RNA–Protein interactions for RNA: ENST00000372972.6

CSTF2-201, Transcript of cleavage stimulation factor subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF2, Length 1,958 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF2-201ENST00000372972 NISCHQ9Y2I1 1504 aa29.39■■■□□ 2.3
CSTF2-201ENST00000372972 CCDC180Q9P1Z9 1646 aa25.54■■□□□ 1.68
CSTF2-201ENST00000372972 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.54
CSTF2-201ENST00000372972 DCAF8L2P0C7V8 631 aa24.33■■□□□ 1.48
CSTF2-201ENST00000372972 DCAF1Q9Y4B6 1507 aa24.26■■□□□ 1.47
CSTF2-201ENST00000372972 SHROOM4Q9ULL8 1493 aa24.16■■□□□ 1.46
CSTF2-201ENST00000372972 ABCC9O60706 1549 aa24.16■■□□□ 1.46
CSTF2-201ENST00000372972 MYO15BQ96JP2 1530 aa23.92■■□□□ 1.42
CSTF2-201ENST00000372972 NACADO15069 1562 aa23.78■■□□□ 1.4
CSTF2-201ENST00000372972 SCRIBQ14160 1630 aa23.57■■□□□ 1.36
CSTF2-201ENST00000372972 RB1CC1Q8TDY2 1594 aa23.56■■□□□ 1.36
CSTF2-201ENST00000372972 SUPT5HO00267 1087 aaKnown RBP23.52■■□□□ 1.36
CSTF2-201ENST00000372972 UNC13AQ9UPW8 1703 aa23.12■■□□□ 1.29
CSTF2-201ENST00000372972 BICRAQ9NZM4 1560 aa22.88■■□□□ 1.25
CSTF2-201ENST00000372972 CECR2Q9BXF3 1484 aa22.87■■□□□ 1.25
CSTF2-201ENST00000372972 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
CSTF2-201ENST00000372972 PABPN1Q86U42 306 aaKnown RBP eCLIP22.83■■□□□ 1.24
CSTF2-201ENST00000372972 MROH2BQ7Z745 1585 aa22.74■■□□□ 1.23
CSTF2-201ENST00000372972 CHIC1Q5VXU3 224 aa22.74■■□□□ 1.23
CSTF2-201ENST00000372972 BAZ1AQ9NRL2 1556 aaPredicted RBP22.67■■□□□ 1.22
CSTF2-201ENST00000372972 SMARCA4P51532 1647 aa22.57■■□□□ 1.2
CSTF2-201ENST00000372972 WIZO95785 1651 aa22.56■■□□□ 1.2
CSTF2-201ENST00000372972 TOP2AP11388 1531 aaKnown RBP22.29■■□□□ 1.16
CSTF2-201ENST00000372972 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
CSTF2-201ENST00000372972 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
CSTF2-201ENST00000372972 EIF4G1Q04637 1599 aaKnown RBP22.17■■□□□ 1.14
CSTF2-201ENST00000372972 SMARCA2P51531 1590 aa22.15■■□□□ 1.14
CSTF2-201ENST00000372972 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
CSTF2-201ENST00000372972 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
CSTF2-201ENST00000372972 TRIM41Q8WV44 630 aa22.06■■□□□ 1.12
CSTF2-201ENST00000372972 NCAPD3P42695 1498 aa21.96■■□□□ 1.11
CSTF2-201ENST00000372972 LOC105371045A0A1W2PR82 267 aa21.94■■□□□ 1.1
CSTF2-201ENST00000372972 HMGXB3Q12766 1538 aa21.92■■□□□ 1.1
CSTF2-201ENST00000372972 CC2D2AQ9P2K1 1620 aa21.84■■□□□ 1.09
CSTF2-201ENST00000372972 FAM9AQ8IZU1 332 aaPredicted RBP21.7■■□□□ 1.07
CSTF2-201ENST00000372972 ABCC8Q09428 1581 aa21.68■■□□□ 1.06
CSTF2-201ENST00000372972 CFTRP13569 1480 aa21.51■■□□□ 1.03
CSTF2-201ENST00000372972 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
CSTF2-201ENST00000372972 PCGF6Q9BYE7 350 aa21.45■■□□□ 1.02
CSTF2-201ENST00000372972 CADPSQ9ULU8 1353 aa21.42■■□□□ 1.02
CSTF2-201ENST00000372972 SYNJ1O43426 1573 aa21.42■■□□□ 1.02
CSTF2-201ENST00000372972 EHMT2Q96KQ7 1210 aa21.41■■□□□ 1.02
CSTF2-201ENST00000372972 PRDM2Q13029 1718 aa21.38■■□□□ 1.01
CSTF2-201ENST00000372972 SOGA1O94964 1423 aa21.34■■□□□ 1.01
CSTF2-201ENST00000372972 EEA1Q15075 1411 aa21.34■■□□□ 1.01
CSTF2-201ENST00000372972 DNAJC5BQ9UF47 199 aa21.34■■□□□ 1.01
CSTF2-201ENST00000372972 TOP2BQ02880 1626 aa21.3■■□□□ 1
CSTF2-201ENST00000372972 TRIM26Q12899 539 aaPredicted RBP21.29■■□□□ 1
CSTF2-201ENST00000372972 BIVM-ERCC5R4GMW8 1640 aa21.27■■□□□ 1
CSTF2-201ENST00000372972 CSRNP3Q8WYN3 585 aa21.26■□□□□ 0.99
CSTF2-201ENST00000372972 CUX1P39880 1505 aa21.25■□□□□ 0.99
CSTF2-201ENST00000372972 NESP48681 1621 aa21.24■□□□□ 0.99
CSTF2-201ENST00000372972 RUSC2Q8N2Y8 1516 aa21.22■□□□□ 0.99
CSTF2-201ENST00000372972 FANCD2Q9BXW9 1451 aa21.19■□□□□ 0.98
CSTF2-201ENST00000372972 HRCP23327 699 aa21.19■□□□□ 0.98
CSTF2-201ENST00000372972 LAMC3Q9Y6N6 1575 aa21.19■□□□□ 0.98
CSTF2-201ENST00000372972 TNIKQ9UKE5 1360 aa21.13■□□□□ 0.97
CSTF2-201ENST00000372972 GOLGA3Q08378 1498 aa21.07■□□□□ 0.96
CSTF2-201ENST00000372972 UBTFP17480 764 aaKnown RBP21.06■□□□□ 0.96
CSTF2-201ENST00000372972 CEP162Q5TB80 1403 aa21.05■□□□□ 0.96
CSTF2-201ENST00000372972 CEP164Q9UPV0 1460 aa21.04■□□□□ 0.96
CSTF2-201ENST00000372972 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
CSTF2-201ENST00000372972 DNMBPQ6XZF7 1577 aa21■□□□□ 0.95
CSTF2-201ENST00000372972 KIF21BO75037 1637 aa21■□□□□ 0.95
CSTF2-201ENST00000372972 FGD5Q6ZNL6 1462 aa21■□□□□ 0.95
CSTF2-201ENST00000372972 TOPBP1Q92547 1522 aa20.97■□□□□ 0.95
CSTF2-201ENST00000372972 KIF21AQ7Z4S6 1674 aa20.96■□□□□ 0.95
CSTF2-201ENST00000372972 KIF27Q86VH2 1401 aa20.94■□□□□ 0.94
CSTF2-201ENST00000372972 URB2Q14146 1524 aaKnown RBP20.94■□□□□ 0.94
CSTF2-201ENST00000372972 CUX2O14529 1486 aa20.89■□□□□ 0.93
CSTF2-201ENST00000372972 PPARGC1BQ86YN6 1023 aaKnown RBP20.88■□□□□ 0.93
CSTF2-201ENST00000372972 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
CSTF2-201ENST00000372972 RAPGEF2Q9Y4G8 1499 aa20.86■□□□□ 0.93
CSTF2-201ENST00000372972 RAD54L2Q9Y4B4 1467 aa20.84■□□□□ 0.93
CSTF2-201ENST00000372972 PRXQ9BXM0 1461 aa20.83■□□□□ 0.92
CSTF2-201ENST00000372972 ABCA10Q8WWZ4 1543 aa20.8■□□□□ 0.92
CSTF2-201ENST00000372972 CLIP1P30622 1438 aa20.78■□□□□ 0.92
CSTF2-201ENST00000372972 ERICH3Q5RHP9 1530 aa20.77■□□□□ 0.92
CSTF2-201ENST00000372972 IGF1RP08069 1367 aa20.77■□□□□ 0.91
CSTF2-201ENST00000372972 MRC2Q9UBG0 1479 aa20.76■□□□□ 0.91
CSTF2-201ENST00000372972 WDR97A6NE52 1622 aa20.72■□□□□ 0.91
CSTF2-201ENST00000372972 ZEB1P37275 1124 aaPredicted RBP20.68■□□□□ 0.9
CSTF2-201ENST00000372972 ERCC6Q03468 1493 aa20.68■□□□□ 0.9
CSTF2-201ENST00000372972 CARMIL1Q5VZK9 1371 aa20.66■□□□□ 0.9
CSTF2-201ENST00000372972 VPS8Q8N3P4 1428 aa20.65■□□□□ 0.9
CSTF2-201ENST00000372972 TARBP1Q13395 1621 aaKnown RBP20.65■□□□□ 0.9
CSTF2-201ENST00000372972 WDR62O43379 1518 aa20.65■□□□□ 0.9
CSTF2-201ENST00000372972 TDRD9Q8NDG6 1382 aaKnown RBP20.63■□□□□ 0.89
CSTF2-201ENST00000372972 ABCA5Q8WWZ7 1642 aa20.62■□□□□ 0.89
CSTF2-201ENST00000372972 TTBK1Q5TCY1 1321 aaPredicted RBP20.61■□□□□ 0.89
CSTF2-201ENST00000372972 RANGAP1P46060 587 aaPredicted RBP20.61■□□□□ 0.89
CSTF2-201ENST00000372972 GAPVD1Q14C86 1478 aa20.59■□□□□ 0.89
CSTF2-201ENST00000372972 THOC2Q8NI27 1593 aaKnown RBP20.57■□□□□ 0.88
CSTF2-201ENST00000372972 CUL7Q14999 1698 aa20.56■□□□□ 0.88
CSTF2-201ENST00000372972 APLP2Q06481 763 aa20.54■□□□□ 0.88
CSTF2-201ENST00000372972 IFT140Q96RY7 1462 aa20.52■□□□□ 0.88
CSTF2-201ENST00000372972 AQRO60306 1485 aaKnown RBP eCLIP20.49■□□□□ 0.87
CSTF2-201ENST00000372972 ARAP1Q96P48 1450 aa20.49■□□□□ 0.87
CSTF2-201ENST00000372972 PBRM1Q86U86 1689 aa20.46■□□□□ 0.87
CSTF2-201ENST00000372972 ZNF608Q9ULD9 1512 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 728.9 ms