RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 AEBP2Q6ZN18 517 aaPredicted RBP29.55■■■□□ 2.32
SNCA-202ENST00000345009 CHIC1Q5VXU3 224 aa28.61■■■□□ 2.17
SNCA-202ENST00000345009 NISCHQ9Y2I1 1504 aa28.03■■■□□ 2.08
SNCA-202ENST00000345009 SENP3Q9H4L4 574 aaPredicted RBP25.18■■□□□ 1.62
SNCA-202ENST00000345009 PHF23Q9BUL5 403 aaPredicted RBP25.1■■□□□ 1.61
SNCA-202ENST00000345009 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
SNCA-202ENST00000345009 ABCC9O60706 1549 aa24.1■■□□□ 1.45
SNCA-202ENST00000345009 DCAF8L2P0C7V8 631 aa23.52■■□□□ 1.36
SNCA-202ENST00000345009 FOXD1Q16676 465 aa23.39■■□□□ 1.33
SNCA-202ENST00000345009 ZCCHC6Q5VYS8 1495 aaKnown RBP23.36■■□□□ 1.33
SNCA-202ENST00000345009 NACADO15069 1562 aa23.33■■□□□ 1.33
SNCA-202ENST00000345009 RB1CC1Q8TDY2 1594 aa23.3■■□□□ 1.32
SNCA-202ENST00000345009 MYO15BQ96JP2 1530 aa23.26■■□□□ 1.31
SNCA-202ENST00000345009 DCAF1Q9Y4B6 1507 aa23.22■■□□□ 1.31
SNCA-202ENST00000345009 PLPPR3Q6T4P5 718 aa23.16■■□□□ 1.3
SNCA-202ENST00000345009 SCRIBQ14160 1630 aa22.63■■□□□ 1.21
SNCA-202ENST00000345009 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.21
SNCA-202ENST00000345009 UNC13AQ9UPW8 1703 aa22.61■■□□□ 1.21
SNCA-202ENST00000345009 BICRAQ9NZM4 1560 aa22.47■■□□□ 1.19
SNCA-202ENST00000345009 SHROOM4Q9ULL8 1493 aa22.4■■□□□ 1.18
SNCA-202ENST00000345009 ADRA2BP18089 450 aa22.3■■□□□ 1.16
SNCA-202ENST00000345009 PPP6R1Q9UPN7 881 aa22.27■■□□□ 1.16
SNCA-202ENST00000345009 PIAS4Q8N2W9 510 aaPredicted RBP22.06■■□□□ 1.12
SNCA-202ENST00000345009 POTEDQ86YR6 584 aa22■■□□□ 1.11
SNCA-202ENST00000345009 EIF4G1Q04637 1599 aaKnown RBP21.92■■□□□ 1.1
SNCA-202ENST00000345009 DNAJC5BQ9UF47 199 aa21.92■■□□□ 1.1
SNCA-202ENST00000345009 CECR2Q9BXF3 1484 aa21.78■■□□□ 1.08
SNCA-202ENST00000345009 CC2D2AQ9P2K1 1620 aa21.77■■□□□ 1.08
SNCA-202ENST00000345009 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
SNCA-202ENST00000345009 MSH5O43196 834 aa21.7■■□□□ 1.06
SNCA-202ENST00000345009 SMARCA4P51532 1647 aa21.67■■□□□ 1.06
SNCA-202ENST00000345009 MROH2BQ7Z745 1585 aa21.57■■□□□ 1.04
SNCA-202ENST00000345009 SMARCA2P51531 1590 aa21.57■■□□□ 1.04
SNCA-202ENST00000345009 ATAD2BQ9ULI0 1458 aa21.55■■□□□ 1.04
SNCA-202ENST00000345009 NCAPD3P42695 1498 aa21.53■■□□□ 1.04
SNCA-202ENST00000345009 PEG3Q9GZU2 1588 aa21.47■■□□□ 1.03
SNCA-202ENST00000345009 RSF1Q96T23 1441 aaPredicted RBP21.46■■□□□ 1.03
SNCA-202ENST00000345009 BAZ1BQ9UIG0 1483 aaKnown RBP21.41■■□□□ 1.02
SNCA-202ENST00000345009 HMGXB3Q12766 1538 aa21.4■■□□□ 1.02
SNCA-202ENST00000345009 WIZO95785 1651 aa21.32■■□□□ 1
SNCA-202ENST00000345009 SUPT5HO00267 1087 aaKnown RBP21.18■□□□□ 0.98
SNCA-202ENST00000345009 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
SNCA-202ENST00000345009 CADPSQ9ULU8 1353 aa20.96■□□□□ 0.95
SNCA-202ENST00000345009 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
SNCA-202ENST00000345009 LAMC3Q9Y6N6 1575 aa20.91■□□□□ 0.94
SNCA-202ENST00000345009 NESP48681 1621 aa20.87■□□□□ 0.93
SNCA-202ENST00000345009 PDS5BQ9NTI5 1447 aa20.86■□□□□ 0.93
SNCA-202ENST00000345009 ERCC6Q03468 1493 aa20.83■□□□□ 0.93
SNCA-202ENST00000345009 CFTRP13569 1480 aa20.82■□□□□ 0.92
SNCA-202ENST00000345009 FANCD2Q9BXW9 1451 aa20.68■□□□□ 0.9
SNCA-202ENST00000345009 CEP164Q9UPV0 1460 aa20.63■□□□□ 0.89
SNCA-202ENST00000345009 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.89
SNCA-202ENST00000345009 PRDM2Q13029 1718 aa20.57■□□□□ 0.88
SNCA-202ENST00000345009 MRC2Q9UBG0 1479 aa20.55■□□□□ 0.88
SNCA-202ENST00000345009 CUX2O14529 1486 aa20.5■□□□□ 0.87
SNCA-202ENST00000345009 THOC2Q8NI27 1593 aaKnown RBP20.46■□□□□ 0.87
SNCA-202ENST00000345009 ABCC8Q09428 1581 aa20.46■□□□□ 0.87
SNCA-202ENST00000345009 SCAF1Q9H7N4 1312 aaKnown RBP20.45■□□□□ 0.86
SNCA-202ENST00000345009 WDR62O43379 1518 aa20.43■□□□□ 0.86
SNCA-202ENST00000345009 URB2Q14146 1524 aaKnown RBP20.39■□□□□ 0.85
SNCA-202ENST00000345009 PPP4R3CPQ6ZMV5 832 aa20.38■□□□□ 0.85
SNCA-202ENST00000345009 TOPBP1Q92547 1522 aa20.33■□□□□ 0.85
SNCA-202ENST00000345009 DNMBPQ6XZF7 1577 aa20.33■□□□□ 0.84
SNCA-202ENST00000345009 MAPK8IP2Q13387 824 aaPredicted RBP20.31■□□□□ 0.84
SNCA-202ENST00000345009 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.83
SNCA-202ENST00000345009 CUX1P39880 1505 aa20.22■□□□□ 0.83
SNCA-202ENST00000345009 IFT140Q96RY7 1462 aa20.21■□□□□ 0.83
SNCA-202ENST00000345009 SOGA1O94964 1423 aa20.18■□□□□ 0.82
SNCA-202ENST00000345009 POLA1P09884 1462 aaPredicted RBP20.18■□□□□ 0.82
SNCA-202ENST00000345009 FGD5Q6ZNL6 1462 aa20.16■□□□□ 0.82
SNCA-202ENST00000345009 TOP2BQ02880 1626 aa20.13■□□□□ 0.81
SNCA-202ENST00000345009 SYNJ1O43426 1573 aa20.08■□□□□ 0.81
SNCA-202ENST00000345009 RAD54L2Q9Y4B4 1467 aa20.08■□□□□ 0.81
SNCA-202ENST00000345009 BIVM-ERCC5R4GMW8 1640 aa20.08■□□□□ 0.8
SNCA-202ENST00000345009 TRIM41Q8WV44 630 aa20.04■□□□□ 0.8
SNCA-202ENST00000345009 TARBP1Q13395 1621 aaKnown RBP20.04■□□□□ 0.8
SNCA-202ENST00000345009 ZNF608Q9ULD9 1512 aaPredicted RBP20.02■□□□□ 0.8
SNCA-202ENST00000345009 DMRT2Q9Y5R5 561 aa20.02■□□□□ 0.8
SNCA-202ENST00000345009 TDRD9Q8NDG6 1382 aaKnown RBP20.02■□□□□ 0.8
SNCA-202ENST00000345009 ABCA10Q8WWZ4 1543 aa19.99■□□□□ 0.79
SNCA-202ENST00000345009 AQRO60306 1485 aaKnown RBP eCLIP19.99■□□□□ 0.79
SNCA-202ENST00000345009 WDR97A6NE52 1622 aa19.97■□□□□ 0.79
SNCA-202ENST00000345009 GAPVD1Q14C86 1478 aa19.92■□□□□ 0.78
SNCA-202ENST00000345009 EIF4G3O43432 1585 aaKnown RBP19.92■□□□□ 0.78
SNCA-202ENST00000345009 GRIN2BQ13224 1484 aa19.89■□□□□ 0.77
SNCA-202ENST00000345009 KIF27Q86VH2 1401 aa19.87■□□□□ 0.77
SNCA-202ENST00000345009 CNKSR2Q8WXI2 1034 aa19.86■□□□□ 0.77
SNCA-202ENST00000345009 FBLN2P98095 1184 aa19.83■□□□□ 0.77
SNCA-202ENST00000345009 CHMP7Q8WUX9 453 aaPredicted RBP19.82■□□□□ 0.76
SNCA-202ENST00000345009 ABCA5Q8WWZ7 1642 aa19.82■□□□□ 0.76
SNCA-202ENST00000345009 MAGI1Q96QZ7 1491 aaPredicted RBP19.81■□□□□ 0.76
SNCA-202ENST00000345009 NCBP3Q53F19 620 aaKnown RBP19.81■□□□□ 0.76
SNCA-202ENST00000345009 OSCARQ8IYS5 282 aa19.81■□□□□ 0.76
SNCA-202ENST00000345009 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
SNCA-202ENST00000345009 ERICH3Q5RHP9 1530 aa19.77■□□□□ 0.76
SNCA-202ENST00000345009 PBRM1Q86U86 1689 aa19.74■□□□□ 0.75
SNCA-202ENST00000345009 IGF1RP08069 1367 aa19.73■□□□□ 0.75
SNCA-202ENST00000345009 SYNJ2O15056 1496 aa19.73■□□□□ 0.75
SNCA-202ENST00000345009 FHAD1B1AJZ9 1412 aa19.72■□□□□ 0.75
SNCA-202ENST00000345009 DNAJC5Q9H3Z4 198 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms