RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 NISCHQ9Y2I1 1504 aa34.59■■■■□ 3.13
CCDC88C-202ENST00000334448 CCDC180Q9P1Z9 1646 aa30.33■■■□□ 2.45
CCDC88C-202ENST00000334448 ZCCHC6Q5VYS8 1495 aaKnown RBP29.05■■■□□ 2.24
CCDC88C-202ENST00000334448 DCAF1Q9Y4B6 1507 aa28.76■■■□□ 2.19
CCDC88C-202ENST00000334448 ABCC9O60706 1549 aa28.65■■■□□ 2.18
CCDC88C-202ENST00000334448 MYO15BQ96JP2 1530 aa28.55■■■□□ 2.16
CCDC88C-202ENST00000334448 NACADO15069 1562 aa28.3■■■□□ 2.12
CCDC88C-202ENST00000334448 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
CCDC88C-202ENST00000334448 RB1CC1Q8TDY2 1594 aa28.05■■■□□ 2.08
CCDC88C-202ENST00000334448 SHROOM4Q9ULL8 1493 aa27.71■■■□□ 2.03
CCDC88C-202ENST00000334448 SCRIBQ14160 1630 aa27.65■■■□□ 2.02
CCDC88C-202ENST00000334448 UNC13AQ9UPW8 1703 aa27.34■■□□□ 1.97
CCDC88C-202ENST00000334448 BICRAQ9NZM4 1560 aa27.21■■□□□ 1.95
CCDC88C-202ENST00000334448 PABPN1Q86U42 306 aaKnown RBP eCLIP26.89■■□□□ 1.9
CCDC88C-202ENST00000334448 CECR2Q9BXF3 1484 aa26.79■■□□□ 1.88
CCDC88C-202ENST00000334448 BAZ1AQ9NRL2 1556 aaPredicted RBP26.74■■□□□ 1.87
CCDC88C-202ENST00000334448 RSF1Q96T23 1441 aaPredicted RBP26.71■■□□□ 1.87
CCDC88C-202ENST00000334448 MROH2BQ7Z745 1585 aa26.64■■□□□ 1.86
CCDC88C-202ENST00000334448 SMARCA4P51532 1647 aa26.61■■□□□ 1.85
CCDC88C-202ENST00000334448 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
CCDC88C-202ENST00000334448 PEG3Q9GZU2 1588 aa26.42■■□□□ 1.82
CCDC88C-202ENST00000334448 EIF4G1Q04637 1599 aaKnown RBP26.38■■□□□ 1.81
CCDC88C-202ENST00000334448 WIZO95785 1651 aa26.34■■□□□ 1.81
CCDC88C-202ENST00000334448 SMARCA2P51531 1590 aa26.26■■□□□ 1.79
CCDC88C-202ENST00000334448 ATAD2BQ9ULI0 1458 aa26.24■■□□□ 1.79
CCDC88C-202ENST00000334448 TOP2AP11388 1531 aaKnown RBP26.22■■□□□ 1.79
CCDC88C-202ENST00000334448 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
CCDC88C-202ENST00000334448 HMGXB3Q12766 1538 aa26.09■■□□□ 1.77
CCDC88C-202ENST00000334448 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
CCDC88C-202ENST00000334448 CC2D2AQ9P2K1 1620 aa25.99■■□□□ 1.75
CCDC88C-202ENST00000334448 CCDC88BA6NC98 1476 aa25.86■■□□□ 1.73
CCDC88C-202ENST00000334448 CHIC1Q5VXU3 224 aa25.46■■□□□ 1.67
CCDC88C-202ENST00000334448 CFTRP13569 1480 aa25.46■■□□□ 1.67
CCDC88C-202ENST00000334448 DNAJC5BQ9UF47 199 aa25.44■■□□□ 1.66
CCDC88C-202ENST00000334448 CADPSQ9ULU8 1353 aa25.37■■□□□ 1.65
CCDC88C-202ENST00000334448 PRDM2Q13029 1718 aa25.24■■□□□ 1.63
CCDC88C-202ENST00000334448 LAMC3Q9Y6N6 1575 aa25.24■■□□□ 1.63
CCDC88C-202ENST00000334448 ABCC8Q09428 1581 aa25.14■■□□□ 1.62
CCDC88C-202ENST00000334448 WRNQ14191 1432 aaPredicted RBP eCLIP25.13■■□□□ 1.61
CCDC88C-202ENST00000334448 NESP48681 1621 aa25.09■■□□□ 1.61
CCDC88C-202ENST00000334448 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
CCDC88C-202ENST00000334448 FANCD2Q9BXW9 1451 aa25.05■■□□□ 1.6
CCDC88C-202ENST00000334448 PDS5BQ9NTI5 1447 aa25.03■■□□□ 1.6
CCDC88C-202ENST00000334448 SYNJ1O43426 1573 aa25.01■■□□□ 1.59
CCDC88C-202ENST00000334448 TOP2BQ02880 1626 aa24.99■■□□□ 1.59
CCDC88C-202ENST00000334448 BIVM-ERCC5R4GMW8 1640 aa24.97■■□□□ 1.59
CCDC88C-202ENST00000334448 CUX1P39880 1505 aa24.94■■□□□ 1.58
CCDC88C-202ENST00000334448 CEP164Q9UPV0 1460 aa24.94■■□□□ 1.58
CCDC88C-202ENST00000334448 DNMBPQ6XZF7 1577 aa24.84■■□□□ 1.57
CCDC88C-202ENST00000334448 KIF21AQ7Z4S6 1674 aa24.79■■□□□ 1.56
CCDC88C-202ENST00000334448 TOPBP1Q92547 1522 aa24.77■■□□□ 1.56
CCDC88C-202ENST00000334448 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
CCDC88C-202ENST00000334448 EEA1Q15075 1411 aa24.76■■□□□ 1.55
CCDC88C-202ENST00000334448 MRC2Q9UBG0 1479 aa24.72■■□□□ 1.55
CCDC88C-202ENST00000334448 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
CCDC88C-202ENST00000334448 SOGA1O94964 1423 aa24.66■■□□□ 1.54
CCDC88C-202ENST00000334448 WDR62O43379 1518 aa24.64■■□□□ 1.53
CCDC88C-202ENST00000334448 POLA1P09884 1462 aaPredicted RBP24.64■■□□□ 1.53
CCDC88C-202ENST00000334448 ERCC6Q03468 1493 aa24.62■■□□□ 1.53
CCDC88C-202ENST00000334448 THOC2Q8NI27 1593 aaKnown RBP24.57■■□□□ 1.52
CCDC88C-202ENST00000334448 ABCA10Q8WWZ4 1543 aa24.56■■□□□ 1.52
CCDC88C-202ENST00000334448 RUSC2Q8N2Y8 1516 aa24.55■■□□□ 1.52
CCDC88C-202ENST00000334448 KIF27Q86VH2 1401 aa24.53■■□□□ 1.52
CCDC88C-202ENST00000334448 CSRNP3Q8WYN3 585 aa24.48■■□□□ 1.51
CCDC88C-202ENST00000334448 WDR97A6NE52 1622 aa24.46■■□□□ 1.51
CCDC88C-202ENST00000334448 CUX2O14529 1486 aa24.46■■□□□ 1.51
CCDC88C-202ENST00000334448 RAD54L2Q9Y4B4 1467 aa24.46■■□□□ 1.51
CCDC88C-202ENST00000334448 FAM9AQ8IZU1 332 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-202ENST00000334448 TARBP1Q13395 1621 aaKnown RBP24.44■■□□□ 1.5
CCDC88C-202ENST00000334448 IFT140Q96RY7 1462 aa24.4■■□□□ 1.5
CCDC88C-202ENST00000334448 KIF21BO75037 1637 aa24.39■■□□□ 1.5
CCDC88C-202ENST00000334448 PRXQ9BXM0 1461 aa24.36■■□□□ 1.49
CCDC88C-202ENST00000334448 ABCA5Q8WWZ7 1642 aa24.35■■□□□ 1.49
CCDC88C-202ENST00000334448 IGF1RP08069 1367 aa24.32■■□□□ 1.48
CCDC88C-202ENST00000334448 GOLGA3Q08378 1498 aa24.32■■□□□ 1.48
CCDC88C-202ENST00000334448 ERICH3Q5RHP9 1530 aa24.31■■□□□ 1.48
CCDC88C-202ENST00000334448 LOC105371045A0A1W2PR82 267 aa24.31■■□□□ 1.48
CCDC88C-202ENST00000334448 GAPVD1Q14C86 1478 aa24.26■■□□□ 1.47
CCDC88C-202ENST00000334448 TDRD9Q8NDG6 1382 aaKnown RBP24.23■■□□□ 1.47
CCDC88C-202ENST00000334448 CUL7Q14999 1698 aa24.21■■□□□ 1.47
CCDC88C-202ENST00000334448 RAPGEF2Q9Y4G8 1499 aa24.2■■□□□ 1.47
CCDC88C-202ENST00000334448 TNIKQ9UKE5 1360 aa24.2■■□□□ 1.46
CCDC88C-202ENST00000334448 CARMIL1Q5VZK9 1371 aa24.17■■□□□ 1.46
CCDC88C-202ENST00000334448 ZNF608Q9ULD9 1512 aaPredicted RBP24.16■■□□□ 1.46
CCDC88C-202ENST00000334448 GRIN2BQ13224 1484 aa24.15■■□□□ 1.46
CCDC88C-202ENST00000334448 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.452e-6■■■□□ 18.3
CCDC88C-202ENST00000334448 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
CCDC88C-202ENST00000334448 PBRM1Q86U86 1689 aa24.1■■□□□ 1.45
CCDC88C-202ENST00000334448 FHAD1B1AJZ9 1412 aa24.05■■□□□ 1.44
CCDC88C-202ENST00000334448 ADAMTS12P58397 1594 aa24.04■■□□□ 1.44
CCDC88C-202ENST00000334448 UBTFP17480 764 aaKnown RBP24.02■■□□□ 1.44
CCDC88C-202ENST00000334448 MAGI1Q96QZ7 1491 aaPredicted RBP24.01■■□□□ 1.43
CCDC88C-202ENST00000334448 CEP162Q5TB80 1403 aa24■■□□□ 1.43
CCDC88C-202ENST00000334448 EHMT2Q96KQ7 1210 aa23.97■■□□□ 1.43
CCDC88C-202ENST00000334448 SNAPC4Q5SXM2 1469 aa23.96■■□□□ 1.43
CCDC88C-202ENST00000334448 SYNJ2O15056 1496 aa23.88■■□□□ 1.41
CCDC88C-202ENST00000334448 CLIP1P30622 1438 aa23.87■■□□□ 1.41
CCDC88C-202ENST00000334448 GRIN2AQ12879 1464 aa23.84■■□□□ 1.41
CCDC88C-202ENST00000334448 CTTNBP2Q8WZ74 1663 aa23.81■■□□□ 1.4
CCDC88C-202ENST00000334448 NUP160Q12769 1436 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms