RNA–Protein interactions for RNA: ENST00000339397.4

SRFBP1-201, Transcript of serum response factor binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRFBP1, Length 2,855 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRFBP1-201ENST00000339397 NISCHQ9Y2I1 1504 aa16.27■□□□□ 0.2
SRFBP1-201ENST00000339397 CCDC180Q9P1Z9 1646 aa13.92□□□□□ -0.18
SRFBP1-201ENST00000339397 DCAF8L2P0C7V8 631 aa13.72□□□□□ -0.21
SRFBP1-201ENST00000339397 SHROOM4Q9ULL8 1493 aa13.7□□□□□ -0.22
SRFBP1-201ENST00000339397 ZCCHC6Q5VYS8 1495 aaKnown RBP13.67□□□□□ -0.22
SRFBP1-201ENST00000339397 ABCC9O60706 1549 aa13.35□□□□□ -0.27
SRFBP1-201ENST00000339397 DCAF1Q9Y4B6 1507 aa13.3□□□□□ -0.28
SRFBP1-201ENST00000339397 SUPT5HO00267 1087 aaKnown RBP13.26□□□□□ -0.29
SRFBP1-201ENST00000339397 SCRIBQ14160 1630 aa13.07□□□□□ -0.32
SRFBP1-201ENST00000339397 MYO15BQ96JP2 1530 aa13.04□□□□□ -0.32
SRFBP1-201ENST00000339397 NACADO15069 1562 aa13□□□□□ -0.33
SRFBP1-201ENST00000339397 RB1CC1Q8TDY2 1594 aa12.87□□□□□ -0.35
SRFBP1-201ENST00000339397 CECR2Q9BXF3 1484 aa12.78□□□□□ -0.36
SRFBP1-201ENST00000339397 RSF1Q96T23 1441 aaPredicted RBP12.77□□□□□ -0.37
SRFBP1-201ENST00000339397 PABPN1Q86U42 306 aaKnown RBP eCLIP12.75□□□□□ -0.37
SRFBP1-201ENST00000339397 CHIC1Q5VXU3 224 aa12.69□□□□□ -0.38
SRFBP1-201ENST00000339397 UNC13AQ9UPW8 1703 aa12.68□□□□□ -0.38
SRFBP1-201ENST00000339397 MROH2BQ7Z745 1585 aa12.67□□□□□ -0.38
SRFBP1-201ENST00000339397 BICRAQ9NZM4 1560 aa12.58□□□□□ -0.4
SRFBP1-201ENST00000339397 WIZO95785 1651 aa12.56□□□□□ -0.4
SRFBP1-201ENST00000339397 BAZ1AQ9NRL2 1556 aaPredicted RBP12.49□□□□□ -0.41
SRFBP1-201ENST00000339397 SMARCA4P51532 1647 aa12.45□□□□□ -0.42
SRFBP1-201ENST00000339397 LOC105371045A0A1W2PR82 267 aa12.36□□□□□ -0.43
SRFBP1-201ENST00000339397 TRIM41Q8WV44 630 aa12.34□□□□□ -0.43
SRFBP1-201ENST00000339397 CCDC88BA6NC98 1476 aa12.32□□□□□ -0.44
SRFBP1-201ENST00000339397 TOP2AP11388 1531 aaKnown RBP12.31□□□□□ -0.44
SRFBP1-201ENST00000339397 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
SRFBP1-201ENST00000339397 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
SRFBP1-201ENST00000339397 SMARCA2P51531 1590 aa12.26□□□□□ -0.45
SRFBP1-201ENST00000339397 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
SRFBP1-201ENST00000339397 PEG3Q9GZU2 1588 aa12.21□□□□□ -0.45
SRFBP1-201ENST00000339397 BAZ1BQ9UIG0 1483 aaKnown RBP12.18□□□□□ -0.46
SRFBP1-201ENST00000339397 EIF4G1Q04637 1599 aaKnown RBP12.18□□□□□ -0.46
SRFBP1-201ENST00000339397 ABCC8Q09428 1581 aa12.17□□□□□ -0.46
SRFBP1-201ENST00000339397 NCAPD3P42695 1498 aa12.08□□□□□ -0.48
SRFBP1-201ENST00000339397 DNAJC5BQ9UF47 199 aa12.07□□□□□ -0.48
SRFBP1-201ENST00000339397 SOGA1O94964 1423 aa12□□□□□ -0.49
SRFBP1-201ENST00000339397 HMGXB3Q12766 1538 aa11.99□□□□□ -0.49
SRFBP1-201ENST00000339397 RUSC2Q8N2Y8 1516 aa11.98□□□□□ -0.49
SRFBP1-201ENST00000339397 WRNQ14191 1432 aaPredicted RBP eCLIP11.98□□□□□ -0.49
SRFBP1-201ENST00000339397 CC2D2AQ9P2K1 1620 aa11.98□□□□□ -0.49
SRFBP1-201ENST00000339397 SYNJ1O43426 1573 aa11.94□□□□□ -0.5
SRFBP1-201ENST00000339397 PCGF6Q9BYE7 350 aa11.93□□□□□ -0.5
SRFBP1-201ENST00000339397 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
SRFBP1-201ENST00000339397 CFTRP13569 1480 aa11.88□□□□□ -0.51
SRFBP1-201ENST00000339397 PPARGC1BQ86YN6 1023 aaKnown RBP11.85□□□□□ -0.51
SRFBP1-201ENST00000339397 CADPSQ9ULU8 1353 aa11.84□□□□□ -0.51
SRFBP1-201ENST00000339397 UBTFP17480 764 aaKnown RBP11.82□□□□□ -0.52
SRFBP1-201ENST00000339397 CUX1P39880 1505 aa11.8□□□□□ -0.52
SRFBP1-201ENST00000339397 NESP48681 1621 aa11.8□□□□□ -0.52
SRFBP1-201ENST00000339397 TOP2BQ02880 1626 aa11.79□□□□□ -0.52
SRFBP1-201ENST00000339397 EEA1Q15075 1411 aa11.76□□□□□ -0.53
SRFBP1-201ENST00000339397 RANGAP1P46060 587 aaPredicted RBP11.75□□□□□ -0.53
SRFBP1-201ENST00000339397 BIVM-ERCC5R4GMW8 1640 aa11.72□□□□□ -0.53
SRFBP1-201ENST00000339397 CEP162Q5TB80 1403 aa11.72□□□□□ -0.53
SRFBP1-201ENST00000339397 TRIM26Q12899 539 aaPredicted RBP11.72□□□□□ -0.53
SRFBP1-201ENST00000339397 TNIKQ9UKE5 1360 aa11.72□□□□□ -0.53
SRFBP1-201ENST00000339397 TTBK1Q5TCY1 1321 aaPredicted RBP11.71□□□□□ -0.53
SRFBP1-201ENST00000339397 FANCD2Q9BXW9 1451 aa11.71□□□□□ -0.54
SRFBP1-201ENST00000339397 RAPGEF2Q9Y4G8 1499 aa11.71□□□□□ -0.54
SRFBP1-201ENST00000339397 GOLGA3Q08378 1498 aa11.69□□□□□ -0.54
SRFBP1-201ENST00000339397 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
SRFBP1-201ENST00000339397 PRDM2Q13029 1718 aa11.65□□□□□ -0.54
SRFBP1-201ENST00000339397 FGD5Q6ZNL6 1462 aa11.64□□□□□ -0.55
SRFBP1-201ENST00000339397 KIF27Q86VH2 1401 aa11.63□□□□□ -0.55
SRFBP1-201ENST00000339397 CUX2O14529 1486 aa11.62□□□□□ -0.55
SRFBP1-201ENST00000339397 RAD54L2Q9Y4B4 1467 aa11.62□□□□□ -0.55
SRFBP1-201ENST00000339397 KIF21BO75037 1637 aa11.62□□□□□ -0.55
SRFBP1-201ENST00000339397 PRXQ9BXM0 1461 aa11.6□□□□□ -0.55
SRFBP1-201ENST00000339397 IGF1RP08069 1367 aa11.6□□□□□ -0.55
SRFBP1-201ENST00000339397 HRCP23327 699 aa11.6□□□□□ -0.55
SRFBP1-201ENST00000339397 TOPBP1Q92547 1522 aa11.58□□□□□ -0.56
SRFBP1-201ENST00000339397 CLIP1P30622 1438 aa11.58□□□□□ -0.56
SRFBP1-201ENST00000339397 URB2Q14146 1524 aaKnown RBP11.57□□□□□ -0.56
SRFBP1-201ENST00000339397 LAMC3Q9Y6N6 1575 aa11.57□□□□□ -0.56
SRFBP1-201ENST00000339397 POLA1P09884 1462 aaPredicted RBP11.57□□□□□ -0.56
SRFBP1-201ENST00000339397 PDS5BQ9NTI5 1447 aa11.55□□□□□ -0.56
SRFBP1-201ENST00000339397 DNMBPQ6XZF7 1577 aa11.54□□□□□ -0.56
SRFBP1-201ENST00000339397 AEBP2Q6ZN18 517 aaPredicted RBP11.53□□□□□ -0.56
SRFBP1-201ENST00000339397 CARMIL1Q5VZK9 1371 aa11.52□□□□□ -0.56
SRFBP1-201ENST00000339397 TDRD9Q8NDG6 1382 aaKnown RBP11.52□□□□□ -0.57
SRFBP1-201ENST00000339397 KIF21AQ7Z4S6 1674 aa11.51□□□□□ -0.57
SRFBP1-201ENST00000339397 ERICH3Q5RHP9 1530 aa11.5□□□□□ -0.57
SRFBP1-201ENST00000339397 ABCA10Q8WWZ4 1543 aa11.48□□□□□ -0.57
SRFBP1-201ENST00000339397 VPS8Q8N3P4 1428 aa11.46□□□□□ -0.57
SRFBP1-201ENST00000339397 P3H3Q8IVL6 736 aa11.45□□□□□ -0.58
SRFBP1-201ENST00000339397 ARAP1Q96P48 1450 aa11.45□□□□□ -0.58
SRFBP1-201ENST00000339397 ARHGAP35Q9NRY4 1499 aa11.42□□□□□ -0.58
SRFBP1-201ENST00000339397 KANK4Q5T7N3 995 aaPredicted RBP11.42□□□□□ -0.58
SRFBP1-201ENST00000339397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.41□□□□□ -0.58
SRFBP1-201ENST00000339397 APLP2Q06481 763 aa11.41□□□□□ -0.58
SRFBP1-201ENST00000339397 AQRO60306 1485 aaKnown RBP eCLIP11.4□□□□□ -0.586e-6■■■■□ 25.1
SRFBP1-201ENST00000339397 GAPVD1Q14C86 1478 aa11.39□□□□□ -0.59
SRFBP1-201ENST00000339397 MRC2Q9UBG0 1479 aa11.38□□□□□ -0.59
SRFBP1-201ENST00000339397 TARBP1Q13395 1621 aaKnown RBP11.36□□□□□ -0.59
SRFBP1-201ENST00000339397 WDR97A6NE52 1622 aa11.36□□□□□ -0.59
SRFBP1-201ENST00000339397 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
SRFBP1-201ENST00000339397 ERCC6Q03468 1493 aa11.35□□□□□ -0.59
SRFBP1-201ENST00000339397 ZNF608Q9ULD9 1512 aaPredicted RBP11.35□□□□□ -0.59
SRFBP1-201ENST00000339397 ABCA5Q8WWZ7 1642 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms