RNA–Protein interactions for RNA: ENST00000344622.8

GDNF-202, Transcript of glial cell derived neurotrophic factor, humanhuman

TSL 1 (best) BASIC

Gene GDNF, Length 3,655 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDNF-202ENST00000344622 NISCHQ9Y2I1 1504 aa17.39■□□□□ 0.37
GDNF-202ENST00000344622 CCDC180Q9P1Z9 1646 aa15.17■□□□□ 0.02
GDNF-202ENST00000344622 ABCC9O60706 1549 aa14.67□□□□□ -0.06
GDNF-202ENST00000344622 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
GDNF-202ENST00000344622 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
GDNF-202ENST00000344622 DCAF1Q9Y4B6 1507 aa14.25□□□□□ -0.13
GDNF-202ENST00000344622 SHROOM4Q9ULL8 1493 aa14.17□□□□□ -0.14
GDNF-202ENST00000344622 UNC13AQ9UPW8 1703 aa14.14□□□□□ -0.15
GDNF-202ENST00000344622 NACADO15069 1562 aa14.12□□□□□ -0.15
GDNF-202ENST00000344622 MYO15BQ96JP2 1530 aa14.12□□□□□ -0.15
GDNF-202ENST00000344622 SCRIBQ14160 1630 aa14.09□□□□□ -0.15
GDNF-202ENST00000344622 RB1CC1Q8TDY2 1594 aa14.06□□□□□ -0.16
GDNF-202ENST00000344622 BICRAQ9NZM4 1560 aa13.92□□□□□ -0.18
GDNF-202ENST00000344622 PABPN1Q86U42 306 aaKnown RBP eCLIP13.83□□□□□ -0.2
GDNF-202ENST00000344622 CECR2Q9BXF3 1484 aa13.68□□□□□ -0.22
GDNF-202ENST00000344622 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
GDNF-202ENST00000344622 WIZO95785 1651 aa13.46□□□□□ -0.25
GDNF-202ENST00000344622 RSF1Q96T23 1441 aaPredicted RBP13.45□□□□□ -0.26
GDNF-202ENST00000344622 SMARCA4P51532 1647 aa13.44□□□□□ -0.26
GDNF-202ENST00000344622 SUPT5HO00267 1087 aaKnown RBP13.41□□□□□ -0.26
GDNF-202ENST00000344622 EIF4G1Q04637 1599 aaKnown RBP13.4□□□□□ -0.26
GDNF-202ENST00000344622 BAZ1AQ9NRL2 1556 aaPredicted RBP13.35□□□□□ -0.27
GDNF-202ENST00000344622 DNAJC5BQ9UF47 199 aa13.34□□□□□ -0.27
GDNF-202ENST00000344622 CC2D2AQ9P2K1 1620 aa13.29□□□□□ -0.28
GDNF-202ENST00000344622 PEG3Q9GZU2 1588 aa13.25□□□□□ -0.29
GDNF-202ENST00000344622 ATAD2BQ9ULI0 1458 aa13.24□□□□□ -0.29
GDNF-202ENST00000344622 TOP2AP11388 1531 aaKnown RBP13.12□□□□□ -0.31
GDNF-202ENST00000344622 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
GDNF-202ENST00000344622 NCAPD3P42695 1498 aa13.09□□□□□ -0.31
GDNF-202ENST00000344622 BAZ1BQ9UIG0 1483 aaKnown RBP13.07□□□□□ -0.32
GDNF-202ENST00000344622 CCDC88BA6NC98 1476 aa13.07□□□□□ -0.32
GDNF-202ENST00000344622 HMGXB3Q12766 1538 aa13.05□□□□□ -0.32
GDNF-202ENST00000344622 NESP48681 1621 aa12.93□□□□□ -0.34
GDNF-202ENST00000344622 ABCC8Q09428 1581 aa12.85□□□□□ -0.35
GDNF-202ENST00000344622 CFTRP13569 1480 aa12.79□□□□□ -0.36
GDNF-202ENST00000344622 KIF21AQ7Z4S6 1674 aa12.76□□□□□ -0.37
GDNF-202ENST00000344622 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
GDNF-202ENST00000344622 CHIC1Q5VXU3 224 aa12.74□□□□□ -0.37
GDNF-202ENST00000344622 CADPSQ9ULU8 1353 aa12.73□□□□□ -0.37
GDNF-202ENST00000344622 SYNJ1O43426 1573 aa12.71□□□□□ -0.38
GDNF-202ENST00000344622 LAMC3Q9Y6N6 1575 aa12.66□□□□□ -0.38
GDNF-202ENST00000344622 CUX1P39880 1505 aa12.64□□□□□ -0.39
GDNF-202ENST00000344622 FANCD2Q9BXW9 1451 aa12.63□□□□□ -0.39
GDNF-202ENST00000344622 URB2Q14146 1524 aaKnown RBP12.6□□□□□ -0.39
GDNF-202ENST00000344622 RUSC2Q8N2Y8 1516 aa12.58□□□□□ -0.4
GDNF-202ENST00000344622 WRNQ14191 1432 aaPredicted RBP eCLIP12.56□□□□□ -0.4
GDNF-202ENST00000344622 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
GDNF-202ENST00000344622 TOP2BQ02880 1626 aa12.55□□□□□ -0.4
GDNF-202ENST00000344622 THOC2Q8NI27 1593 aaKnown RBP12.54□□□□□ -0.4
GDNF-202ENST00000344622 SOGA1O94964 1423 aa12.52□□□□□ -0.41
GDNF-202ENST00000344622 CEP164Q9UPV0 1460 aa12.51□□□□□ -0.41
GDNF-202ENST00000344622 TOPBP1Q92547 1522 aa12.5□□□□□ -0.41
GDNF-202ENST00000344622 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
GDNF-202ENST00000344622 RAD54L2Q9Y4B4 1467 aa12.48□□□□□ -0.41
GDNF-202ENST00000344622 PDS5BQ9NTI5 1447 aa12.47□□□□□ -0.41
GDNF-202ENST00000344622 FGD5Q6ZNL6 1462 aa12.46□□□□□ -0.41
GDNF-202ENST00000344622 DNMBPQ6XZF7 1577 aa12.46□□□□□ -0.42
GDNF-202ENST00000344622 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.42
GDNF-202ENST00000344622 CUX2O14529 1486 aa12.45□□□□□ -0.42
GDNF-202ENST00000344622 WDR62O43379 1518 aa12.44□□□□□ -0.42
GDNF-202ENST00000344622 WDR97A6NE52 1622 aa12.43□□□□□ -0.42
GDNF-202ENST00000344622 TARBP1Q13395 1621 aaKnown RBP12.42□□□□□ -0.42
GDNF-202ENST00000344622 ERCC6Q03468 1493 aa12.42□□□□□ -0.42
GDNF-202ENST00000344622 FAM9AQ8IZU1 332 aaPredicted RBP12.42□□□□□ -0.42
GDNF-202ENST00000344622 MRC2Q9UBG0 1479 aa12.41□□□□□ -0.42
GDNF-202ENST00000344622 ZNF608Q9ULD9 1512 aaPredicted RBP12.39□□□□□ -0.43
GDNF-202ENST00000344622 LOC105371045A0A1W2PR82 267 aa12.38□□□□□ -0.43
GDNF-202ENST00000344622 EHMT2Q96KQ7 1210 aa12.37□□□□□ -0.43
GDNF-202ENST00000344622 TDRD9Q8NDG6 1382 aaKnown RBP12.32□□□□□ -0.44
GDNF-202ENST00000344622 AQRO60306 1485 aaKnown RBP eCLIP12.31□□□□□ -0.44
GDNF-202ENST00000344622 ABCA5Q8WWZ7 1642 aa12.31□□□□□ -0.44
GDNF-202ENST00000344622 ABCA10Q8WWZ4 1543 aa12.3□□□□□ -0.44
GDNF-202ENST00000344622 EIF4G3O43432 1585 aaKnown RBP12.27□□□□□ -0.45
GDNF-202ENST00000344622 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
GDNF-202ENST00000344622 IGF1RP08069 1367 aa12.24□□□□□ -0.45
GDNF-202ENST00000344622 RAPGEF2Q9Y4G8 1499 aa12.23□□□□□ -0.45
GDNF-202ENST00000344622 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
GDNF-202ENST00000344622 IFT140Q96RY7 1462 aa12.18□□□□□ -0.46
GDNF-202ENST00000344622 PRXQ9BXM0 1461 aa12.18□□□□□ -0.46
GDNF-202ENST00000344622 CSRNP3Q8WYN3 585 aa12.17□□□□□ -0.46
GDNF-202ENST00000344622 KIF27Q86VH2 1401 aa12.17□□□□□ -0.46
GDNF-202ENST00000344622 KIF21BO75037 1637 aa12.13□□□□□ -0.47
GDNF-202ENST00000344622 SNAPC4Q5SXM2 1469 aa12.12□□□□□ -0.47
GDNF-202ENST00000344622 ADAMTS12P58397 1594 aa12.12□□□□□ -0.47
GDNF-202ENST00000344622 ERICH3Q5RHP9 1530 aa12.11□□□□□ -0.47
GDNF-202ENST00000344622 CHD1O14646 1710 aa12.09□□□□□ -0.47
GDNF-202ENST00000344622 CARMIL1Q5VZK9 1371 aa12.08□□□□□ -0.48
GDNF-202ENST00000344622 GRIN2BQ13224 1484 aa12.07□□□□□ -0.48
GDNF-202ENST00000344622 EEA1Q15075 1411 aa12.07□□□□□ -0.48
GDNF-202ENST00000344622 CUL7Q14999 1698 aa12.06□□□□□ -0.48
GDNF-202ENST00000344622 CEP170Q5SW79 1584 aa12.06□□□□□ -0.48
GDNF-202ENST00000344622 RANGAP1P46060 587 aaPredicted RBP12.03□□□□□ -0.48
GDNF-202ENST00000344622 GOLGA3Q08378 1498 aa12.02□□□□□ -0.48
GDNF-202ENST00000344622 CTTNBP2Q8WZ74 1663 aa12.02□□□□□ -0.49
GDNF-202ENST00000344622 GRIN2AQ12879 1464 aa12□□□□□ -0.49
GDNF-202ENST00000344622 FHAD1B1AJZ9 1412 aa11.99□□□□□ -0.49
GDNF-202ENST00000344622 MAGI1Q96QZ7 1491 aaPredicted RBP11.98□□□□□ -0.49
GDNF-202ENST00000344622 SYNJ2O15056 1496 aa11.98□□□□□ -0.49
GDNF-202ENST00000344622 CEP162Q5TB80 1403 aa11.97□□□□□ -0.49
GDNF-202ENST00000344622 UBTFP17480 764 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms