RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 NISCHQ9Y2I1 1504 aa26.75■■□□□ 1.87
RNF4-201ENST00000314289 CCDC180Q9P1Z9 1646 aa22.85■■□□□ 1.25
RNF4-201ENST00000314289 SHROOM4Q9ULL8 1493 aa22.73■■□□□ 1.23
RNF4-201ENST00000314289 DCAF8L2P0C7V8 631 aa22.61■■□□□ 1.21
RNF4-201ENST00000314289 ZCCHC6Q5VYS8 1495 aaKnown RBP22.52■■□□□ 1.19
RNF4-201ENST00000314289 SUPT5HO00267 1087 aaKnown RBP22.07■■□□□ 1.12
RNF4-201ENST00000314289 DCAF1Q9Y4B6 1507 aa21.83■■□□□ 1.09
RNF4-201ENST00000314289 ABCC9O60706 1549 aa21.8■■□□□ 1.08
RNF4-201ENST00000314289 SCRIBQ14160 1630 aa21.53■■□□□ 1.04
RNF4-201ENST00000314289 MYO15BQ96JP2 1530 aa21.34■■□□□ 1.01
RNF4-201ENST00000314289 NACADO15069 1562 aa21.28■■□□□ 1
RNF4-201ENST00000314289 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
RNF4-201ENST00000314289 RB1CC1Q8TDY2 1594 aa21.06■□□□□ 0.96
RNF4-201ENST00000314289 RSF1Q96T23 1441 aaPredicted RBP21.04■□□□□ 0.96
RNF4-201ENST00000314289 CECR2Q9BXF3 1484 aa21■□□□□ 0.95
RNF4-201ENST00000314289 MROH2BQ7Z745 1585 aa20.83■□□□□ 0.93
RNF4-201ENST00000314289 PABPN1Q86U42 306 aaKnown RBP eCLIP20.83■□□□□ 0.92
RNF4-201ENST00000314289 UNC13AQ9UPW8 1703 aa20.76■□□□□ 0.91
RNF4-201ENST00000314289 WIZO95785 1651 aa20.71■□□□□ 0.91
RNF4-201ENST00000314289 LOC105371045A0A1W2PR82 267 aa20.59■□□□□ 0.89
RNF4-201ENST00000314289 BAZ1AQ9NRL2 1556 aaPredicted RBP20.57■□□□□ 0.88
RNF4-201ENST00000314289 BICRAQ9NZM4 1560 aa20.53■□□□□ 0.88
RNF4-201ENST00000314289 TRIM41Q8WV44 630 aa20.52■□□□□ 0.87
RNF4-201ENST00000314289 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
RNF4-201ENST00000314289 FAM9AQ8IZU1 332 aaPredicted RBP20.45■□□□□ 0.86
RNF4-201ENST00000314289 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
RNF4-201ENST00000314289 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
RNF4-201ENST00000314289 CCDC88BA6NC98 1476 aa20.27■□□□□ 0.84
RNF4-201ENST00000314289 SMARCA2P51531 1590 aa20.2■□□□□ 0.82
RNF4-201ENST00000314289 ABCC8Q09428 1581 aa20.13■□□□□ 0.81
RNF4-201ENST00000314289 EIF4G1Q04637 1599 aaKnown RBP20.11■□□□□ 0.81
RNF4-201ENST00000314289 PCGF6Q9BYE7 350 aa20.09■□□□□ 0.81
RNF4-201ENST00000314289 ATAD2BQ9ULI0 1458 aa20.08■□□□□ 0.8
RNF4-201ENST00000314289 BAZ1BQ9UIG0 1483 aaKnown RBP20.02■□□□□ 0.79
RNF4-201ENST00000314289 PEG3Q9GZU2 1588 aa20.01■□□□□ 0.79
RNF4-201ENST00000314289 HRCP23327 699 aa19.86■□□□□ 0.77
RNF4-201ENST00000314289 SOGA1O94964 1423 aa19.85■□□□□ 0.77
RNF4-201ENST00000314289 RUSC2Q8N2Y8 1516 aa19.79■□□□□ 0.76
RNF4-201ENST00000314289 WRNQ14191 1432 aaPredicted RBP eCLIP19.79■□□□□ 0.762e-6■■■■■ 29.9
RNF4-201ENST00000314289 PPARGC1BQ86YN6 1023 aaKnown RBP19.78■□□□□ 0.76
RNF4-201ENST00000314289 NCAPD3P42695 1498 aa19.72■□□□□ 0.75
RNF4-201ENST00000314289 SYNJ1O43426 1573 aa19.7■□□□□ 0.74
RNF4-201ENST00000314289 TRIM26Q12899 539 aaPredicted RBP19.69■□□□□ 0.74
RNF4-201ENST00000314289 CSRNP3Q8WYN3 585 aa19.67■□□□□ 0.74
RNF4-201ENST00000314289 UBTFP17480 764 aaKnown RBP19.65■□□□□ 0.74
RNF4-201ENST00000314289 HMGXB3Q12766 1538 aa19.64■□□□□ 0.73
RNF4-201ENST00000314289 TTBK1Q5TCY1 1321 aaPredicted RBP19.59■□□□□ 0.73
RNF4-201ENST00000314289 CC2D2AQ9P2K1 1620 aa19.54■□□□□ 0.72
RNF4-201ENST00000314289 RANGAP1P46060 587 aaPredicted RBP19.53■□□□□ 0.72
RNF4-201ENST00000314289 EEA1Q15075 1411 aa19.5■□□□□ 0.71
RNF4-201ENST00000314289 CEP162Q5TB80 1403 aa19.5■□□□□ 0.71
RNF4-201ENST00000314289 CFTRP13569 1480 aa19.46■□□□□ 0.71
RNF4-201ENST00000314289 TNIKQ9UKE5 1360 aa19.44■□□□□ 0.7
RNF4-201ENST00000314289 TOP2BQ02880 1626 aa19.44■□□□□ 0.7
RNF4-201ENST00000314289 GOLGA3Q08378 1498 aa19.42■□□□□ 0.7
RNF4-201ENST00000314289 CUX1P39880 1505 aa19.41■□□□□ 0.7
RNF4-201ENST00000314289 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
RNF4-201ENST00000314289 CADPSQ9ULU8 1353 aa19.37■□□□□ 0.69
RNF4-201ENST00000314289 RAPGEF2Q9Y4G8 1499 aa19.36■□□□□ 0.69
RNF4-201ENST00000314289 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
RNF4-201ENST00000314289 BIVM-ERCC5R4GMW8 1640 aa19.34■□□□□ 0.69
RNF4-201ENST00000314289 NESP48681 1621 aa19.28■□□□□ 0.68
RNF4-201ENST00000314289 KIF21BO75037 1637 aa19.27■□□□□ 0.68
RNF4-201ENST00000314289 CLIP1P30622 1438 aa19.24■□□□□ 0.67
RNF4-201ENST00000314289 KIF27Q86VH2 1401 aa19.2■□□□□ 0.66
RNF4-201ENST00000314289 FANCD2Q9BXW9 1451 aa19.19■□□□□ 0.66
RNF4-201ENST00000314289 PRDM2Q13029 1718 aa19.18■□□□□ 0.66
RNF4-201ENST00000314289 CUX2O14529 1486 aa19.16■□□□□ 0.66
RNF4-201ENST00000314289 FGD5Q6ZNL6 1462 aa19.15■□□□□ 0.66
RNF4-201ENST00000314289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.14■□□□□ 0.66
RNF4-201ENST00000314289 PRXQ9BXM0 1461 aa19.14■□□□□ 0.66
RNF4-201ENST00000314289 RAD54L2Q9Y4B4 1467 aa19.07■□□□□ 0.64
RNF4-201ENST00000314289 IGF1RP08069 1367 aa19.06■□□□□ 0.64
RNF4-201ENST00000314289 APLP2Q06481 763 aa19.05■□□□□ 0.64
RNF4-201ENST00000314289 VPS8Q8N3P4 1428 aa19.05■□□□□ 0.64
RNF4-201ENST00000314289 ERICH3Q5RHP9 1530 aa19.04■□□□□ 0.64
RNF4-201ENST00000314289 CCER1Q8TC90 406 aaPredicted RBP19.01■□□□□ 0.63
RNF4-201ENST00000314289 TOPBP1Q92547 1522 aa19■□□□□ 0.63
RNF4-201ENST00000314289 CARMIL1Q5VZK9 1371 aa18.98■□□□□ 0.63
RNF4-201ENST00000314289 POLA1P09884 1462 aaPredicted RBP18.98■□□□□ 0.63
RNF4-201ENST00000314289 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
RNF4-201ENST00000314289 ZEB1P37275 1124 aaPredicted RBP18.96■□□□□ 0.63
RNF4-201ENST00000314289 DNMBPQ6XZF7 1577 aa18.96■□□□□ 0.63
RNF4-201ENST00000314289 ARAP1Q96P48 1450 aa18.95■□□□□ 0.62
RNF4-201ENST00000314289 URB2Q14146 1524 aaKnown RBP18.94■□□□□ 0.62
RNF4-201ENST00000314289 LAMC3Q9Y6N6 1575 aa18.93■□□□□ 0.62
RNF4-201ENST00000314289 P3H3Q8IVL6 736 aa18.92■□□□□ 0.62
RNF4-201ENST00000314289 KANK4Q5T7N3 995 aaPredicted RBP18.9■□□□□ 0.62
RNF4-201ENST00000314289 TDRD9Q8NDG6 1382 aaKnown RBP18.9■□□□□ 0.62
RNF4-201ENST00000314289 PDS5BQ9NTI5 1447 aa18.89■□□□□ 0.61
RNF4-201ENST00000314289 ARHGAP35Q9NRY4 1499 aa18.88■□□□□ 0.61
RNF4-201ENST00000314289 KIF21AQ7Z4S6 1674 aa18.86■□□□□ 0.61
RNF4-201ENST00000314289 ABCA10Q8WWZ4 1543 aa18.85■□□□□ 0.61
RNF4-201ENST00000314289 ATP1B4Q9UN42 357 aaPredicted RBP18.82■□□□□ 0.6
RNF4-201ENST00000314289 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
RNF4-201ENST00000314289 ITGAEP38570 1179 aa18.7■□□□□ 0.58
RNF4-201ENST00000314289 FHOD3Q2V2M9 1422 aa18.7■□□□□ 0.58
RNF4-201ENST00000314289 WDR97A6NE52 1622 aa18.67■□□□□ 0.58
RNF4-201ENST00000314289 AQRO60306 1485 aaKnown RBP eCLIP18.67■□□□□ 0.587e-8■■■■■ 35.3
RNF4-201ENST00000314289 SCAF1Q9H7N4 1312 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms