RNA–Protein interactions for RNA: ENST00000357568.7

CAPN3-205, Transcript of calpain 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CAPN3, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-205ENST00000357568 NISCHQ9Y2I1 1504 aa22.49■■□□□ 1.19
CAPN3-205ENST00000357568 CCDC180Q9P1Z9 1646 aa19.96■□□□□ 0.79
CAPN3-205ENST00000357568 ABCC9O60706 1549 aa19.08■□□□□ 0.64
CAPN3-205ENST00000357568 ZCCHC6Q5VYS8 1495 aaKnown RBP18.8■□□□□ 0.6
CAPN3-205ENST00000357568 DCAF1Q9Y4B6 1507 aa18.71■□□□□ 0.58
CAPN3-205ENST00000357568 MYO15BQ96JP2 1530 aa18.69■□□□□ 0.58
CAPN3-205ENST00000357568 NACADO15069 1562 aa18.66■□□□□ 0.58
CAPN3-205ENST00000357568 RB1CC1Q8TDY2 1594 aa18.59■□□□□ 0.57
CAPN3-205ENST00000357568 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
CAPN3-205ENST00000357568 UNC13AQ9UPW8 1703 aa18.16■□□□□ 0.5
CAPN3-205ENST00000357568 SCRIBQ14160 1630 aa18.1■□□□□ 0.49
CAPN3-205ENST00000357568 CHIC1Q5VXU3 224 aa18.02■□□□□ 0.47
CAPN3-205ENST00000357568 BICRAQ9NZM4 1560 aa17.99■□□□□ 0.47
CAPN3-205ENST00000357568 SHROOM4Q9ULL8 1493 aa17.94■□□□□ 0.46
CAPN3-205ENST00000357568 HRCP23327 699 aa17.85■□□□□ 0.45
CAPN3-205ENST00000357568 PABPN1Q86U42 306 aaKnown RBP eCLIP17.82■□□□□ 0.44
CAPN3-205ENST00000357568 AEBP2Q6ZN18 517 aaPredicted RBP17.67■□□□□ 0.42
CAPN3-205ENST00000357568 SUPT5HO00267 1087 aaKnown RBP17.58■□□□□ 0.4
CAPN3-205ENST00000357568 EIF4G1Q04637 1599 aaKnown RBP17.48■□□□□ 0.39
CAPN3-205ENST00000357568 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
CAPN3-205ENST00000357568 CECR2Q9BXF3 1484 aa17.41■□□□□ 0.38
CAPN3-205ENST00000357568 SMARCA4P51532 1647 aa17.4■□□□□ 0.38
CAPN3-205ENST00000357568 CC2D2AQ9P2K1 1620 aa17.33■□□□□ 0.37
CAPN3-205ENST00000357568 PCGF6Q9BYE7 350 aa17.31■□□□□ 0.36
CAPN3-205ENST00000357568 MROH2BQ7Z745 1585 aa17.29■□□□□ 0.36
CAPN3-205ENST00000357568 PEG3Q9GZU2 1588 aa17.27■□□□□ 0.36
CAPN3-205ENST00000357568 SMARCA2P51531 1590 aa17.25■□□□□ 0.35
CAPN3-205ENST00000357568 PELP1Q8IZL8 1130 aaKnown RBP17.23■□□□□ 0.35
CAPN3-205ENST00000357568 ATAD2BQ9ULI0 1458 aa17.21■□□□□ 0.34
CAPN3-205ENST00000357568 RSF1Q96T23 1441 aaPredicted RBP17.2■□□□□ 0.34
CAPN3-205ENST00000357568 DNAJC5BQ9UF47 199 aa17.2■□□□□ 0.34
CAPN3-205ENST00000357568 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
CAPN3-205ENST00000357568 HMGXB3Q12766 1538 aa17.16■□□□□ 0.34
CAPN3-205ENST00000357568 WIZO95785 1651 aa17.12■□□□□ 0.33
CAPN3-205ENST00000357568 PPARGC1BQ86YN6 1023 aaKnown RBP17.11■□□□□ 0.33
CAPN3-205ENST00000357568 TRIM26Q12899 539 aaPredicted RBP17.08■□□□□ 0.32
CAPN3-205ENST00000357568 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
CAPN3-205ENST00000357568 ZEB1P37275 1124 aaPredicted RBP17.06■□□□□ 0.32
CAPN3-205ENST00000357568 TOP2AP11388 1531 aaKnown RBP17.02■□□□□ 0.31
CAPN3-205ENST00000357568 LOC105371045A0A1W2PR82 267 aa16.83■□□□□ 0.28
CAPN3-205ENST00000357568 CCDC88BA6NC98 1476 aa16.76■□□□□ 0.27
CAPN3-205ENST00000357568 LAMC3Q9Y6N6 1575 aa16.71■□□□□ 0.27
CAPN3-205ENST00000357568 CADPSQ9ULU8 1353 aa16.67■□□□□ 0.26
CAPN3-205ENST00000357568 CFTRP13569 1480 aa16.65■□□□□ 0.26
CAPN3-205ENST00000357568 PRDM2Q13029 1718 aa16.64■□□□□ 0.25
CAPN3-205ENST00000357568 SCAF1Q9H7N4 1312 aaKnown RBP16.64■□□□□ 0.25
CAPN3-205ENST00000357568 MYT1Q01538 1121 aa16.63■□□□□ 0.25
CAPN3-205ENST00000357568 NESP48681 1621 aa16.59■□□□□ 0.25
CAPN3-205ENST00000357568 PDS5BQ9NTI5 1447 aa16.55■□□□□ 0.24
CAPN3-205ENST00000357568 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
CAPN3-205ENST00000357568 KIF21AQ7Z4S6 1674 aa16.48■□□□□ 0.23
CAPN3-205ENST00000357568 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
CAPN3-205ENST00000357568 ERCC6Q03468 1493 aa16.45■□□□□ 0.22
CAPN3-205ENST00000357568 CEP164Q9UPV0 1460 aa16.44■□□□□ 0.22
CAPN3-205ENST00000357568 PHF23Q9BUL5 403 aaPredicted RBP16.42■□□□□ 0.22
CAPN3-205ENST00000357568 ACIN1Q9UKV3 1341 aaKnown RBP16.42■□□□□ 0.22
CAPN3-205ENST00000357568 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
CAPN3-205ENST00000357568 MRC2Q9UBG0 1479 aa16.36■□□□□ 0.21
CAPN3-205ENST00000357568 ABCC8Q09428 1581 aa16.33■□□□□ 0.21
CAPN3-205ENST00000357568 WDR62O43379 1518 aa16.32■□□□□ 0.2
CAPN3-205ENST00000357568 CENPBP07199 599 aaPredicted RBP16.3■□□□□ 0.2
CAPN3-205ENST00000357568 DNMBPQ6XZF7 1577 aa16.29■□□□□ 0.2
CAPN3-205ENST00000357568 URB2Q14146 1524 aaKnown RBP16.28■□□□□ 0.2
CAPN3-205ENST00000357568 CUX2O14529 1486 aa16.26■□□□□ 0.19
CAPN3-205ENST00000357568 WRNQ14191 1432 aaPredicted RBP eCLIP16.25■□□□□ 0.19
CAPN3-205ENST00000357568 TOPBP1Q92547 1522 aa16.25■□□□□ 0.19
CAPN3-205ENST00000357568 NEUROD1Q13562 356 aa16.23■□□□□ 0.19
CAPN3-205ENST00000357568 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
CAPN3-205ENST00000357568 CUX1P39880 1505 aa16.22■□□□□ 0.19
CAPN3-205ENST00000357568 TOP2BQ02880 1626 aa16.2■□□□□ 0.18
CAPN3-205ENST00000357568 CCER1Q8TC90 406 aaPredicted RBP16.16■□□□□ 0.18
CAPN3-205ENST00000357568 SYNJ1O43426 1573 aa16.16■□□□□ 0.18
CAPN3-205ENST00000357568 DIEXFQ68CQ4 756 aaKnown RBP16.16■□□□□ 0.18
CAPN3-205ENST00000357568 FAM9AQ8IZU1 332 aaPredicted RBP16.15■□□□□ 0.18
CAPN3-205ENST00000357568 GTF3C3Q9Y5Q9 886 aa16.12■□□□□ 0.17
CAPN3-205ENST00000357568 POLA1P09884 1462 aaPredicted RBP16.11■□□□□ 0.17
CAPN3-205ENST00000357568 FGD5Q6ZNL6 1462 aa16.11■□□□□ 0.17
CAPN3-205ENST00000357568 IFT140Q96RY7 1462 aa16.11■□□□□ 0.17
CAPN3-205ENST00000357568 EHMT2Q96KQ7 1210 aa16.08■□□□□ 0.16
CAPN3-205ENST00000357568 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.08■□□□□ 0.16
CAPN3-205ENST00000357568 TARBP1Q13395 1621 aaKnown RBP16.07■□□□□ 0.16
CAPN3-205ENST00000357568 WDR97A6NE52 1622 aa16.06■□□□□ 0.16
CAPN3-205ENST00000357568 SOGA1O94964 1423 aa16.05■□□□□ 0.16
CAPN3-205ENST00000357568 ABCA10Q8WWZ4 1543 aa16.02■□□□□ 0.15
CAPN3-205ENST00000357568 EEA1Q15075 1411 aa16.01■□□□□ 0.15
CAPN3-205ENST00000357568 RAD54L2Q9Y4B4 1467 aa16■□□□□ 0.15
CAPN3-205ENST00000357568 TNIKQ9UKE5 1360 aa15.99■□□□□ 0.15
CAPN3-205ENST00000357568 ZNF316A6NFI3 1004 aaPredicted RBP15.98■□□□□ 0.15
CAPN3-205ENST00000357568 CEP162Q5TB80 1403 aa15.96■□□□□ 0.15
CAPN3-205ENST00000357568 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
CAPN3-205ENST00000357568 EIF4G3O43432 1585 aaKnown RBP15.93■□□□□ 0.14
CAPN3-205ENST00000357568 ZNF608Q9ULD9 1512 aaPredicted RBP15.92■□□□□ 0.14
CAPN3-205ENST00000357568 CLSPNQ9HAW4 1339 aa15.9■□□□□ 0.14
CAPN3-205ENST00000357568 GAPVD1Q14C86 1478 aa15.88■□□□□ 0.13
CAPN3-205ENST00000357568 PBRM1Q86U86 1689 aa15.88■□□□□ 0.13
CAPN3-205ENST00000357568 KIF27Q86VH2 1401 aa15.87■□□□□ 0.13
CAPN3-205ENST00000357568 TDRD9Q8NDG6 1382 aaKnown RBP15.86■□□□□ 0.13
CAPN3-205ENST00000357568 AQRO60306 1485 aaKnown RBP eCLIP15.86■□□□□ 0.13
CAPN3-205ENST00000357568 GRIN2BQ13224 1484 aa15.86■□□□□ 0.13
CAPN3-205ENST00000357568 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms