RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 NISCHQ9Y2I1 1504 aa55.08■■■■■ 6.41
SNX3-203ENST00000368979 CCDC180Q9P1Z9 1646 aa48.27■■■■■ 5.32
SNX3-203ENST00000368979 ZCCHC6Q5VYS8 1495 aaKnown RBP46.25■■■■■ 4.99
SNX3-203ENST00000368979 ABCC9O60706 1549 aa45.76■■■■■ 4.92
SNX3-203ENST00000368979 DCAF1Q9Y4B6 1507 aa45.62■■■■■ 4.89
SNX3-203ENST00000368979 DCAF8L2P0C7V8 631 aa45.33■■■■■ 4.85
SNX3-203ENST00000368979 MYO15BQ96JP2 1530 aa45.21■■■■■ 4.83
SNX3-203ENST00000368979 NACADO15069 1562 aa44.97■■■■■ 4.79
SNX3-203ENST00000368979 RB1CC1Q8TDY2 1594 aa44.66■■■■■ 4.74
SNX3-203ENST00000368979 SHROOM4Q9ULL8 1493 aa44.53■■■■■ 4.72
SNX3-203ENST00000368979 SCRIBQ14160 1630 aa44.23■■■■■ 4.67
SNX3-203ENST00000368979 UNC13AQ9UPW8 1703 aa43.76■■■■■ 4.6
SNX3-203ENST00000368979 BICRAQ9NZM4 1560 aa43.33■■■■■ 4.53
SNX3-203ENST00000368979 PABPN1Q86U42 306 aaKnown RBP eCLIP43■■■■■ 4.47
SNX3-203ENST00000368979 CECR2Q9BXF3 1484 aa42.78■■■■■ 4.44
SNX3-203ENST00000368979 SUPT5HO00267 1087 aaKnown RBP42.65■■■■■ 4.42
SNX3-203ENST00000368979 BAZ1AQ9NRL2 1556 aaPredicted RBP42.57■■■■■ 4.41
SNX3-203ENST00000368979 RSF1Q96T23 1441 aaPredicted RBP42.56■■■■■ 4.4
SNX3-203ENST00000368979 MROH2BQ7Z745 1585 aa42.52■■■■■ 4.4
SNX3-203ENST00000368979 SMARCA4P51532 1647 aa42.43■■■■■ 4.38
SNX3-203ENST00000368979 WIZO95785 1651 aa42.16■■■■■ 4.34
SNX3-203ENST00000368979 EIF4G1Q04637 1599 aaKnown RBP42.02■■■■■ 4.32
SNX3-203ENST00000368979 PEG3Q9GZU2 1588 aa41.98■■■■■ 4.31
SNX3-203ENST00000368979 ATAD2BQ9ULI0 1458 aa41.78■■■■■ 4.28
SNX3-203ENST00000368979 SMARCA2P51531 1590 aa41.77■■■■■ 4.28
SNX3-203ENST00000368979 TOP2AP11388 1531 aaKnown RBP41.76■■■■■ 4.28
SNX3-203ENST00000368979 DNAJC5BQ9UF47 199 aa41.65■■■■■ 4.26
SNX3-203ENST00000368979 BAZ1BQ9UIG0 1483 aaKnown RBP41.51■■■■■ 4.24
SNX3-203ENST00000368979 NCAPD3P42695 1498 aa41.49■■■■■ 4.23
SNX3-203ENST00000368979 CC2D2AQ9P2K1 1620 aa41.47■■■■■ 4.23
SNX3-203ENST00000368979 HMGXB3Q12766 1538 aa41.46■■■■■ 4.23
SNX3-203ENST00000368979 CCDC88BA6NC98 1476 aa41.27■■■■■ 4.2
SNX3-203ENST00000368979 CHIC1Q5VXU3 224 aa40.73■■■■■ 4.11
SNX3-203ENST00000368979 CFTRP13569 1480 aa40.48■■■■■ 4.07
SNX3-203ENST00000368979 CADPSQ9ULU8 1353 aa40.36■■■■■ 4.05
SNX3-203ENST00000368979 PRDM2Q13029 1718 aa40.33■■■■■ 4.05
SNX3-203ENST00000368979 ABCC8Q09428 1581 aa40.28■■■■■ 4.04
SNX3-203ENST00000368979 TRIM41Q8WV44 630 aa40.16■■■■■ 4.02
SNX3-203ENST00000368979 LAMC3Q9Y6N6 1575 aa40.16■■■■■ 4.02
SNX3-203ENST00000368979 NESP48681 1621 aa40.09■■■■■ 4.01
SNX3-203ENST00000368979 WRNQ14191 1432 aaPredicted RBP eCLIP40.07■■■■■ 4.01
SNX3-203ENST00000368979 SYNJ1O43426 1573 aa39.96■■■■□ 3.99
SNX3-203ENST00000368979 FANCD2Q9BXW9 1451 aa39.92■■■■□ 3.98
SNX3-203ENST00000368979 TOP2BQ02880 1626 aa39.84■■■■□ 3.97
SNX3-203ENST00000368979 BIVM-ERCC5R4GMW8 1640 aa39.84■■■■□ 3.97
SNX3-203ENST00000368979 CUX1P39880 1505 aa39.79■■■■□ 3.96
SNX3-203ENST00000368979 PDS5BQ9NTI5 1447 aa39.78■■■■□ 3.96
SNX3-203ENST00000368979 CEP164Q9UPV0 1460 aa39.71■■■■□ 3.95
SNX3-203ENST00000368979 KIF21AQ7Z4S6 1674 aa39.67■■■■□ 3.94
SNX3-203ENST00000368979 DNMBPQ6XZF7 1577 aa39.56■■■■□ 3.92
SNX3-203ENST00000368979 TOPBP1Q92547 1522 aa39.48■■■■□ 3.91
SNX3-203ENST00000368979 URB2Q14146 1524 aaKnown RBP39.46■■■■□ 3.91
SNX3-203ENST00000368979 SOGA1O94964 1423 aa39.44■■■■□ 3.9
SNX3-203ENST00000368979 FGD5Q6ZNL6 1462 aa39.39■■■■□ 3.9
SNX3-203ENST00000368979 EEA1Q15075 1411 aa39.37■■■■□ 3.89
SNX3-203ENST00000368979 FAM9AQ8IZU1 332 aaPredicted RBP39.35■■■■□ 3.89
SNX3-203ENST00000368979 MRC2Q9UBG0 1479 aa39.33■■■■□ 3.89
SNX3-203ENST00000368979 RUSC2Q8N2Y8 1516 aa39.31■■■■□ 3.88
SNX3-203ENST00000368979 POLA1P09884 1462 aaPredicted RBP39.26■■■■□ 3.87
SNX3-203ENST00000368979 ERCC6Q03468 1493 aa39.26■■■■□ 3.87
SNX3-203ENST00000368979 WDR62O43379 1518 aa39.18■■■■□ 3.86
SNX3-203ENST00000368979 THOC2Q8NI27 1593 aaKnown RBP39.15■■■■□ 3.86
SNX3-203ENST00000368979 LOC105371045A0A1W2PR82 267 aa39.09■■■■□ 3.85
SNX3-203ENST00000368979 KIF27Q86VH2 1401 aa39.08■■■■□ 3.85
SNX3-203ENST00000368979 CSRNP3Q8WYN3 585 aa39.08■■■■□ 3.85
SNX3-203ENST00000368979 RAD54L2Q9Y4B4 1467 aa39.08■■■■□ 3.85
SNX3-203ENST00000368979 ABCA10Q8WWZ4 1543 aa39.07■■■■□ 3.84
SNX3-203ENST00000368979 WDR97A6NE52 1622 aa39.04■■■■□ 3.84
SNX3-203ENST00000368979 CUX2O14529 1486 aa39.04■■■■□ 3.84
SNX3-203ENST00000368979 TARBP1Q13395 1621 aaKnown RBP38.95■■■■□ 3.83
SNX3-203ENST00000368979 KIF21BO75037 1637 aa38.91■■■■□ 3.82
SNX3-203ENST00000368979 ABCA5Q8WWZ7 1642 aa38.81■■■■□ 3.8
SNX3-203ENST00000368979 IFT140Q96RY7 1462 aa38.8■■■■□ 3.8
SNX3-203ENST00000368979 GOLGA3Q08378 1498 aa38.79■■■■□ 3.8
SNX3-203ENST00000368979 PRXQ9BXM0 1461 aa38.78■■■■□ 3.8
SNX3-203ENST00000368979 EHMT2Q96KQ7 1210 aa38.75■■■■□ 3.79
SNX3-203ENST00000368979 IGF1RP08069 1367 aa38.75■■■■□ 3.79
SNX3-203ENST00000368979 ERICH3Q5RHP9 1530 aa38.71■■■■□ 3.79
SNX3-203ENST00000368979 TDRD9Q8NDG6 1382 aaKnown RBP38.69■■■■□ 3.78
SNX3-203ENST00000368979 RAPGEF2Q9Y4G8 1499 aa38.67■■■■□ 3.78
SNX3-203ENST00000368979 GAPVD1Q14C86 1478 aa38.66■■■■□ 3.78
SNX3-203ENST00000368979 TNIKQ9UKE5 1360 aa38.58■■■■□ 3.77
SNX3-203ENST00000368979 CUL7Q14999 1698 aa38.58■■■■□ 3.77
SNX3-203ENST00000368979 ZNF608Q9ULD9 1512 aaPredicted RBP38.56■■■■□ 3.76
SNX3-203ENST00000368979 PBRM1Q86U86 1689 aa38.55■■■■□ 3.76
SNX3-203ENST00000368979 CARMIL1Q5VZK9 1371 aa38.54■■■■□ 3.76
SNX3-203ENST00000368979 AQRO60306 1485 aaKnown RBP eCLIP38.52■■■■□ 3.76
SNX3-203ENST00000368979 EIF4G3O43432 1585 aaKnown RBP38.49■■■■□ 3.75
SNX3-203ENST00000368979 UBTFP17480 764 aaKnown RBP38.48■■■■□ 3.75
SNX3-203ENST00000368979 GRIN2BQ13224 1484 aa38.43■■■■□ 3.74
SNX3-203ENST00000368979 CEP162Q5TB80 1403 aa38.35■■■■□ 3.73
SNX3-203ENST00000368979 ADAMTS12P58397 1594 aa38.32■■■■□ 3.73
SNX3-203ENST00000368979 FHAD1B1AJZ9 1412 aa38.26■■■■□ 3.71
SNX3-203ENST00000368979 SNAPC4Q5SXM2 1469 aa38.21■■■■□ 3.71
SNX3-203ENST00000368979 MAGI1Q96QZ7 1491 aaPredicted RBP38.17■■■■□ 3.7
SNX3-203ENST00000368979 DNAJC5Q9H3Z4 198 aa38.13■■■■□ 3.69
SNX3-203ENST00000368979 CLIP1P30622 1438 aa38.11■■■■□ 3.69
SNX3-203ENST00000368979 CTTNBP2Q8WZ74 1663 aa38.11■■■■□ 3.69
SNX3-203ENST00000368979 SYNJ2O15056 1496 aa38.01■■■■□ 3.67
SNX3-203ENST00000368979 GRIN2AQ12879 1464 aa37.97■■■■□ 3.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms