RNA–Protein interactions for RNA: ENST00000374218.6

PTPN20-201, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN20, Length 2,872 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-201ENST00000374218 NISCHQ9Y2I1 1504 aa21.25■□□□□ 0.99
PTPN20-201ENST00000374218 CCDC180Q9P1Z9 1646 aa18.67■□□□□ 0.58
PTPN20-201ENST00000374218 ABCC9O60706 1549 aa17.98■□□□□ 0.47
PTPN20-201ENST00000374218 ZCCHC6Q5VYS8 1495 aaKnown RBP17.76■□□□□ 0.43
PTPN20-201ENST00000374218 DCAF8L2P0C7V8 631 aa17.75■□□□□ 0.43
PTPN20-201ENST00000374218 DCAF1Q9Y4B6 1507 aa17.61■□□□□ 0.41
PTPN20-201ENST00000374218 MYO15BQ96JP2 1530 aa17.55■□□□□ 0.4
PTPN20-201ENST00000374218 NACADO15069 1562 aa17.53■□□□□ 0.4
PTPN20-201ENST00000374218 RB1CC1Q8TDY2 1594 aa17.45■□□□□ 0.38
PTPN20-201ENST00000374218 SCRIBQ14160 1630 aa17.08■□□□□ 0.33
PTPN20-201ENST00000374218 SHROOM4Q9ULL8 1493 aa17.07■□□□□ 0.32
PTPN20-201ENST00000374218 PABPN1Q86U42 306 aaKnown RBP eCLIP16.91■□□□□ 0.3
PTPN20-201ENST00000374218 UNC13AQ9UPW8 1703 aa16.89■□□□□ 0.29
PTPN20-201ENST00000374218 BICRAQ9NZM4 1560 aa16.83■□□□□ 0.28
PTPN20-201ENST00000374218 CECR2Q9BXF3 1484 aa16.49■□□□□ 0.23
PTPN20-201ENST00000374218 BAZ1AQ9NRL2 1556 aaPredicted RBP16.46■□□□□ 0.23
PTPN20-201ENST00000374218 EIF4G1Q04637 1599 aaKnown RBP16.41■□□□□ 0.22
PTPN20-201ENST00000374218 SMARCA4P51532 1647 aa16.38■□□□□ 0.21
PTPN20-201ENST00000374218 MROH2BQ7Z745 1585 aa16.36■□□□□ 0.21
PTPN20-201ENST00000374218 RSF1Q96T23 1441 aaPredicted RBP16.36■□□□□ 0.21
PTPN20-201ENST00000374218 SUPT5HO00267 1087 aaKnown RBP16.31■□□□□ 0.2
PTPN20-201ENST00000374218 SMARCA2P51531 1590 aa16.25■□□□□ 0.19
PTPN20-201ENST00000374218 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
PTPN20-201ENST00000374218 CC2D2AQ9P2K1 1620 aa16.23■□□□□ 0.19
PTPN20-201ENST00000374218 PEG3Q9GZU2 1588 aa16.21■□□□□ 0.19
PTPN20-201ENST00000374218 NCAPD3P42695 1498 aa16.19■□□□□ 0.18
PTPN20-201ENST00000374218 WIZO95785 1651 aa16.17■□□□□ 0.18
PTPN20-201ENST00000374218 BAZ1BQ9UIG0 1483 aaKnown RBP16.15■□□□□ 0.18
PTPN20-201ENST00000374218 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
PTPN20-201ENST00000374218 HMGXB3Q12766 1538 aa16.11■□□□□ 0.17
PTPN20-201ENST00000374218 TOP2AP11388 1531 aaKnown RBP16.07■□□□□ 0.16
PTPN20-201ENST00000374218 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
PTPN20-201ENST00000374218 CADPSQ9ULU8 1353 aa15.77■□□□□ 0.11
PTPN20-201ENST00000374218 CFTRP13569 1480 aa15.72■□□□□ 0.11
PTPN20-201ENST00000374218 LAMC3Q9Y6N6 1575 aa15.67■□□□□ 0.1
PTPN20-201ENST00000374218 PDS5BQ9NTI5 1447 aa15.64■□□□□ 0.09
PTPN20-201ENST00000374218 NESP48681 1621 aa15.63■□□□□ 0.09
PTPN20-201ENST00000374218 FANCD2Q9BXW9 1451 aa15.56■□□□□ 0.08
PTPN20-201ENST00000374218 ERCC6Q03468 1493 aa15.52■□□□□ 0.08
PTPN20-201ENST00000374218 CEP164Q9UPV0 1460 aa15.51■□□□□ 0.07
PTPN20-201ENST00000374218 PRDM2Q13029 1718 aa15.49■□□□□ 0.07
PTPN20-201ENST00000374218 WRNQ14191 1432 aaPredicted RBP eCLIP15.44■□□□□ 0.06
PTPN20-201ENST00000374218 TRIM41Q8WV44 630 aa15.42■□□□□ 0.06
PTPN20-201ENST00000374218 ABCC8Q09428 1581 aa15.42■□□□□ 0.06
PTPN20-201ENST00000374218 CHIC1Q5VXU3 224 aa15.41■□□□□ 0.06
PTPN20-201ENST00000374218 MRC2Q9UBG0 1479 aa15.4■□□□□ 0.06
PTPN20-201ENST00000374218 KIF21AQ7Z4S6 1674 aa15.39■□□□□ 0.05
PTPN20-201ENST00000374218 DNMBPQ6XZF7 1577 aa15.33■□□□□ 0.05
PTPN20-201ENST00000374218 URB2Q14146 1524 aaKnown RBP15.33■□□□□ 0.04
PTPN20-201ENST00000374218 TOPBP1Q92547 1522 aa15.33■□□□□ 0.04
PTPN20-201ENST00000374218 CUX1P39880 1505 aa15.32■□□□□ 0.04
PTPN20-201ENST00000374218 TOP2BQ02880 1626 aa15.3■□□□□ 0.04
PTPN20-201ENST00000374218 WDR62O43379 1518 aa15.29■□□□□ 0.04
PTPN20-201ENST00000374218 SYNJ1O43426 1573 aa15.29■□□□□ 0.04
PTPN20-201ENST00000374218 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
PTPN20-201ENST00000374218 BIVM-ERCC5R4GMW8 1640 aa15.26■□□□□ 0.03
PTPN20-201ENST00000374218 FGD5Q6ZNL6 1462 aa15.25■□□□□ 0.03
PTPN20-201ENST00000374218 SOGA1O94964 1423 aa15.23■□□□□ 0.03
PTPN20-201ENST00000374218 POLA1P09884 1462 aaPredicted RBP15.22■□□□□ 0.03
PTPN20-201ENST00000374218 CUX2O14529 1486 aa15.18■□□□□ 0.02
PTPN20-201ENST00000374218 IFT140Q96RY7 1462 aa15.18■□□□□ 0.02
PTPN20-201ENST00000374218 RAD54L2Q9Y4B4 1467 aa15.15■□□□□ 0.02
PTPN20-201ENST00000374218 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
PTPN20-201ENST00000374218 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
PTPN20-201ENST00000374218 EEA1Q15075 1411 aa15.09■□□□□ 0.01
PTPN20-201ENST00000374218 TDRD9Q8NDG6 1382 aaKnown RBP15.08■□□□□ 0.01
PTPN20-201ENST00000374218 TARBP1Q13395 1621 aaKnown RBP15.08■□□□□ 0
PTPN20-201ENST00000374218 FAM9AQ8IZU1 332 aaPredicted RBP15.06■□□□□ 0
PTPN20-201ENST00000374218 GAPVD1Q14C86 1478 aa15.03■□□□□ -0
PTPN20-201ENST00000374218 WDR97A6NE52 1622 aa15.03■□□□□ -0
PTPN20-201ENST00000374218 CSRNP3Q8WYN3 585 aa15.03■□□□□ -0
PTPN20-201ENST00000374218 ZNF608Q9ULD9 1512 aaPredicted RBP15.02■□□□□ -0
PTPN20-201ENST00000374218 AQRO60306 1485 aaKnown RBP eCLIP15.02□□□□□ -0.01
PTPN20-201ENST00000374218 RUSC2Q8N2Y8 1516 aa14.99□□□□□ -0.01
PTPN20-201ENST00000374218 GRIN2BQ13224 1484 aa14.99□□□□□ -0.01
PTPN20-201ENST00000374218 IGF1RP08069 1367 aa14.98□□□□□ -0.01
PTPN20-201ENST00000374218 ABCA5Q8WWZ7 1642 aa14.97□□□□□ -0.01
PTPN20-201ENST00000374218 ERICH3Q5RHP9 1530 aa14.95□□□□□ -0.02
PTPN20-201ENST00000374218 EIF4G3O43432 1585 aaKnown RBP14.95□□□□□ -0.02
PTPN20-201ENST00000374218 CARMIL1Q5VZK9 1371 aa14.92□□□□□ -0.02
PTPN20-201ENST00000374218 MAGI1Q96QZ7 1491 aaPredicted RBP14.9□□□□□ -0.02
PTPN20-201ENST00000374218 FHAD1B1AJZ9 1412 aa14.89□□□□□ -0.03
PTPN20-201ENST00000374218 CHMP7Q8WUX9 453 aaPredicted RBP14.88□□□□□ -0.03
PTPN20-201ENST00000374218 SNAPC4Q5SXM2 1469 aa14.88□□□□□ -0.03
PTPN20-201ENST00000374218 PRXQ9BXM0 1461 aa14.87□□□□□ -0.03
PTPN20-201ENST00000374218 CUL7Q14999 1698 aa14.86□□□□□ -0.03
PTPN20-201ENST00000374218 FBLN2P98095 1184 aa14.86□□□□□ -0.03
PTPN20-201ENST00000374218 PBRM1Q86U86 1689 aa14.86□□□□□ -0.03
PTPN20-201ENST00000374218 RAPGEF2Q9Y4G8 1499 aa14.85□□□□□ -0.03
PTPN20-201ENST00000374218 SYNJ2O15056 1496 aa14.84□□□□□ -0.03
PTPN20-201ENST00000374218 UBTFP17480 764 aaKnown RBP14.83□□□□□ -0.04
PTPN20-201ENST00000374218 EHMT2Q96KQ7 1210 aa14.82□□□□□ -0.04
PTPN20-201ENST00000374218 GOLGA3Q08378 1498 aa14.82□□□□□ -0.04
PTPN20-201ENST00000374218 ADAMTS12P58397 1594 aa14.81□□□□□ -0.04
PTPN20-201ENST00000374218 KIF21BO75037 1637 aa14.81□□□□□ -0.04
PTPN20-201ENST00000374218 LOC105371045A0A1W2PR82 267 aa14.78□□□□□ -0.04
PTPN20-201ENST00000374218 GRIN2AQ12879 1464 aa14.77□□□□□ -0.04
PTPN20-201ENST00000374218 TNIKQ9UKE5 1360 aa14.71□□□□□ -0.05
PTPN20-201ENST00000374218 OSCARQ8IYS5 282 aa14.71□□□□□ -0.06
PTPN20-201ENST00000374218 NUP160Q12769 1436 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms