RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 NISCHQ9Y2I1 1504 aa31.72■■■□□ 2.67
HLA-DQA1-201ENST00000343139 CCDC180Q9P1Z9 1646 aa28.15■■■□□ 2.1
HLA-DQA1-201ENST00000343139 ABCC9O60706 1549 aa27.42■■□□□ 1.98
HLA-DQA1-201ENST00000343139 NACADO15069 1562 aa26.5■■□□□ 1.83
HLA-DQA1-201ENST00000343139 RB1CC1Q8TDY2 1594 aa26.48■■□□□ 1.83
HLA-DQA1-201ENST00000343139 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
HLA-DQA1-201ENST00000343139 ZCCHC6Q5VYS8 1495 aaKnown RBP26.44■■□□□ 1.82
HLA-DQA1-201ENST00000343139 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
HLA-DQA1-201ENST00000343139 DCAF1Q9Y4B6 1507 aa26.33■■□□□ 1.81
HLA-DQA1-201ENST00000343139 UNC13AQ9UPW8 1703 aa25.73■■□□□ 1.71
HLA-DQA1-201ENST00000343139 BICRAQ9NZM4 1560 aa25.65■■□□□ 1.7
HLA-DQA1-201ENST00000343139 PABPN1Q86U42 306 aaKnown RBP eCLIP25.64■■□□□ 1.69
HLA-DQA1-201ENST00000343139 SCRIBQ14160 1630 aa25.6■■□□□ 1.69
HLA-DQA1-201ENST00000343139 SHROOM4Q9ULL8 1493 aa25.54■■□□□ 1.68
HLA-DQA1-201ENST00000343139 DNAJC5BQ9UF47 199 aa25.15■■□□□ 1.62
HLA-DQA1-201ENST00000343139 EIF4G1Q04637 1599 aaKnown RBP24.97■■□□□ 1.59
HLA-DQA1-201ENST00000343139 CC2D2AQ9P2K1 1620 aa24.83■■□□□ 1.57
HLA-DQA1-201ENST00000343139 CECR2Q9BXF3 1484 aa24.69■■□□□ 1.54
HLA-DQA1-201ENST00000343139 BAZ1AQ9NRL2 1556 aaPredicted RBP24.58■■□□□ 1.53
HLA-DQA1-201ENST00000343139 SMARCA4P51532 1647 aa24.56■■□□□ 1.52
HLA-DQA1-201ENST00000343139 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
HLA-DQA1-201ENST00000343139 ATAD2BQ9ULI0 1458 aa24.46■■□□□ 1.51
HLA-DQA1-201ENST00000343139 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
HLA-DQA1-201ENST00000343139 PEG3Q9GZU2 1588 aa24.4■■□□□ 1.5
HLA-DQA1-201ENST00000343139 MROH2BQ7Z745 1585 aa24.39■■□□□ 1.5
HLA-DQA1-201ENST00000343139 HMGXB3Q12766 1538 aa24.34■■□□□ 1.49
HLA-DQA1-201ENST00000343139 BAZ1BQ9UIG0 1483 aaKnown RBP24.23■■□□□ 1.47
HLA-DQA1-201ENST00000343139 RSF1Q96T23 1441 aaPredicted RBP24.18■■□□□ 1.46
HLA-DQA1-201ENST00000343139 WIZO95785 1651 aa24.08■■□□□ 1.44
HLA-DQA1-201ENST00000343139 TOP2AP11388 1531 aaKnown RBP23.91■■□□□ 1.42
HLA-DQA1-201ENST00000343139 LAMC3Q9Y6N6 1575 aa23.78■■□□□ 1.4
HLA-DQA1-201ENST00000343139 CADPSQ9ULU8 1353 aa23.75■■□□□ 1.39
HLA-DQA1-201ENST00000343139 NESP48681 1621 aa23.74■■□□□ 1.39
HLA-DQA1-201ENST00000343139 ERCC6Q03468 1493 aa23.67■■□□□ 1.38
HLA-DQA1-201ENST00000343139 PDS5BQ9NTI5 1447 aa23.65■■□□□ 1.38
HLA-DQA1-201ENST00000343139 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
HLA-DQA1-201ENST00000343139 CFTRP13569 1480 aa23.62■■□□□ 1.37
HLA-DQA1-201ENST00000343139 SUPT5HO00267 1087 aaKnown RBP23.5■■□□□ 1.35
HLA-DQA1-201ENST00000343139 CUX2O14529 1486 aa23.48■■□□□ 1.35
HLA-DQA1-201ENST00000343139 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
HLA-DQA1-201ENST00000343139 KIF21AQ7Z4S6 1674 aa23.42■■□□□ 1.34
HLA-DQA1-201ENST00000343139 THOC2Q8NI27 1593 aaKnown RBP23.41■■□□□ 1.34
HLA-DQA1-201ENST00000343139 CEP164Q9UPV0 1460 aa23.39■■□□□ 1.34
HLA-DQA1-201ENST00000343139 MRC2Q9UBG0 1479 aa23.36■■□□□ 1.33
HLA-DQA1-201ENST00000343139 PRDM2Q13029 1718 aa23.31■■□□□ 1.32
HLA-DQA1-201ENST00000343139 WDR62O43379 1518 aa23.29■■□□□ 1.32
HLA-DQA1-201ENST00000343139 URB2Q14146 1524 aaKnown RBP23.17■■□□□ 1.3
HLA-DQA1-201ENST00000343139 ABCC8Q09428 1581 aa23.13■■□□□ 1.29
HLA-DQA1-201ENST00000343139 TOPBP1Q92547 1522 aa23.06■■□□□ 1.28
HLA-DQA1-201ENST00000343139 DNMBPQ6XZF7 1577 aa23.03■■□□□ 1.28
HLA-DQA1-201ENST00000343139 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
HLA-DQA1-201ENST00000343139 CUX1P39880 1505 aa22.88■■□□□ 1.25
HLA-DQA1-201ENST00000343139 POLA1P09884 1462 aaPredicted RBP22.88■■□□□ 1.25
HLA-DQA1-201ENST00000343139 FGD5Q6ZNL6 1462 aa22.8■■□□□ 1.24
HLA-DQA1-201ENST00000343139 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
HLA-DQA1-201ENST00000343139 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
HLA-DQA1-201ENST00000343139 SOGA1O94964 1423 aa22.79■■□□□ 1.24
HLA-DQA1-201ENST00000343139 ZNF608Q9ULD9 1512 aaPredicted RBP22.75■■□□□ 1.23
HLA-DQA1-201ENST00000343139 RAD54L2Q9Y4B4 1467 aa22.73■■□□□ 1.23
HLA-DQA1-201ENST00000343139 TOP2BQ02880 1626 aa22.73■■□□□ 1.23
HLA-DQA1-201ENST00000343139 WDR97A6NE52 1622 aa22.7■■□□□ 1.22
HLA-DQA1-201ENST00000343139 BIVM-ERCC5R4GMW8 1640 aa22.69■■□□□ 1.22
HLA-DQA1-201ENST00000343139 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
HLA-DQA1-201ENST00000343139 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
HLA-DQA1-201ENST00000343139 EIF4G3O43432 1585 aaKnown RBP22.66■■□□□ 1.22
HLA-DQA1-201ENST00000343139 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.22
HLA-DQA1-201ENST00000343139 ABCA10Q8WWZ4 1543 aa22.64■■□□□ 1.21
HLA-DQA1-201ENST00000343139 TDRD9Q8NDG6 1382 aaKnown RBP22.62■■□□□ 1.21
HLA-DQA1-201ENST00000343139 GRIN2BQ13224 1484 aa22.53■■□□□ 1.2
HLA-DQA1-201ENST00000343139 GAPVD1Q14C86 1478 aa22.52■■□□□ 1.2
HLA-DQA1-201ENST00000343139 ABCA5Q8WWZ7 1642 aa22.5■■□□□ 1.19
HLA-DQA1-201ENST00000343139 OSCARQ8IYS5 282 aa22.5■■□□□ 1.19
HLA-DQA1-201ENST00000343139 MAGI1Q96QZ7 1491 aaPredicted RBP22.48■■□□□ 1.19
HLA-DQA1-201ENST00000343139 SNAPC4Q5SXM2 1469 aa22.44■■□□□ 1.18
HLA-DQA1-201ENST00000343139 SYNJ2O15056 1496 aa22.39■■□□□ 1.17
HLA-DQA1-201ENST00000343139 ERICH3Q5RHP9 1530 aa22.38■■□□□ 1.17
HLA-DQA1-201ENST00000343139 PBRM1Q86U86 1689 aa22.37■■□□□ 1.17
HLA-DQA1-201ENST00000343139 CHMP7Q8WUX9 453 aaPredicted RBP22.34■■□□□ 1.17
HLA-DQA1-201ENST00000343139 KIF27Q86VH2 1401 aa22.33■■□□□ 1.17
HLA-DQA1-201ENST00000343139 FBLN2P98095 1184 aa22.33■■□□□ 1.16
HLA-DQA1-201ENST00000343139 FHAD1B1AJZ9 1412 aa22.29■■□□□ 1.16
HLA-DQA1-201ENST00000343139 CHD1O14646 1710 aa22.29■■□□□ 1.16
HLA-DQA1-201ENST00000343139 ADAMTS12P58397 1594 aa22.27■■□□□ 1.16
HLA-DQA1-201ENST00000343139 TRIM41Q8WV44 630 aa22.26■■□□□ 1.15
HLA-DQA1-201ENST00000343139 IGF1RP08069 1367 aa22.24■■□□□ 1.15
HLA-DQA1-201ENST00000343139 GRIN2AQ12879 1464 aa22.22■■□□□ 1.15
HLA-DQA1-201ENST00000343139 CLASP1Q7Z460 1538 aa22.18■■□□□ 1.14
HLA-DQA1-201ENST00000343139 NUP160Q12769 1436 aa22.16■■□□□ 1.14
HLA-DQA1-201ENST00000343139 CUL7Q14999 1698 aa22.13■■□□□ 1.13
HLA-DQA1-201ENST00000343139 CARMIL1Q5VZK9 1371 aa22.09■■□□□ 1.13
HLA-DQA1-201ENST00000343139 ARHGEF11O15085 1522 aa22.09■■□□□ 1.13
HLA-DQA1-201ENST00000343139 CEP170Q5SW79 1584 aa22.07■■□□□ 1.12
HLA-DQA1-201ENST00000343139 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
HLA-DQA1-201ENST00000343139 CHIC1Q5VXU3 224 aa22.04■■□□□ 1.12
HLA-DQA1-201ENST00000343139 RIMBP3CA6NJZ7 1639 aa22.03■■□□□ 1.12
HLA-DQA1-201ENST00000343139 RIMBP3BA6NNM3 1639 aa22.03■■□□□ 1.12
HLA-DQA1-201ENST00000343139 RIMBP3Q9UFD9 1639 aa22.03■■□□□ 1.12
HLA-DQA1-201ENST00000343139 EEA1Q15075 1411 aa21.98■■□□□ 1.11
HLA-DQA1-201ENST00000343139 RAPGEF2Q9Y4G8 1499 aa21.97■■□□□ 1.11
HLA-DQA1-201ENST00000343139 KIAA0586Q9BVV6 1533 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms