RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 NISCHQ9Y2I1 1504 aa20.57■□□□□ 0.88
CAPN3-201ENST00000318023 ABCC9O60706 1549 aa18.21■□□□□ 0.51
CAPN3-201ENST00000318023 DCAF8L2P0C7V8 631 aa17.97■□□□□ 0.47
CAPN3-201ENST00000318023 CCDC180Q9P1Z9 1646 aa17.95■□□□□ 0.46
CAPN3-201ENST00000318023 PABPN1Q86U42 306 aaKnown RBP eCLIP17.24■□□□□ 0.35
CAPN3-201ENST00000318023 RB1CC1Q8TDY2 1594 aa17.12■□□□□ 0.33
CAPN3-201ENST00000318023 ZCCHC6Q5VYS8 1495 aaKnown RBP17.08■□□□□ 0.33
CAPN3-201ENST00000318023 NACADO15069 1562 aa17.03■□□□□ 0.32
CAPN3-201ENST00000318023 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
CAPN3-201ENST00000318023 SCRIBQ14160 1630 aa16.87■□□□□ 0.29
CAPN3-201ENST00000318023 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
CAPN3-201ENST00000318023 MYO15BQ96JP2 1530 aa16.72■□□□□ 0.27
CAPN3-201ENST00000318023 DCAF1Q9Y4B6 1507 aa16.72■□□□□ 0.27
CAPN3-201ENST00000318023 UNC13AQ9UPW8 1703 aa16.65■□□□□ 0.26
CAPN3-201ENST00000318023 BICRAQ9NZM4 1560 aa16.62■□□□□ 0.25
CAPN3-201ENST00000318023 CECR2Q9BXF3 1484 aa16.26■□□□□ 0.19
CAPN3-201ENST00000318023 EIF4G1Q04637 1599 aaKnown RBP16.25■□□□□ 0.19
CAPN3-201ENST00000318023 CC2D2AQ9P2K1 1620 aa16.21■□□□□ 0.19
CAPN3-201ENST00000318023 MROH2BQ7Z745 1585 aa15.99■□□□□ 0.15
CAPN3-201ENST00000318023 SUPT5HO00267 1087 aaKnown RBP15.98■□□□□ 0.15
CAPN3-201ENST00000318023 ATAD2BQ9ULI0 1458 aa15.93■□□□□ 0.14
CAPN3-201ENST00000318023 SMARCA4P51532 1647 aa15.92■□□□□ 0.14
CAPN3-201ENST00000318023 BAZ1AQ9NRL2 1556 aaPredicted RBP15.9■□□□□ 0.14
CAPN3-201ENST00000318023 BAZ1BQ9UIG0 1483 aaKnown RBP15.85■□□□□ 0.13
CAPN3-201ENST00000318023 PELP1Q8IZL8 1130 aaKnown RBP15.81■□□□□ 0.12
CAPN3-201ENST00000318023 RSF1Q96T23 1441 aaPredicted RBP15.81■□□□□ 0.12
CAPN3-201ENST00000318023 NCAPD3P42695 1498 aa15.8■□□□□ 0.12
CAPN3-201ENST00000318023 WIZO95785 1651 aa15.79■□□□□ 0.12
CAPN3-201ENST00000318023 SMARCA2P51531 1590 aa15.77■□□□□ 0.12
CAPN3-201ENST00000318023 HRCP23327 699 aa15.74■□□□□ 0.11
CAPN3-201ENST00000318023 NESP48681 1621 aa15.73■□□□□ 0.11
CAPN3-201ENST00000318023 ERCC6Q03468 1493 aa15.65■□□□□ 0.1
CAPN3-201ENST00000318023 HMGXB3Q12766 1538 aa15.61■□□□□ 0.09
CAPN3-201ENST00000318023 PPARGC1BQ86YN6 1023 aaKnown RBP15.58■□□□□ 0.08
CAPN3-201ENST00000318023 PEG3Q9GZU2 1588 aa15.56■□□□□ 0.08
CAPN3-201ENST00000318023 CADPSQ9ULU8 1353 aa15.49■□□□□ 0.07
CAPN3-201ENST00000318023 CCDC88BA6NC98 1476 aa15.47■□□□□ 0.07
CAPN3-201ENST00000318023 TOP2AP11388 1531 aaKnown RBP15.47■□□□□ 0.07
CAPN3-201ENST00000318023 PDS5BQ9NTI5 1447 aa15.4■□□□□ 0.06
CAPN3-201ENST00000318023 FANCD2Q9BXW9 1451 aa15.34■□□□□ 0.05
CAPN3-201ENST00000318023 LAMC3Q9Y6N6 1575 aa15.31■□□□□ 0.04
CAPN3-201ENST00000318023 CFTRP13569 1480 aa15.3■□□□□ 0.04
CAPN3-201ENST00000318023 PCGF6Q9BYE7 350 aa15.29■□□□□ 0.04
CAPN3-201ENST00000318023 MYT1Q01538 1121 aa15.29■□□□□ 0.04
CAPN3-201ENST00000318023 CEP164Q9UPV0 1460 aa15.28■□□□□ 0.04
CAPN3-201ENST00000318023 KIF21AQ7Z4S6 1674 aa15.28■□□□□ 0.04
CAPN3-201ENST00000318023 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
CAPN3-201ENST00000318023 MRC2Q9UBG0 1479 aa15.2■□□□□ 0.02
CAPN3-201ENST00000318023 URB2Q14146 1524 aaKnown RBP15.16■□□□□ 0.02
CAPN3-201ENST00000318023 THOC2Q8NI27 1593 aaKnown RBP15.14■□□□□ 0.01
CAPN3-201ENST00000318023 FBLN2P98095 1184 aa15.13■□□□□ 0.01
CAPN3-201ENST00000318023 CUX2O14529 1486 aa15.13■□□□□ 0.01
CAPN3-201ENST00000318023 TDRD9Q8NDG6 1382 aaKnown RBP15.05■□□□□ 0
CAPN3-201ENST00000318023 RAD54L2Q9Y4B4 1467 aa15.05■□□□□ -0
CAPN3-201ENST00000318023 TOPBP1Q92547 1522 aa15.04■□□□□ -0
CAPN3-201ENST00000318023 ABCC8Q09428 1581 aa15.04■□□□□ -0
CAPN3-201ENST00000318023 WDR62O43379 1518 aa15.03■□□□□ -0
CAPN3-201ENST00000318023 ZNF608Q9ULD9 1512 aaPredicted RBP15.03■□□□□ -0
CAPN3-201ENST00000318023 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.01
CAPN3-201ENST00000318023 SOGA1O94964 1423 aa14.98□□□□□ -0.01
CAPN3-201ENST00000318023 DNAJC5Q9H3Z4 198 aa14.95□□□□□ -0.02
CAPN3-201ENST00000318023 POLA1P09884 1462 aaPredicted RBP14.95□□□□□ -0.02
CAPN3-201ENST00000318023 FGD5Q6ZNL6 1462 aa14.95□□□□□ -0.02
CAPN3-201ENST00000318023 CUX1P39880 1505 aa14.95□□□□□ -0.02
CAPN3-201ENST00000318023 EHMT2Q96KQ7 1210 aa14.94□□□□□ -0.02
CAPN3-201ENST00000318023 WRNQ14191 1432 aaPredicted RBP eCLIP14.94□□□□□ -0.02
CAPN3-201ENST00000318023 DNMBPQ6XZF7 1577 aa14.91□□□□□ -0.02
CAPN3-201ENST00000318023 FAM9AQ8IZU1 332 aaPredicted RBP14.89□□□□□ -0.03
CAPN3-201ENST00000318023 TRIM41Q8WV44 630 aa14.89□□□□□ -0.03
CAPN3-201ENST00000318023 IFT140Q96RY7 1462 aa14.88□□□□□ -0.03
CAPN3-201ENST00000318023 CHMP7Q8WUX9 453 aaPredicted RBP14.87□□□□□ -0.03
CAPN3-201ENST00000318023 OSCARQ8IYS5 282 aa14.87□□□□□ -0.03
CAPN3-201ENST00000318023 PRDM2Q13029 1718 aa14.86□□□□□ -0.03
CAPN3-201ENST00000318023 SYNJ1O43426 1573 aa14.83□□□□□ -0.03
CAPN3-201ENST00000318023 TTBK1Q5TCY1 1321 aaPredicted RBP14.8□□□□□ -0.04
CAPN3-201ENST00000318023 EIF4G3O43432 1585 aaKnown RBP14.77□□□□□ -0.05
CAPN3-201ENST00000318023 SNAPC4Q5SXM2 1469 aa14.75□□□□□ -0.05
CAPN3-201ENST00000318023 TARBP1Q13395 1621 aaKnown RBP14.74□□□□□ -0.05
CAPN3-201ENST00000318023 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
CAPN3-201ENST00000318023 RANGAP1P46060 587 aaPredicted RBP14.74□□□□□ -0.05
CAPN3-201ENST00000318023 CYB5RLQ6IPT4 315 aa14.71□□□□□ -0.05
CAPN3-201ENST00000318023 TOP2BQ02880 1626 aa14.69□□□□□ -0.06
CAPN3-201ENST00000318023 GRIN2BQ13224 1484 aa14.67□□□□□ -0.06
CAPN3-201ENST00000318023 NEUROD1Q13562 356 aa14.67□□□□□ -0.06
CAPN3-201ENST00000318023 RUSC2Q8N2Y8 1516 aa14.66□□□□□ -0.06
CAPN3-201ENST00000318023 CHIC1Q5VXU3 224 aa14.66□□□□□ -0.06
CAPN3-201ENST00000318023 ABCA10Q8WWZ4 1543 aa14.65□□□□□ -0.06
CAPN3-201ENST00000318023 ACIN1Q9UKV3 1341 aaKnown RBP14.65□□□□□ -0.06
CAPN3-201ENST00000318023 GTF3C3Q9Y5Q9 886 aa14.64□□□□□ -0.07
CAPN3-201ENST00000318023 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
CAPN3-201ENST00000318023 BIVM-ERCC5R4GMW8 1640 aa14.59□□□□□ -0.07
CAPN3-201ENST00000318023 IGF1RP08069 1367 aa14.58□□□□□ -0.08
CAPN3-201ENST00000318023 CHD1O14646 1710 aa14.56□□□□□ -0.08
CAPN3-201ENST00000318023 SYNJ2O15056 1496 aa14.55□□□□□ -0.08
CAPN3-201ENST00000318023 MAGI1Q96QZ7 1491 aaPredicted RBP14.54□□□□□ -0.08
CAPN3-201ENST00000318023 CARMIL1Q5VZK9 1371 aa14.53□□□□□ -0.08
CAPN3-201ENST00000318023 ABCA5Q8WWZ7 1642 aa14.52□□□□□ -0.08
CAPN3-201ENST00000318023 P3H3Q8IVL6 736 aa14.51□□□□□ -0.09
CAPN3-201ENST00000318023 FHAD1B1AJZ9 1412 aa14.51□□□□□ -0.09
CAPN3-201ENST00000318023 PBRM1Q86U86 1689 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms