RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 NISCHQ9Y2I1 1504 aa19.35■□□□□ 0.69
ZNF540-202ENST00000343599 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
ZNF540-202ENST00000343599 MYO15BQ96JP2 1530 aa17.39■□□□□ 0.37
ZNF540-202ENST00000343599 SHROOM4Q9ULL8 1493 aa17.28■□□□□ 0.36
ZNF540-202ENST00000343599 NACADO15069 1562 aa17.07■□□□□ 0.32
ZNF540-202ENST00000343599 RB1CC1Q8TDY2 1594 aa17.01■□□□□ 0.31
ZNF540-202ENST00000343599 DCAF1Q9Y4B6 1507 aa16.89■□□□□ 0.29
ZNF540-202ENST00000343599 ABCC9O60706 1549 aa16.7■□□□□ 0.26
ZNF540-202ENST00000343599 UNC13AQ9UPW8 1703 aa16.59■□□□□ 0.25
ZNF540-202ENST00000343599 BICRAQ9NZM4 1560 aa16.33■□□□□ 0.2
ZNF540-202ENST00000343599 ZCCHC6Q5VYS8 1495 aaKnown RBP16.15■□□□□ 0.18
ZNF540-202ENST00000343599 EIF4G1Q04637 1599 aaKnown RBP15.82■□□□□ 0.12
ZNF540-202ENST00000343599 CC2D2AQ9P2K1 1620 aa15.78■□□□□ 0.12
ZNF540-202ENST00000343599 CUX2O14529 1486 aa15.72■□□□□ 0.11
ZNF540-202ENST00000343599 SMARCA2P51531 1590 aa15.7■□□□□ 0.1
ZNF540-202ENST00000343599 PEG3Q9GZU2 1588 aa15.69■□□□□ 0.1
ZNF540-202ENST00000343599 HMGXB3Q12766 1538 aa15.66■□□□□ 0.1
ZNF540-202ENST00000343599 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.07
ZNF540-202ENST00000343599 DNAJC5BQ9UF47 199 aa15.51■□□□□ 0.07
ZNF540-202ENST00000343599 NCAPD3P42695 1498 aa15.48■□□□□ 0.07
ZNF540-202ENST00000343599 LAMC3Q9Y6N6 1575 aa15.35■□□□□ 0.05
ZNF540-202ENST00000343599 SCRIBQ14160 1630 aa15.31■□□□□ 0.04
ZNF540-202ENST00000343599 PRDM2Q13029 1718 aa15.28■□□□□ 0.04
ZNF540-202ENST00000343599 THOC2Q8NI27 1593 aaKnown RBP15.23■□□□□ 0.03
ZNF540-202ENST00000343599 SMARCA4P51532 1647 aa15.23■□□□□ 0.03
ZNF540-202ENST00000343599 BAZ1AQ9NRL2 1556 aaPredicted RBP15.2■□□□□ 0.02
ZNF540-202ENST00000343599 WDR97A6NE52 1622 aa15.17■□□□□ 0.02
ZNF540-202ENST00000343599 ATAD2BQ9ULI0 1458 aa15.06■□□□□ 0
ZNF540-202ENST00000343599 DNAJC5Q9H3Z4 198 aa15.06■□□□□ 0
ZNF540-202ENST00000343599 WDR62O43379 1518 aa15.03■□□□□ -0
ZNF540-202ENST00000343599 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
ZNF540-202ENST00000343599 PABPN1Q86U42 306 aaKnown RBP eCLIP14.89□□□□□ -0.03
ZNF540-202ENST00000343599 PDS5BQ9NTI5 1447 aa14.82□□□□□ -0.04
ZNF540-202ENST00000343599 KIF21AQ7Z4S6 1674 aa14.81□□□□□ -0.04
ZNF540-202ENST00000343599 MRC2Q9UBG0 1479 aa14.78□□□□□ -0.04
ZNF540-202ENST00000343599 ABCC8Q09428 1581 aa14.76□□□□□ -0.05
ZNF540-202ENST00000343599 TOP2AP11388 1531 aaKnown RBP14.66□□□□□ -0.06
ZNF540-202ENST00000343599 ERCC6Q03468 1493 aa14.65□□□□□ -0.06
ZNF540-202ENST00000343599 CFTRP13569 1480 aa14.63□□□□□ -0.07
ZNF540-202ENST00000343599 CADPSQ9ULU8 1353 aa14.59□□□□□ -0.07
ZNF540-202ENST00000343599 CEP164Q9UPV0 1460 aa14.5□□□□□ -0.09
ZNF540-202ENST00000343599 IFT140Q96RY7 1462 aa14.48□□□□□ -0.09
ZNF540-202ENST00000343599 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
ZNF540-202ENST00000343599 RSF1Q96T23 1441 aaPredicted RBP14.45□□□□□ -0.1
ZNF540-202ENST00000343599 DNMBPQ6XZF7 1577 aa14.44□□□□□ -0.1
ZNF540-202ENST00000343599 NESP48681 1621 aa14.43□□□□□ -0.1
ZNF540-202ENST00000343599 TARBP1Q13395 1621 aaKnown RBP14.38□□□□□ -0.11
ZNF540-202ENST00000343599 FANCD2Q9BXW9 1451 aa14.34□□□□□ -0.11
ZNF540-202ENST00000343599 CLASP1Q7Z460 1538 aa14.32□□□□□ -0.12
ZNF540-202ENST00000343599 WIZO95785 1651 aa14.29□□□□□ -0.12
ZNF540-202ENST00000343599 RIMBP3CA6NJZ7 1639 aa14.29□□□□□ -0.12
ZNF540-202ENST00000343599 RIMBP3BA6NNM3 1639 aa14.29□□□□□ -0.12
ZNF540-202ENST00000343599 RIMBP3Q9UFD9 1639 aa14.29□□□□□ -0.12
ZNF540-202ENST00000343599 URB2Q14146 1524 aaKnown RBP14.26□□□□□ -0.13
ZNF540-202ENST00000343599 EIF4G3O43432 1585 aaKnown RBP14.23□□□□□ -0.13
ZNF540-202ENST00000343599 SHROOM2Q13796 1616 aa14.22□□□□□ -0.13
ZNF540-202ENST00000343599 MAGI1Q96QZ7 1491 aaPredicted RBP14.21□□□□□ -0.13
ZNF540-202ENST00000343599 DCAF8L2P0C7V8 631 aa14.21□□□□□ -0.13
ZNF540-202ENST00000343599 CHD1O14646 1710 aa14.17□□□□□ -0.14
ZNF540-202ENST00000343599 SYNJ1O43426 1573 aa14.16□□□□□ -0.14
ZNF540-202ENST00000343599 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
ZNF540-202ENST00000343599 PBRM1Q86U86 1689 aa14.13□□□□□ -0.15
ZNF540-202ENST00000343599 ABCA5Q8WWZ7 1642 aa14.13□□□□□ -0.15
ZNF540-202ENST00000343599 BIVM-ERCC5R4GMW8 1640 aa14.13□□□□□ -0.15
ZNF540-202ENST00000343599 ARHGEF11O15085 1522 aa14.08□□□□□ -0.16
ZNF540-202ENST00000343599 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
ZNF540-202ENST00000343599 ERICH3Q5RHP9 1530 aa13.98□□□□□ -0.17
ZNF540-202ENST00000343599 OSCARQ8IYS5 282 aa13.96□□□□□ -0.18
ZNF540-202ENST00000343599 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
ZNF540-202ENST00000343599 SYNJ2O15056 1496 aa13.95□□□□□ -0.18
ZNF540-202ENST00000343599 GRIN2BQ13224 1484 aa13.93□□□□□ -0.18
ZNF540-202ENST00000343599 ADAMTS12P58397 1594 aa13.91□□□□□ -0.18
ZNF540-202ENST00000343599 MAPKBP1O60336 1514 aa13.9□□□□□ -0.18
ZNF540-202ENST00000343599 POLA1P09884 1462 aaPredicted RBP13.88□□□□□ -0.19
ZNF540-202ENST00000343599 TOP2BQ02880 1626 aa13.88□□□□□ -0.19
ZNF540-202ENST00000343599 NUP160Q12769 1436 aa13.87□□□□□ -0.19
ZNF540-202ENST00000343599 ARAP1Q96P48 1450 aa13.87□□□□□ -0.19
ZNF540-202ENST00000343599 CUL7Q14999 1698 aa13.87□□□□□ -0.19
ZNF540-202ENST00000343599 GLI2P10070 1586 aa13.86□□□□□ -0.19
ZNF540-202ENST00000343599 KIF13AQ9H1H9 1805 aa13.79□□□□□ -0.2
ZNF540-202ENST00000343599 CUX1P39880 1505 aa13.75□□□□□ -0.21
ZNF540-202ENST00000343599 ZNF608Q9ULD9 1512 aaPredicted RBP13.73□□□□□ -0.21
ZNF540-202ENST00000343599 UHRF1BP1LA0JNW5 1464 aa13.71□□□□□ -0.21
ZNF540-202ENST00000343599 RUSC2Q8N2Y8 1516 aa13.71□□□□□ -0.21
ZNF540-202ENST00000343599 FGD5Q6ZNL6 1462 aa13.68□□□□□ -0.22
ZNF540-202ENST00000343599 KIAA0586Q9BVV6 1533 aa13.68□□□□□ -0.22
ZNF540-202ENST00000343599 FHAD1B1AJZ9 1412 aa13.67□□□□□ -0.22
ZNF540-202ENST00000343599 GRIN2AQ12879 1464 aa13.67□□□□□ -0.22
ZNF540-202ENST00000343599 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
ZNF540-202ENST00000343599 CEP170Q5SW79 1584 aa13.66□□□□□ -0.22
ZNF540-202ENST00000343599 SOGA1O94964 1423 aa13.64□□□□□ -0.23
ZNF540-202ENST00000343599 GAPVD1Q14C86 1478 aa13.63□□□□□ -0.23
ZNF540-202ENST00000343599 DIP2BQ9P265 1576 aa13.59□□□□□ -0.23
ZNF540-202ENST00000343599 MAP3K4Q9Y6R4 1608 aa13.55□□□□□ -0.24
ZNF540-202ENST00000343599 ABCC10Q5T3U5 1492 aa13.54□□□□□ -0.24
ZNF540-202ENST00000343599 WRNQ14191 1432 aaPredicted RBP eCLIP13.52□□□□□ -0.24
ZNF540-202ENST00000343599 CFAP43Q8NDM7 1665 aa13.51□□□□□ -0.25
ZNF540-202ENST00000343599 PPRC1Q5VV67 1664 aaKnown RBP13.5□□□□□ -0.25
ZNF540-202ENST00000343599 ERCC6L2Q5T890 1561 aa13.49□□□□□ -0.25
ZNF540-202ENST00000343599 UGGT2Q9NYU1 1516 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms