RNA–Protein interactions for RNA: ENST00000315948.10

LYSMD3-201, Transcript of LysM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LYSMD3, Length 4,259 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-201ENST00000315948 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
LYSMD3-201ENST00000315948 CCDC180Q9P1Z9 1646 aa13.19□□□□□ -0.3
LYSMD3-201ENST00000315948 DCAF8L2P0C7V8 631 aa13.18□□□□□ -0.3
LYSMD3-201ENST00000315948 SHROOM4Q9ULL8 1493 aa13.15□□□□□ -0.3
LYSMD3-201ENST00000315948 ZCCHC6Q5VYS8 1495 aaKnown RBP12.99□□□□□ -0.33
LYSMD3-201ENST00000315948 ABCC9O60706 1549 aa12.83□□□□□ -0.36
LYSMD3-201ENST00000315948 SUPT5HO00267 1087 aaKnown RBP12.67□□□□□ -0.38
LYSMD3-201ENST00000315948 DCAF1Q9Y4B6 1507 aa12.56□□□□□ -0.4
LYSMD3-201ENST00000315948 SCRIBQ14160 1630 aa12.52□□□□□ -0.41
LYSMD3-201ENST00000315948 NACADO15069 1562 aa12.33□□□□□ -0.44
LYSMD3-201ENST00000315948 MYO15BQ96JP2 1530 aa12.31□□□□□ -0.44
LYSMD3-201ENST00000315948 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
LYSMD3-201ENST00000315948 RB1CC1Q8TDY2 1594 aa12.24□□□□□ -0.45
LYSMD3-201ENST00000315948 CECR2Q9BXF3 1484 aa12.22□□□□□ -0.45
LYSMD3-201ENST00000315948 RSF1Q96T23 1441 aaPredicted RBP12.15□□□□□ -0.46
LYSMD3-201ENST00000315948 UNC13AQ9UPW8 1703 aa12.11□□□□□ -0.47
LYSMD3-201ENST00000315948 MROH2BQ7Z745 1585 aa12.08□□□□□ -0.48
LYSMD3-201ENST00000315948 CHIC1Q5VXU3 224 aa12.04□□□□□ -0.48
LYSMD3-201ENST00000315948 BICRAQ9NZM4 1560 aa12.02□□□□□ -0.49
LYSMD3-201ENST00000315948 WIZO95785 1651 aa11.99□□□□□ -0.49
LYSMD3-201ENST00000315948 BAZ1AQ9NRL2 1556 aaPredicted RBP11.86□□□□□ -0.51
LYSMD3-201ENST00000315948 SMARCA4P51532 1647 aa11.85□□□□□ -0.51
LYSMD3-201ENST00000315948 EHMT2Q96KQ7 1210 aa11.8□□□□□ -0.52
LYSMD3-201ENST00000315948 LOC105371045A0A1W2PR82 267 aa11.79□□□□□ -0.52
LYSMD3-201ENST00000315948 FAM9AQ8IZU1 332 aaPredicted RBP11.77□□□□□ -0.53
LYSMD3-201ENST00000315948 CCDC88BA6NC98 1476 aa11.73□□□□□ -0.53
LYSMD3-201ENST00000315948 TRIM41Q8WV44 630 aa11.73□□□□□ -0.53
LYSMD3-201ENST00000315948 TOP2AP11388 1531 aaKnown RBP11.7□□□□□ -0.54
LYSMD3-201ENST00000315948 ATAD2BQ9ULI0 1458 aa11.68□□□□□ -0.54
LYSMD3-201ENST00000315948 SMARCA2P51531 1590 aa11.67□□□□□ -0.54
LYSMD3-201ENST00000315948 ABCC8Q09428 1581 aa11.63□□□□□ -0.55
LYSMD3-201ENST00000315948 EIF4G1Q04637 1599 aaKnown RBP11.63□□□□□ -0.55
LYSMD3-201ENST00000315948 BAZ1BQ9UIG0 1483 aaKnown RBP11.62□□□□□ -0.55
LYSMD3-201ENST00000315948 PEG3Q9GZU2 1588 aa11.57□□□□□ -0.56
LYSMD3-201ENST00000315948 DNAJC5BQ9UF47 199 aa11.57□□□□□ -0.56
LYSMD3-201ENST00000315948 NCAPD3P42695 1498 aa11.47□□□□□ -0.57
LYSMD3-201ENST00000315948 CC2D2AQ9P2K1 1620 aa11.46□□□□□ -0.57
LYSMD3-201ENST00000315948 SOGA1O94964 1423 aa11.46□□□□□ -0.58
LYSMD3-201ENST00000315948 RUSC2Q8N2Y8 1516 aa11.45□□□□□ -0.58
LYSMD3-201ENST00000315948 WRNQ14191 1432 aaPredicted RBP eCLIP11.39□□□□□ -0.59
LYSMD3-201ENST00000315948 HMGXB3Q12766 1538 aa11.39□□□□□ -0.59
LYSMD3-201ENST00000315948 SYNJ1O43426 1573 aa11.39□□□□□ -0.59
LYSMD3-201ENST00000315948 PPARGC1BQ86YN6 1023 aaKnown RBP11.37□□□□□ -0.59
LYSMD3-201ENST00000315948 NESP48681 1621 aa11.33□□□□□ -0.6
LYSMD3-201ENST00000315948 PCGF6Q9BYE7 350 aa11.32□□□□□ -0.6
LYSMD3-201ENST00000315948 RANGAP1P46060 587 aaPredicted RBP11.31□□□□□ -0.6
LYSMD3-201ENST00000315948 CFTRP13569 1480 aa11.29□□□□□ -0.6
LYSMD3-201ENST00000315948 CSRNP3Q8WYN3 585 aa11.27□□□□□ -0.6
LYSMD3-201ENST00000315948 TTBK1Q5TCY1 1321 aaPredicted RBP11.27□□□□□ -0.6
LYSMD3-201ENST00000315948 CADPSQ9ULU8 1353 aa11.27□□□□□ -0.61
LYSMD3-201ENST00000315948 CUX1P39880 1505 aa11.26□□□□□ -0.61
LYSMD3-201ENST00000315948 UBTFP17480 764 aaKnown RBP11.25□□□□□ -0.61
LYSMD3-201ENST00000315948 TOP2BQ02880 1626 aa11.19□□□□□ -0.62
LYSMD3-201ENST00000315948 FANCD2Q9BXW9 1451 aa11.17□□□□□ -0.62
LYSMD3-201ENST00000315948 RAPGEF2Q9Y4G8 1499 aa11.16□□□□□ -0.62
LYSMD3-201ENST00000315948 CEP162Q5TB80 1403 aa11.14□□□□□ -0.63
LYSMD3-201ENST00000315948 BIVM-ERCC5R4GMW8 1640 aa11.12□□□□□ -0.63
LYSMD3-201ENST00000315948 RAD54L2Q9Y4B4 1467 aa11.12□□□□□ -0.63
LYSMD3-201ENST00000315948 FGD5Q6ZNL6 1462 aa11.11□□□□□ -0.63
LYSMD3-201ENST00000315948 CUX2O14529 1486 aa11.09□□□□□ -0.63
LYSMD3-201ENST00000315948 GOLGA3Q08378 1498 aa11.08□□□□□ -0.64
LYSMD3-201ENST00000315948 EEA1Q15075 1411 aa11.08□□□□□ -0.64
LYSMD3-201ENST00000315948 TNIKQ9UKE5 1360 aa11.08□□□□□ -0.64
LYSMD3-201ENST00000315948 URB2Q14146 1524 aaKnown RBP11.06□□□□□ -0.64
LYSMD3-201ENST00000315948 CEP164Q9UPV0 1460 aa11.05□□□□□ -0.64
LYSMD3-201ENST00000315948 TRIM26Q12899 539 aaPredicted RBP11.05□□□□□ -0.64
LYSMD3-201ENST00000315948 TOPBP1Q92547 1522 aa11.05□□□□□ -0.64
LYSMD3-201ENST00000315948 KIF27Q86VH2 1401 aa11.04□□□□□ -0.64
LYSMD3-201ENST00000315948 PRDM2Q13029 1718 aa11.04□□□□□ -0.64
LYSMD3-201ENST00000315948 POLA1P09884 1462 aaPredicted RBP11.04□□□□□ -0.64
LYSMD3-201ENST00000315948 IGF1RP08069 1367 aa11.03□□□□□ -0.64
LYSMD3-201ENST00000315948 TDRD9Q8NDG6 1382 aaKnown RBP11.03□□□□□ -0.64
LYSMD3-201ENST00000315948 KIF21AQ7Z4S6 1674 aa11.02□□□□□ -0.64
LYSMD3-201ENST00000315948 PRXQ9BXM0 1461 aa11.01□□□□□ -0.65
LYSMD3-201ENST00000315948 CLIP1P30622 1438 aa11□□□□□ -0.65
LYSMD3-201ENST00000315948 LAMC3Q9Y6N6 1575 aa11□□□□□ -0.65
LYSMD3-201ENST00000315948 KIF21BO75037 1637 aa11□□□□□ -0.65
LYSMD3-201ENST00000315948 PDS5BQ9NTI5 1447 aa10.98□□□□□ -0.65
LYSMD3-201ENST00000315948 P3H3Q8IVL6 736 aa10.98□□□□□ -0.65
LYSMD3-201ENST00000315948 DNMBPQ6XZF7 1577 aa10.98□□□□□ -0.65
LYSMD3-201ENST00000315948 CARMIL1Q5VZK9 1371 aa10.96□□□□□ -0.66
LYSMD3-201ENST00000315948 HRCP23327 699 aa10.92□□□□□ -0.66
LYSMD3-201ENST00000315948 AQRO60306 1485 aaKnown RBP eCLIP10.92□□□□□ -0.662e-7■■■□□ 15.3
LYSMD3-201ENST00000315948 ARAP1Q96P48 1450 aa10.91□□□□□ -0.66
LYSMD3-201ENST00000315948 ABCA10Q8WWZ4 1543 aa10.91□□□□□ -0.66
LYSMD3-201ENST00000315948 ZNF608Q9ULD9 1512 aaPredicted RBP10.89□□□□□ -0.67
LYSMD3-201ENST00000315948 KANK4Q5T7N3 995 aaPredicted RBP10.89□□□□□ -0.67
LYSMD3-201ENST00000315948 ERCC6Q03468 1493 aa10.88□□□□□ -0.67
LYSMD3-201ENST00000315948 ERICH3Q5RHP9 1530 aa10.88□□□□□ -0.67
LYSMD3-201ENST00000315948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.87□□□□□ -0.67
LYSMD3-201ENST00000315948 VPS8Q8N3P4 1428 aa10.86□□□□□ -0.67
LYSMD3-201ENST00000315948 ARHGAP35Q9NRY4 1499 aa10.86□□□□□ -0.67
LYSMD3-201ENST00000315948 ATP1B4Q9UN42 357 aaPredicted RBP10.86□□□□□ -0.67
LYSMD3-201ENST00000315948 GAPVD1Q14C86 1478 aa10.85□□□□□ -0.67
LYSMD3-201ENST00000315948 MRC2Q9UBG0 1479 aa10.85□□□□□ -0.67
LYSMD3-201ENST00000315948 TARBP1Q13395 1621 aaKnown RBP10.83□□□□□ -0.68
LYSMD3-201ENST00000315948 HNRNPUL2Q1KMD3 747 aaKnown RBP10.82□□□□□ -0.68
LYSMD3-201ENST00000315948 WDR97A6NE52 1622 aa10.81□□□□□ -0.68
LYSMD3-201ENST00000315948 FHOD3Q2V2M9 1422 aa10.81□□□□□ -0.68
LYSMD3-201ENST00000315948 APLP2Q06481 763 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms