RNA–Protein interactions for RNA: ENST00000372003.5

TSPAN1-201, Transcript of tetraspanin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN1, Length 1,615 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN1-201ENST00000372003 NISCHQ9Y2I1 1504 aa25.83■■□□□ 1.72
TSPAN1-201ENST00000372003 CCDC180Q9P1Z9 1646 aa22.71■■□□□ 1.23
TSPAN1-201ENST00000372003 ABCC9O60706 1549 aa22.19■■□□□ 1.14
TSPAN1-201ENST00000372003 DCAF8L2P0C7V8 631 aa21.72■■□□□ 1.07
TSPAN1-201ENST00000372003 ZCCHC6Q5VYS8 1495 aaKnown RBP21.54■■□□□ 1.04
TSPAN1-201ENST00000372003 NACADO15069 1562 aa21.37■■□□□ 1.01
TSPAN1-201ENST00000372003 RB1CC1Q8TDY2 1594 aa21.34■■□□□ 1.01
TSPAN1-201ENST00000372003 DCAF1Q9Y4B6 1507 aa21.3■■□□□ 1
TSPAN1-201ENST00000372003 MYO15BQ96JP2 1530 aa21.28■■□□□ 1
TSPAN1-201ENST00000372003 SCRIBQ14160 1630 aa20.89■□□□□ 0.93
TSPAN1-201ENST00000372003 PABPN1Q86U42 306 aaKnown RBP eCLIP20.86■□□□□ 0.93
TSPAN1-201ENST00000372003 UNC13AQ9UPW8 1703 aa20.77■□□□□ 0.92
TSPAN1-201ENST00000372003 SHROOM4Q9ULL8 1493 aa20.75■□□□□ 0.91
TSPAN1-201ENST00000372003 BICRAQ9NZM4 1560 aa20.68■□□□□ 0.9
TSPAN1-201ENST00000372003 DNAJC5BQ9UF47 199 aa20.18■□□□□ 0.82
TSPAN1-201ENST00000372003 CECR2Q9BXF3 1484 aa20.15■□□□□ 0.82
TSPAN1-201ENST00000372003 EIF4G1Q04637 1599 aaKnown RBP20.13■□□□□ 0.81
TSPAN1-201ENST00000372003 CC2D2AQ9P2K1 1620 aa20■□□□□ 0.79
TSPAN1-201ENST00000372003 BAZ1AQ9NRL2 1556 aaPredicted RBP19.98■□□□□ 0.79
TSPAN1-201ENST00000372003 SMARCA4P51532 1647 aa19.95■□□□□ 0.78
TSPAN1-201ENST00000372003 MROH2BQ7Z745 1585 aa19.94■□□□□ 0.78
TSPAN1-201ENST00000372003 ATAD2BQ9ULI0 1458 aa19.83■□□□□ 0.77
TSPAN1-201ENST00000372003 RSF1Q96T23 1441 aaPredicted RBP19.83■□□□□ 0.76
TSPAN1-201ENST00000372003 SMARCA2P51531 1590 aa19.77■□□□□ 0.75
TSPAN1-201ENST00000372003 NCAPD3P42695 1498 aa19.76■□□□□ 0.75
TSPAN1-201ENST00000372003 WIZO95785 1651 aa19.71■□□□□ 0.75
TSPAN1-201ENST00000372003 PEG3Q9GZU2 1588 aa19.7■□□□□ 0.74
TSPAN1-201ENST00000372003 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
TSPAN1-201ENST00000372003 SUPT5HO00267 1087 aaKnown RBP19.68■□□□□ 0.74
TSPAN1-201ENST00000372003 HMGXB3Q12766 1538 aa19.63■□□□□ 0.73
TSPAN1-201ENST00000372003 TOP2AP11388 1531 aaKnown RBP19.49■□□□□ 0.71
TSPAN1-201ENST00000372003 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
TSPAN1-201ENST00000372003 NESP48681 1621 aa19.26■□□□□ 0.67
TSPAN1-201ENST00000372003 CADPSQ9ULU8 1353 aa19.24■□□□□ 0.67
TSPAN1-201ENST00000372003 LAMC3Q9Y6N6 1575 aa19.15■□□□□ 0.66
TSPAN1-201ENST00000372003 CFTRP13569 1480 aa19.15■□□□□ 0.66
TSPAN1-201ENST00000372003 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
TSPAN1-201ENST00000372003 PDS5BQ9NTI5 1447 aa19.09■□□□□ 0.65
TSPAN1-201ENST00000372003 FANCD2Q9BXW9 1451 aa19.01■□□□□ 0.63
TSPAN1-201ENST00000372003 CEP164Q9UPV0 1460 aa18.94■□□□□ 0.62
TSPAN1-201ENST00000372003 KIF21AQ7Z4S6 1674 aa18.93■□□□□ 0.62
TSPAN1-201ENST00000372003 MRC2Q9UBG0 1479 aa18.85■□□□□ 0.61
TSPAN1-201ENST00000372003 PRDM2Q13029 1718 aa18.85■□□□□ 0.61
TSPAN1-201ENST00000372003 HRCP23327 699 aa18.81■□□□□ 0.6
TSPAN1-201ENST00000372003 THOC2Q8NI27 1593 aaKnown RBP18.8■□□□□ 0.6
TSPAN1-201ENST00000372003 URB2Q14146 1524 aaKnown RBP18.79■□□□□ 0.6
TSPAN1-201ENST00000372003 WDR62O43379 1518 aa18.74■□□□□ 0.59
TSPAN1-201ENST00000372003 TOPBP1Q92547 1522 aa18.72■□□□□ 0.59
TSPAN1-201ENST00000372003 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
TSPAN1-201ENST00000372003 CUX2O14529 1486 aa18.71■□□□□ 0.58
TSPAN1-201ENST00000372003 CHIC1Q5VXU3 224 aa18.71■□□□□ 0.58
TSPAN1-201ENST00000372003 WRNQ14191 1432 aaPredicted RBP eCLIP18.69■□□□□ 0.58
TSPAN1-201ENST00000372003 DNMBPQ6XZF7 1577 aa18.68■□□□□ 0.58
TSPAN1-201ENST00000372003 CUX1P39880 1505 aa18.68■□□□□ 0.58
TSPAN1-201ENST00000372003 POLA1P09884 1462 aaPredicted RBP18.58■□□□□ 0.57
TSPAN1-201ENST00000372003 FGD5Q6ZNL6 1462 aa18.58■□□□□ 0.57
TSPAN1-201ENST00000372003 SYNJ1O43426 1573 aa18.58■□□□□ 0.56
TSPAN1-201ENST00000372003 SOGA1O94964 1423 aa18.56■□□□□ 0.56
TSPAN1-201ENST00000372003 RAD54L2Q9Y4B4 1467 aa18.56■□□□□ 0.56
TSPAN1-201ENST00000372003 TOP2BQ02880 1626 aa18.54■□□□□ 0.56
TSPAN1-201ENST00000372003 TRIM41Q8WV44 630 aa18.53■□□□□ 0.56
TSPAN1-201ENST00000372003 IFT140Q96RY7 1462 aa18.53■□□□□ 0.56
TSPAN1-201ENST00000372003 BIVM-ERCC5R4GMW8 1640 aa18.49■□□□□ 0.55
TSPAN1-201ENST00000372003 ZNF608Q9ULD9 1512 aaPredicted RBP18.47■□□□□ 0.55
TSPAN1-201ENST00000372003 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
TSPAN1-201ENST00000372003 TARBP1Q13395 1621 aaKnown RBP18.44■□□□□ 0.54
TSPAN1-201ENST00000372003 AQRO60306 1485 aaKnown RBP eCLIP18.43■□□□□ 0.54
TSPAN1-201ENST00000372003 ABCA10Q8WWZ4 1543 aa18.39■□□□□ 0.53
TSPAN1-201ENST00000372003 PCGF6Q9BYE7 350 aa18.36■□□□□ 0.53
TSPAN1-201ENST00000372003 EIF4G3O43432 1585 aaKnown RBP18.32■□□□□ 0.52
TSPAN1-201ENST00000372003 GAPVD1Q14C86 1478 aa18.32■□□□□ 0.52
TSPAN1-201ENST00000372003 WDR97A6NE52 1622 aa18.29■□□□□ 0.52
TSPAN1-201ENST00000372003 KIF27Q86VH2 1401 aa18.28■□□□□ 0.52
TSPAN1-201ENST00000372003 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
TSPAN1-201ENST00000372003 FBLN2P98095 1184 aa18.26■□□□□ 0.51
TSPAN1-201ENST00000372003 ABCA5Q8WWZ7 1642 aa18.24■□□□□ 0.51
TSPAN1-201ENST00000372003 RUSC2Q8N2Y8 1516 aa18.23■□□□□ 0.51
TSPAN1-201ENST00000372003 SNAPC4Q5SXM2 1469 aa18.22■□□□□ 0.51
TSPAN1-201ENST00000372003 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
TSPAN1-201ENST00000372003 IGF1RP08069 1367 aa18.2■□□□□ 0.5
TSPAN1-201ENST00000372003 CHMP7Q8WUX9 453 aaPredicted RBP18.2■□□□□ 0.5
TSPAN1-201ENST00000372003 MAGI1Q96QZ7 1491 aaPredicted RBP18.16■□□□□ 0.5
TSPAN1-201ENST00000372003 ERICH3Q5RHP9 1530 aa18.15■□□□□ 0.5
TSPAN1-201ENST00000372003 PBRM1Q86U86 1689 aa18.15■□□□□ 0.5
TSPAN1-201ENST00000372003 TRIM26Q12899 539 aaPredicted RBP18.15■□□□□ 0.5
TSPAN1-201ENST00000372003 FHAD1B1AJZ9 1412 aa18.11■□□□□ 0.49
TSPAN1-201ENST00000372003 OSCARQ8IYS5 282 aa18.11■□□□□ 0.49
TSPAN1-201ENST00000372003 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
TSPAN1-201ENST00000372003 SYNJ2O15056 1496 aa18.11■□□□□ 0.49
TSPAN1-201ENST00000372003 CARMIL1Q5VZK9 1371 aa18.09■□□□□ 0.49
TSPAN1-201ENST00000372003 ZEB1P37275 1124 aaPredicted RBP18.07■□□□□ 0.48
TSPAN1-201ENST00000372003 ADAMTS12P58397 1594 aa18.06■□□□□ 0.48
TSPAN1-201ENST00000372003 PPARGC1BQ86YN6 1023 aaKnown RBP18.06■□□□□ 0.48
TSPAN1-201ENST00000372003 EEA1Q15075 1411 aa18.06■□□□□ 0.48
TSPAN1-201ENST00000372003 GRIN2AQ12879 1464 aa18.03■□□□□ 0.48
TSPAN1-201ENST00000372003 EHMT2Q96KQ7 1210 aa18.01■□□□□ 0.47
TSPAN1-201ENST00000372003 CHD1O14646 1710 aa18.01■□□□□ 0.47
TSPAN1-201ENST00000372003 CUL7Q14999 1698 aa18■□□□□ 0.47
TSPAN1-201ENST00000372003 LOC105371045A0A1W2PR82 267 aa17.98■□□□□ 0.47
TSPAN1-201ENST00000372003 RAPGEF2Q9Y4G8 1499 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms