RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 NISCHQ9Y2I1 1504 aa22.79■■□□□ 1.24
SYNE1-203ENST00000354674 CCDC180Q9P1Z9 1646 aa19.99■□□□□ 0.79
SYNE1-203ENST00000354674 ZCCHC6Q5VYS8 1495 aaKnown RBP19.13■□□□□ 0.65
SYNE1-203ENST00000354674 DCAF1Q9Y4B6 1507 aa18.92■□□□□ 0.62
SYNE1-203ENST00000354674 ABCC9O60706 1549 aa18.89■□□□□ 0.61
SYNE1-203ENST00000354674 MYO15BQ96JP2 1530 aa18.77■□□□□ 0.6
SYNE1-203ENST00000354674 DCAF8L2P0C7V8 631 aa18.65■□□□□ 0.58
SYNE1-203ENST00000354674 NACADO15069 1562 aa18.63■□□□□ 0.57
SYNE1-203ENST00000354674 RB1CC1Q8TDY2 1594 aa18.48■□□□□ 0.55
SYNE1-203ENST00000354674 SHROOM4Q9ULL8 1493 aa18.32■□□□□ 0.52
SYNE1-203ENST00000354674 SCRIBQ14160 1630 aa18.26■□□□□ 0.51
SYNE1-203ENST00000354674 UNC13AQ9UPW8 1703 aa18.12■□□□□ 0.49
SYNE1-203ENST00000354674 BICRAQ9NZM4 1560 aa17.95■□□□□ 0.46
SYNE1-203ENST00000354674 PABPN1Q86U42 306 aaKnown RBP eCLIP17.75■□□□□ 0.43
SYNE1-203ENST00000354674 CECR2Q9BXF3 1484 aa17.68■□□□□ 0.42
SYNE1-203ENST00000354674 BAZ1AQ9NRL2 1556 aaPredicted RBP17.61■□□□□ 0.41
SYNE1-203ENST00000354674 RSF1Q96T23 1441 aaPredicted RBP17.61■□□□□ 0.41
SYNE1-203ENST00000354674 MROH2BQ7Z745 1585 aa17.58■□□□□ 0.4
SYNE1-203ENST00000354674 SMARCA4P51532 1647 aa17.55■□□□□ 0.4
SYNE1-203ENST00000354674 SUPT5HO00267 1087 aaKnown RBP17.54■□□□□ 0.4
SYNE1-203ENST00000354674 WIZO95785 1651 aa17.42■□□□□ 0.38
SYNE1-203ENST00000354674 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
SYNE1-203ENST00000354674 EIF4G1Q04637 1599 aaKnown RBP17.39■□□□□ 0.37
SYNE1-203ENST00000354674 ATAD2BQ9ULI0 1458 aa17.29■□□□□ 0.36
SYNE1-203ENST00000354674 SMARCA2P51531 1590 aa17.28■□□□□ 0.36
SYNE1-203ENST00000354674 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.35
SYNE1-203ENST00000354674 NCAPD3P42695 1498 aa17.19■□□□□ 0.34
SYNE1-203ENST00000354674 HMGXB3Q12766 1538 aa17.17■□□□□ 0.34
SYNE1-203ENST00000354674 CC2D2AQ9P2K1 1620 aa17.16■□□□□ 0.34
SYNE1-203ENST00000354674 BAZ1BQ9UIG0 1483 aaKnown RBP17.15■□□□□ 0.34
SYNE1-203ENST00000354674 CCDC88BA6NC98 1476 aa17.06■□□□□ 0.32
SYNE1-203ENST00000354674 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
SYNE1-203ENST00000354674 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
SYNE1-203ENST00000354674 PPARGC1BQ86YN6 1023 aaKnown RBP16.77■□□□□ 0.27
SYNE1-203ENST00000354674 CFTRP13569 1480 aa16.76■□□□□ 0.27
SYNE1-203ENST00000354674 CADPSQ9ULU8 1353 aa16.7■□□□□ 0.26
SYNE1-203ENST00000354674 PRDM2Q13029 1718 aa16.69■□□□□ 0.26
SYNE1-203ENST00000354674 PELP1Q8IZL8 1130 aaKnown RBP16.63■□□□□ 0.25
SYNE1-203ENST00000354674 LAMC3Q9Y6N6 1575 aa16.62■□□□□ 0.25
SYNE1-203ENST00000354674 ABCC8Q09428 1581 aa16.62■□□□□ 0.25
SYNE1-203ENST00000354674 HRCP23327 699 aa16.61■□□□□ 0.25
SYNE1-203ENST00000354674 NESP48681 1621 aa16.56■□□□□ 0.24
SYNE1-203ENST00000354674 WRNQ14191 1432 aaPredicted RBP eCLIP16.55■□□□□ 0.24
SYNE1-203ENST00000354674 TRIM41Q8WV44 630 aa16.55■□□□□ 0.24
SYNE1-203ENST00000354674 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
SYNE1-203ENST00000354674 FANCD2Q9BXW9 1451 aa16.51■□□□□ 0.23
SYNE1-203ENST00000354674 BIVM-ERCC5R4GMW8 1640 aa16.49■□□□□ 0.23
SYNE1-203ENST00000354674 TOP2BQ02880 1626 aa16.48■□□□□ 0.23
SYNE1-203ENST00000354674 PDS5BQ9NTI5 1447 aa16.46■□□□□ 0.23
SYNE1-203ENST00000354674 CUX1P39880 1505 aa16.45■□□□□ 0.22
SYNE1-203ENST00000354674 CEP164Q9UPV0 1460 aa16.41■□□□□ 0.22
SYNE1-203ENST00000354674 KIF21AQ7Z4S6 1674 aa16.4■□□□□ 0.22
SYNE1-203ENST00000354674 PCGF6Q9BYE7 350 aa16.38■□□□□ 0.21
SYNE1-203ENST00000354674 DNMBPQ6XZF7 1577 aa16.36■□□□□ 0.21
SYNE1-203ENST00000354674 URB2Q14146 1524 aaKnown RBP16.33■□□□□ 0.2
SYNE1-203ENST00000354674 TOPBP1Q92547 1522 aa16.33■□□□□ 0.2
SYNE1-203ENST00000354674 SOGA1O94964 1423 aa16.28■□□□□ 0.2
SYNE1-203ENST00000354674 FGD5Q6ZNL6 1462 aa16.27■□□□□ 0.2
SYNE1-203ENST00000354674 EEA1Q15075 1411 aa16.27■□□□□ 0.2
SYNE1-203ENST00000354674 MRC2Q9UBG0 1479 aa16.27■□□□□ 0.2
SYNE1-203ENST00000354674 SCAF1Q9H7N4 1312 aaKnown RBP16.26■□□□□ 0.19
SYNE1-203ENST00000354674 RUSC2Q8N2Y8 1516 aa16.23■□□□□ 0.19
SYNE1-203ENST00000354674 POLA1P09884 1462 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-203ENST00000354674 WDR62O43379 1518 aa16.22■□□□□ 0.19
SYNE1-203ENST00000354674 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.18
SYNE1-203ENST00000354674 ERCC6Q03468 1493 aa16.2■□□□□ 0.18
SYNE1-203ENST00000354674 ABCA10Q8WWZ4 1543 aa16.17■□□□□ 0.18
SYNE1-203ENST00000354674 FAM9AQ8IZU1 332 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-203ENST00000354674 WDR97A6NE52 1622 aa16.16■□□□□ 0.18
SYNE1-203ENST00000354674 RAD54L2Q9Y4B4 1467 aa16.14■□□□□ 0.18
SYNE1-203ENST00000354674 KIF27Q86VH2 1401 aa16.14■□□□□ 0.17
SYNE1-203ENST00000354674 CSRNP3Q8WYN3 585 aa16.14■□□□□ 0.17
SYNE1-203ENST00000354674 TARBP1Q13395 1621 aaKnown RBP16.13■□□□□ 0.17
SYNE1-203ENST00000354674 CUX2O14529 1486 aa16.11■□□□□ 0.17
SYNE1-203ENST00000354674 LOC105371045A0A1W2PR82 267 aa16.1■□□□□ 0.17
SYNE1-203ENST00000354674 KIF21BO75037 1637 aa16.08■□□□□ 0.16
SYNE1-203ENST00000354674 ABCA5Q8WWZ7 1642 aa16.06■□□□□ 0.16
SYNE1-203ENST00000354674 IFT140Q96RY7 1462 aa16.05■□□□□ 0.16
SYNE1-203ENST00000354674 PRXQ9BXM0 1461 aa16.04■□□□□ 0.16
SYNE1-203ENST00000354674 IGF1RP08069 1367 aa16.04■□□□□ 0.16
SYNE1-203ENST00000354674 MYT1Q01538 1121 aa16.01■□□□□ 0.15
SYNE1-203ENST00000354674 ERICH3Q5RHP9 1530 aa16■□□□□ 0.15
SYNE1-203ENST00000354674 GOLGA3Q08378 1498 aa16■□□□□ 0.15
SYNE1-203ENST00000354674 GAPVD1Q14C86 1478 aa15.98■□□□□ 0.15
SYNE1-203ENST00000354674 TDRD9Q8NDG6 1382 aaKnown RBP15.97■□□□□ 0.15
SYNE1-203ENST00000354674 RAPGEF2Q9Y4G8 1499 aa15.96■□□□□ 0.15
SYNE1-203ENST00000354674 CUL7Q14999 1698 aa15.95■□□□□ 0.14
SYNE1-203ENST00000354674 TNIKQ9UKE5 1360 aa15.94■□□□□ 0.14
SYNE1-203ENST00000354674 ZNF608Q9ULD9 1512 aaPredicted RBP15.94■□□□□ 0.14
SYNE1-203ENST00000354674 PBRM1Q86U86 1689 aa15.93■□□□□ 0.14
SYNE1-203ENST00000354674 CARMIL1Q5VZK9 1371 aa15.93■□□□□ 0.14
SYNE1-203ENST00000354674 AQRO60306 1485 aaKnown RBP eCLIP15.92■□□□□ 0.14
SYNE1-203ENST00000354674 EIF4G3O43432 1585 aaKnown RBP15.91■□□□□ 0.14
SYNE1-203ENST00000354674 GRIN2BQ13224 1484 aa15.89■□□□□ 0.13
SYNE1-203ENST00000354674 EHMT2Q96KQ7 1210 aa15.88■□□□□ 0.13
SYNE1-203ENST00000354674 ADAMTS12P58397 1594 aa15.84■□□□□ 0.13
SYNE1-203ENST00000354674 UBTFP17480 764 aaKnown RBP15.84■□□□□ 0.13
SYNE1-203ENST00000354674 FHAD1B1AJZ9 1412 aa15.82■□□□□ 0.12
SYNE1-203ENST00000354674 CEP162Q5TB80 1403 aa15.81■□□□□ 0.12
SYNE1-203ENST00000354674 MAGI1Q96QZ7 1491 aaPredicted RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms