP1P46060 587 aaPredicted RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms