RNA–Protein interactions for RNA: ENST00000336937.8

ATF3-201, Transcript of activating transcription factor 3, humanhuman

TSL 1 (best) BASIC

Gene ATF3, Length 482 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-201ENST00000336937 NISCHQ9Y2I1 1504 aa16.92■□□□□ 0.3
ATF3-201ENST00000336937 CCDC180Q9P1Z9 1646 aa15.22■□□□□ 0.03
ATF3-201ENST00000336937 ABCC9O60706 1549 aa14.6□□□□□ -0.07
ATF3-201ENST00000336937 NACADO15069 1562 aa14.26□□□□□ -0.13
ATF3-201ENST00000336937 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
ATF3-201ENST00000336937 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
ATF3-201ENST00000336937 DCAF1Q9Y4B6 1507 aa14.15□□□□□ -0.14
ATF3-201ENST00000336937 ZCCHC6Q5VYS8 1495 aaKnown RBP14.13□□□□□ -0.15
ATF3-201ENST00000336937 DCAF8L2P0C7V8 631 aa13.87□□□□□ -0.19
ATF3-201ENST00000336937 UNC13AQ9UPW8 1703 aa13.87□□□□□ -0.19
ATF3-201ENST00000336937 SHROOM4Q9ULL8 1493 aa13.85□□□□□ -0.19
ATF3-201ENST00000336937 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
ATF3-201ENST00000336937 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
ATF3-201ENST00000336937 PABPN1Q86U42 306 aaKnown RBP eCLIP13.52□□□□□ -0.25
ATF3-201ENST00000336937 EIF4G1Q04637 1599 aaKnown RBP13.4□□□□□ -0.26
ATF3-201ENST00000336937 CC2D2AQ9P2K1 1620 aa13.31□□□□□ -0.28
ATF3-201ENST00000336937 DNAJC5BQ9UF47 199 aa13.22□□□□□ -0.29
ATF3-201ENST00000336937 CECR2Q9BXF3 1484 aa13.2□□□□□ -0.3
ATF3-201ENST00000336937 BAZ1AQ9NRL2 1556 aaPredicted RBP13.2□□□□□ -0.3
ATF3-201ENST00000336937 SMARCA4P51532 1647 aa13.16□□□□□ -0.3
ATF3-201ENST00000336937 SMARCA2P51531 1590 aa13.14□□□□□ -0.31
ATF3-201ENST00000336937 PEG3Q9GZU2 1588 aa13.11□□□□□ -0.31
ATF3-201ENST00000336937 HMGXB3Q12766 1538 aa13.1□□□□□ -0.31
ATF3-201ENST00000336937 NCAPD3P42695 1498 aa13.08□□□□□ -0.32
ATF3-201ENST00000336937 ATAD2BQ9ULI0 1458 aa13.04□□□□□ -0.32
ATF3-201ENST00000336937 BAZ1BQ9UIG0 1483 aaKnown RBP12.97□□□□□ -0.33
ATF3-201ENST00000336937 MROH2BQ7Z745 1585 aa12.95□□□□□ -0.34
ATF3-201ENST00000336937 WIZO95785 1651 aa12.83□□□□□ -0.35
ATF3-201ENST00000336937 LAMC3Q9Y6N6 1575 aa12.81□□□□□ -0.36
ATF3-201ENST00000336937 RSF1Q96T23 1441 aaPredicted RBP12.81□□□□□ -0.36
ATF3-201ENST00000336937 TOP2AP11388 1531 aaKnown RBP12.81□□□□□ -0.36
ATF3-201ENST00000336937 ERCC6Q03468 1493 aa12.7□□□□□ -0.38
ATF3-201ENST00000336937 PDS5BQ9NTI5 1447 aa12.68□□□□□ -0.38
ATF3-201ENST00000336937 PRDM2Q13029 1718 aa12.67□□□□□ -0.38
ATF3-201ENST00000336937 CUX2O14529 1486 aa12.66□□□□□ -0.38
ATF3-201ENST00000336937 CADPSQ9ULU8 1353 aa12.66□□□□□ -0.38
ATF3-201ENST00000336937 CFTRP13569 1480 aa12.62□□□□□ -0.39
ATF3-201ENST00000336937 NESP48681 1621 aa12.61□□□□□ -0.39
ATF3-201ENST00000336937 KIF21AQ7Z4S6 1674 aa12.59□□□□□ -0.39
ATF3-201ENST00000336937 THOC2Q8NI27 1593 aaKnown RBP12.59□□□□□ -0.39
ATF3-201ENST00000336937 CEP164Q9UPV0 1460 aa12.56□□□□□ -0.4
ATF3-201ENST00000336937 CCDC88BA6NC98 1476 aa12.53□□□□□ -0.4
ATF3-201ENST00000336937 MRC2Q9UBG0 1479 aa12.53□□□□□ -0.4
ATF3-201ENST00000336937 FANCD2Q9BXW9 1451 aa12.52□□□□□ -0.41
ATF3-201ENST00000336937 WDR62O43379 1518 aa12.52□□□□□ -0.41
ATF3-201ENST00000336937 ABCC8Q09428 1581 aa12.45□□□□□ -0.42
ATF3-201ENST00000336937 DNMBPQ6XZF7 1577 aa12.36□□□□□ -0.43
ATF3-201ENST00000336937 URB2Q14146 1524 aaKnown RBP12.34□□□□□ -0.43
ATF3-201ENST00000336937 WDR97A6NE52 1622 aa12.32□□□□□ -0.44
ATF3-201ENST00000336937 SUPT5HO00267 1087 aaKnown RBP12.31□□□□□ -0.44
ATF3-201ENST00000336937 TOPBP1Q92547 1522 aa12.31□□□□□ -0.44
ATF3-201ENST00000336937 IFT140Q96RY7 1462 aa12.3□□□□□ -0.44
ATF3-201ENST00000336937 POLA1P09884 1462 aaPredicted RBP12.21□□□□□ -0.46
ATF3-201ENST00000336937 TARBP1Q13395 1621 aaKnown RBP12.2□□□□□ -0.46
ATF3-201ENST00000336937 BIVM-ERCC5R4GMW8 1640 aa12.19□□□□□ -0.46
ATF3-201ENST00000336937 EIF4G3O43432 1585 aaKnown RBP12.18□□□□□ -0.46
ATF3-201ENST00000336937 CUX1P39880 1505 aa12.18□□□□□ -0.46
ATF3-201ENST00000336937 TOP2BQ02880 1626 aa12.18□□□□□ -0.46
ATF3-201ENST00000336937 FGD5Q6ZNL6 1462 aa12.16□□□□□ -0.46
ATF3-201ENST00000336937 WRNQ14191 1432 aaPredicted RBP eCLIP12.14□□□□□ -0.47
ATF3-201ENST00000336937 SOGA1O94964 1423 aa12.11□□□□□ -0.47
ATF3-201ENST00000336937 ABCA10Q8WWZ4 1543 aa12.11□□□□□ -0.47
ATF3-201ENST00000336937 ZNF608Q9ULD9 1512 aaPredicted RBP12.09□□□□□ -0.47
ATF3-201ENST00000336937 DNAJC5Q9H3Z4 198 aa12.08□□□□□ -0.48
ATF3-201ENST00000336937 SYNJ1O43426 1573 aa12.08□□□□□ -0.48
ATF3-201ENST00000336937 MAGI1Q96QZ7 1491 aaPredicted RBP12.08□□□□□ -0.48
ATF3-201ENST00000336937 ABCA5Q8WWZ7 1642 aa12.08□□□□□ -0.48
ATF3-201ENST00000336937 PBRM1Q86U86 1689 aa12.07□□□□□ -0.48
ATF3-201ENST00000336937 GRIN2BQ13224 1484 aa12.06□□□□□ -0.48
ATF3-201ENST00000336937 RAD54L2Q9Y4B4 1467 aa12.04□□□□□ -0.48
ATF3-201ENST00000336937 GAPVD1Q14C86 1478 aa12.02□□□□□ -0.48
ATF3-201ENST00000336937 ERICH3Q5RHP9 1530 aa12.01□□□□□ -0.49
ATF3-201ENST00000336937 CHD1O14646 1710 aa12□□□□□ -0.49
ATF3-201ENST00000336937 AQRO60306 1485 aaKnown RBP eCLIP12□□□□□ -0.498e-7■□□□□ 9.1
ATF3-201ENST00000336937 SYNJ2O15056 1496 aa11.99□□□□□ -0.49
ATF3-201ENST00000336937 SNAPC4Q5SXM2 1469 aa11.99□□□□□ -0.49
ATF3-201ENST00000336937 OSCARQ8IYS5 282 aa11.98□□□□□ -0.49
ATF3-201ENST00000336937 TDRD9Q8NDG6 1382 aaKnown RBP11.97□□□□□ -0.49
ATF3-201ENST00000336937 ADAMTS12P58397 1594 aa11.96□□□□□ -0.5
ATF3-201ENST00000336937 CUL7Q14999 1698 aa11.94□□□□□ -0.5
ATF3-201ENST00000336937 KIF27Q86VH2 1401 aa11.92□□□□□ -0.5
ATF3-201ENST00000336937 FHAD1B1AJZ9 1412 aa11.91□□□□□ -0.5
ATF3-201ENST00000336937 CLASP1Q7Z460 1538 aa11.9□□□□□ -0.5
ATF3-201ENST00000336937 GRIN2AQ12879 1464 aa11.89□□□□□ -0.51
ATF3-201ENST00000336937 CHMP7Q8WUX9 453 aaPredicted RBP11.87□□□□□ -0.51
ATF3-201ENST00000336937 ARHGEF11O15085 1522 aa11.85□□□□□ -0.51
ATF3-201ENST00000336937 NUP160Q12769 1436 aa11.85□□□□□ -0.51
ATF3-201ENST00000336937 RIMBP3CA6NJZ7 1639 aa11.83□□□□□ -0.52
ATF3-201ENST00000336937 RIMBP3BA6NNM3 1639 aa11.83□□□□□ -0.52
ATF3-201ENST00000336937 RIMBP3Q9UFD9 1639 aa11.83□□□□□ -0.52
ATF3-201ENST00000336937 FBLN2P98095 1184 aa11.82□□□□□ -0.52
ATF3-201ENST00000336937 RUSC2Q8N2Y8 1516 aa11.8□□□□□ -0.52
ATF3-201ENST00000336937 CEP170Q5SW79 1584 aa11.79□□□□□ -0.52
ATF3-201ENST00000336937 SHROOM2Q13796 1616 aa11.79□□□□□ -0.52
ATF3-201ENST00000336937 EEA1Q15075 1411 aa11.78□□□□□ -0.52
ATF3-201ENST00000336937 IGF1RP08069 1367 aa11.76□□□□□ -0.53
ATF3-201ENST00000336937 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
ATF3-201ENST00000336937 KIAA0586Q9BVV6 1533 aa11.73□□□□□ -0.53
ATF3-201ENST00000336937 RAPGEF2Q9Y4G8 1499 aa11.72□□□□□ -0.53
ATF3-201ENST00000336937 CARMIL1Q5VZK9 1371 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms