RNA–Protein interactions for RNA: ENST00000373997.7

A1CF-204, Transcript of APOBEC1 complementation factor, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene A1CF, Length 2,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
A1CF-204ENST00000373997 NISCHQ9Y2I1 1504 aa29.56■■■□□ 2.32
A1CF-204ENST00000373997 CCDC180Q9P1Z9 1646 aa25.82■■□□□ 1.72
A1CF-204ENST00000373997 ZCCHC6Q5VYS8 1495 aaKnown RBP24.85■■□□□ 1.57
A1CF-204ENST00000373997 DCAF8L2P0C7V8 631 aa24.46■■□□□ 1.51
A1CF-204ENST00000373997 ABCC9O60706 1549 aa24.39■■□□□ 1.5
A1CF-204ENST00000373997 DCAF1Q9Y4B6 1507 aa24.38■■□□□ 1.49
A1CF-204ENST00000373997 SHROOM4Q9ULL8 1493 aa24.27■■□□□ 1.48
A1CF-204ENST00000373997 MYO15BQ96JP2 1530 aa24.04■■□□□ 1.44
A1CF-204ENST00000373997 NACADO15069 1562 aa23.97■■□□□ 1.43
A1CF-204ENST00000373997 SCRIBQ14160 1630 aa23.82■■□□□ 1.4
A1CF-204ENST00000373997 RB1CC1Q8TDY2 1594 aa23.79■■□□□ 1.4
A1CF-204ENST00000373997 UNC13AQ9UPW8 1703 aa23.49■■□□□ 1.35
A1CF-204ENST00000373997 SUPT5HO00267 1087 aaKnown RBP23.32■■□□□ 1.32
A1CF-204ENST00000373997 BICRAQ9NZM4 1560 aa23.1■■□□□ 1.29
A1CF-204ENST00000373997 CECR2Q9BXF3 1484 aa23.01■■□□□ 1.27
A1CF-204ENST00000373997 PABPN1Q86U42 306 aaKnown RBP eCLIP22.98■■□□□ 1.27
A1CF-204ENST00000373997 RSF1Q96T23 1441 aaPredicted RBP22.93■■□□□ 1.26
A1CF-204ENST00000373997 MROH2BQ7Z745 1585 aa22.89■■□□□ 1.25
A1CF-204ENST00000373997 BAZ1AQ9NRL2 1556 aaPredicted RBP22.83■■□□□ 1.25
A1CF-204ENST00000373997 SMARCA4P51532 1647 aa22.78■■□□□ 1.24
A1CF-204ENST00000373997 WIZO95785 1651 aa22.77■■□□□ 1.24
A1CF-204ENST00000373997 TOP2AP11388 1531 aaKnown RBP22.46■■□□□ 1.19
A1CF-204ENST00000373997 PEG3Q9GZU2 1588 aa22.42■■□□□ 1.18
A1CF-204ENST00000373997 EIF4G1Q04637 1599 aaKnown RBP22.39■■□□□ 1.18
A1CF-204ENST00000373997 SMARCA2P51531 1590 aa22.33■■□□□ 1.16
A1CF-204ENST00000373997 ATAD2BQ9ULI0 1458 aa22.32■■□□□ 1.16
A1CF-204ENST00000373997 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
A1CF-204ENST00000373997 BAZ1BQ9UIG0 1483 aaKnown RBP22.24■■□□□ 1.15
A1CF-204ENST00000373997 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
A1CF-204ENST00000373997 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
A1CF-204ENST00000373997 CC2D2AQ9P2K1 1620 aa22.08■■□□□ 1.13
A1CF-204ENST00000373997 NCAPD3P42695 1498 aa22.07■■□□□ 1.12
A1CF-204ENST00000373997 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
A1CF-204ENST00000373997 ABCC8Q09428 1581 aa21.86■■□□□ 1.09
A1CF-204ENST00000373997 PRDM2Q13029 1718 aa21.71■■□□□ 1.07
A1CF-204ENST00000373997 CFTRP13569 1480 aa21.62■■□□□ 1.05
A1CF-204ENST00000373997 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.05
A1CF-204ENST00000373997 SYNJ1O43426 1573 aa21.59■■□□□ 1.05
A1CF-204ENST00000373997 FAM9AQ8IZU1 332 aaPredicted RBP21.55■■□□□ 1.04
A1CF-204ENST00000373997 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
A1CF-204ENST00000373997 HRCP23327 699 aa21.5■■□□□ 1.03
A1CF-204ENST00000373997 LOC105371045A0A1W2PR82 267 aa21.48■■□□□ 1.03
A1CF-204ENST00000373997 DNAJC5BQ9UF47 199 aa21.47■■□□□ 1.03
A1CF-204ENST00000373997 BIVM-ERCC5R4GMW8 1640 aa21.47■■□□□ 1.03
A1CF-204ENST00000373997 TOP2BQ02880 1626 aa21.46■■□□□ 1.03
A1CF-204ENST00000373997 NESP48681 1621 aa21.44■■□□□ 1.02
A1CF-204ENST00000373997 CUX1P39880 1505 aa21.4■■□□□ 1.02
A1CF-204ENST00000373997 LAMC3Q9Y6N6 1575 aa21.39■■□□□ 1.01
A1CF-204ENST00000373997 SOGA1O94964 1423 aa21.38■■□□□ 1.01
A1CF-204ENST00000373997 FANCD2Q9BXW9 1451 aa21.35■■□□□ 1.01
A1CF-204ENST00000373997 RUSC2Q8N2Y8 1516 aa21.32■■□□□ 1
A1CF-204ENST00000373997 EHMT2Q96KQ7 1210 aa21.32■■□□□ 1
A1CF-204ENST00000373997 PCGF6Q9BYE7 350 aa21.27■■□□□ 1
A1CF-204ENST00000373997 KIF21AQ7Z4S6 1674 aa21.27■■□□□ 1
A1CF-204ENST00000373997 EEA1Q15075 1411 aa21.26■□□□□ 0.99
A1CF-204ENST00000373997 CEP164Q9UPV0 1460 aa21.22■□□□□ 0.99
A1CF-204ENST00000373997 DNMBPQ6XZF7 1577 aa21.19■□□□□ 0.98
A1CF-204ENST00000373997 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
A1CF-204ENST00000373997 CSRNP3Q8WYN3 585 aa21.16■□□□□ 0.98
A1CF-204ENST00000373997 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
A1CF-204ENST00000373997 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
A1CF-204ENST00000373997 URB2Q14146 1524 aaKnown RBP21.1■□□□□ 0.97
A1CF-204ENST00000373997 KIF21BO75037 1637 aa21.08■□□□□ 0.97
A1CF-204ENST00000373997 GOLGA3Q08378 1498 aa21.04■□□□□ 0.96
A1CF-204ENST00000373997 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
A1CF-204ENST00000373997 POLA1P09884 1462 aaPredicted RBP21.03■□□□□ 0.96
A1CF-204ENST00000373997 CUX2O14529 1486 aa21.02■□□□□ 0.96
A1CF-204ENST00000373997 RAD54L2Q9Y4B4 1467 aa20.99■□□□□ 0.95
A1CF-204ENST00000373997 TRIM26Q12899 539 aaPredicted RBP20.98■□□□□ 0.95
A1CF-204ENST00000373997 WDR97A6NE52 1622 aa20.97■□□□□ 0.95
A1CF-204ENST00000373997 RAPGEF2Q9Y4G8 1499 aa20.95■□□□□ 0.94
A1CF-204ENST00000373997 UBTFP17480 764 aaKnown RBP20.95■□□□□ 0.94
A1CF-204ENST00000373997 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
A1CF-204ENST00000373997 TNIKQ9UKE5 1360 aa20.93■□□□□ 0.94
A1CF-204ENST00000373997 ABCA10Q8WWZ4 1543 aa20.92■□□□□ 0.94
A1CF-204ENST00000373997 ERCC6Q03468 1493 aa20.9■□□□□ 0.94
A1CF-204ENST00000373997 ERICH3Q5RHP9 1530 aa20.9■□□□□ 0.94
A1CF-204ENST00000373997 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
A1CF-204ENST00000373997 CEP162Q5TB80 1403 aa20.89■□□□□ 0.93
A1CF-204ENST00000373997 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
A1CF-204ENST00000373997 WDR62O43379 1518 aa20.84■□□□□ 0.93
A1CF-204ENST00000373997 PPARGC1BQ86YN6 1023 aaKnown RBP20.83■□□□□ 0.93
A1CF-204ENST00000373997 THOC2Q8NI27 1593 aaKnown RBP20.83■□□□□ 0.92
A1CF-204ENST00000373997 ABCA5Q8WWZ7 1642 aa20.82■□□□□ 0.92
A1CF-204ENST00000373997 IGF1RP08069 1367 aa20.81■□□□□ 0.92
A1CF-204ENST00000373997 CUL7Q14999 1698 aa20.76■□□□□ 0.91
A1CF-204ENST00000373997 TDRD9Q8NDG6 1382 aaKnown RBP20.75■□□□□ 0.91
A1CF-204ENST00000373997 CARMIL1Q5VZK9 1371 aa20.74■□□□□ 0.91
A1CF-204ENST00000373997 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
A1CF-204ENST00000373997 GAPVD1Q14C86 1478 aa20.73■□□□□ 0.91
A1CF-204ENST00000373997 CLIP1P30622 1438 aa20.71■□□□□ 0.91
A1CF-204ENST00000373997 RANGAP1P46060 587 aaPredicted RBP20.69■□□□□ 0.9
A1CF-204ENST00000373997 ZEB1P37275 1124 aaPredicted RBP20.69■□□□□ 0.9
A1CF-204ENST00000373997 IFT140Q96RY7 1462 aa20.67■□□□□ 0.9
A1CF-204ENST00000373997 CTTNBP2Q8WZ74 1663 aa20.63■□□□□ 0.89
A1CF-204ENST00000373997 AQRO60306 1485 aaKnown RBP eCLIP20.62■□□□□ 0.894e-7■■■□□ 15.4
A1CF-204ENST00000373997 ZNF608Q9ULD9 1512 aaPredicted RBP20.62■□□□□ 0.89
A1CF-204ENST00000373997 EIF4G3O43432 1585 aaKnown RBP20.6■□□□□ 0.89
A1CF-204ENST00000373997 ADAMTS12P58397 1594 aa20.55■□□□□ 0.88
A1CF-204ENST00000373997 GRIN2BQ13224 1484 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms