RNA–Protein interactions for RNA: ENST00000305409.2

SCG2-201, Transcript of secretogranin II, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCG2, Length 2,576 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCG2-201ENST00000305409 NISCHQ9Y2I1 1504 aa24.71■■□□□ 1.55
SCG2-201ENST00000305409 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
SCG2-201ENST00000305409 SHROOM4Q9ULL8 1493 aa20.93■□□□□ 0.94
SCG2-201ENST00000305409 DCAF8L2P0C7V8 631 aa20.88■□□□□ 0.93
SCG2-201ENST00000305409 ZCCHC6Q5VYS8 1495 aaKnown RBP20.79■□□□□ 0.92
SCG2-201ENST00000305409 SUPT5HO00267 1087 aaKnown RBP20.3■□□□□ 0.84
SCG2-201ENST00000305409 ABCC9O60706 1549 aa20.19■□□□□ 0.82
SCG2-201ENST00000305409 DCAF1Q9Y4B6 1507 aa20.19■□□□□ 0.82
SCG2-201ENST00000305409 SCRIBQ14160 1630 aa19.87■□□□□ 0.77
SCG2-201ENST00000305409 MYO15BQ96JP2 1530 aa19.76■□□□□ 0.75
SCG2-201ENST00000305409 NACADO15069 1562 aa19.7■□□□□ 0.74
SCG2-201ENST00000305409 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
SCG2-201ENST00000305409 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
SCG2-201ENST00000305409 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
SCG2-201ENST00000305409 CECR2Q9BXF3 1484 aa19.39■□□□□ 0.7
SCG2-201ENST00000305409 PABPN1Q86U42 306 aaKnown RBP eCLIP19.3■□□□□ 0.68
SCG2-201ENST00000305409 MROH2BQ7Z745 1585 aa19.24■□□□□ 0.67
SCG2-201ENST00000305409 UNC13AQ9UPW8 1703 aa19.15■□□□□ 0.66
SCG2-201ENST00000305409 WIZO95785 1651 aa19.08■□□□□ 0.65
SCG2-201ENST00000305409 BICRAQ9NZM4 1560 aa19■□□□□ 0.63
SCG2-201ENST00000305409 BAZ1AQ9NRL2 1556 aaPredicted RBP18.99■□□□□ 0.63
SCG2-201ENST00000305409 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
SCG2-201ENST00000305409 SMARCA4P51532 1647 aa18.9■□□□□ 0.62
SCG2-201ENST00000305409 TRIM41Q8WV44 630 aa18.88■□□□□ 0.61
SCG2-201ENST00000305409 FAM9AQ8IZU1 332 aaPredicted RBP18.81■□□□□ 0.6
SCG2-201ENST00000305409 EHMT2Q96KQ7 1210 aa18.74■□□□□ 0.59
SCG2-201ENST00000305409 TOP2AP11388 1531 aaKnown RBP18.73■□□□□ 0.59
SCG2-201ENST00000305409 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
SCG2-201ENST00000305409 SMARCA2P51531 1590 aa18.63■□□□□ 0.57
SCG2-201ENST00000305409 ATAD2BQ9ULI0 1458 aa18.58■□□□□ 0.57
SCG2-201ENST00000305409 ABCC8Q09428 1581 aa18.53■□□□□ 0.56
SCG2-201ENST00000305409 EIF4G1Q04637 1599 aaKnown RBP18.53■□□□□ 0.56
SCG2-201ENST00000305409 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
SCG2-201ENST00000305409 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
SCG2-201ENST00000305409 PCGF6Q9BYE7 350 aa18.39■□□□□ 0.53
SCG2-201ENST00000305409 SOGA1O94964 1423 aa18.3■□□□□ 0.52
SCG2-201ENST00000305409 NCAPD3P42695 1498 aa18.27■□□□□ 0.52
SCG2-201ENST00000305409 WRNQ14191 1432 aaPredicted RBP eCLIP18.26■□□□□ 0.51
SCG2-201ENST00000305409 RUSC2Q8N2Y8 1516 aa18.24■□□□□ 0.51
SCG2-201ENST00000305409 HMGXB3Q12766 1538 aa18.17■□□□□ 0.5
SCG2-201ENST00000305409 PPARGC1BQ86YN6 1023 aaKnown RBP18.16■□□□□ 0.5
SCG2-201ENST00000305409 SYNJ1O43426 1573 aa18.16■□□□□ 0.5
SCG2-201ENST00000305409 CSRNP3Q8WYN3 585 aa18.14■□□□□ 0.49
SCG2-201ENST00000305409 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
SCG2-201ENST00000305409 UBTFP17480 764 aaKnown RBP18.09■□□□□ 0.49
SCG2-201ENST00000305409 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
SCG2-201ENST00000305409 CFTRP13569 1480 aa18■□□□□ 0.47
SCG2-201ENST00000305409 TTBK1Q5TCY1 1321 aaPredicted RBP17.98■□□□□ 0.47
SCG2-201ENST00000305409 DNAJC5BQ9UF47 199 aa17.98■□□□□ 0.47
SCG2-201ENST00000305409 EEA1Q15075 1411 aa17.98■□□□□ 0.47
SCG2-201ENST00000305409 RANGAP1P46060 587 aaPredicted RBP17.96■□□□□ 0.47
SCG2-201ENST00000305409 HRCP23327 699 aa17.95■□□□□ 0.46
SCG2-201ENST00000305409 CADPSQ9ULU8 1353 aa17.94■□□□□ 0.46
SCG2-201ENST00000305409 CEP162Q5TB80 1403 aa17.94■□□□□ 0.46
SCG2-201ENST00000305409 TOP2BQ02880 1626 aa17.93■□□□□ 0.46
SCG2-201ENST00000305409 CUX1P39880 1505 aa17.93■□□□□ 0.46
SCG2-201ENST00000305409 TNIKQ9UKE5 1360 aa17.92■□□□□ 0.46
SCG2-201ENST00000305409 GOLGA3Q08378 1498 aa17.89■□□□□ 0.45
SCG2-201ENST00000305409 RAPGEF2Q9Y4G8 1499 aa17.84■□□□□ 0.45
SCG2-201ENST00000305409 NESP48681 1621 aa17.84■□□□□ 0.45
SCG2-201ENST00000305409 CEP164Q9UPV0 1460 aa17.83■□□□□ 0.44
SCG2-201ENST00000305409 BIVM-ERCC5R4GMW8 1640 aa17.83■□□□□ 0.44
SCG2-201ENST00000305409 FANCD2Q9BXW9 1451 aa17.76■□□□□ 0.43
SCG2-201ENST00000305409 KIF21BO75037 1637 aa17.74■□□□□ 0.43
SCG2-201ENST00000305409 KIF27Q86VH2 1401 aa17.73■□□□□ 0.43
SCG2-201ENST00000305409 CLIP1P30622 1438 aa17.72■□□□□ 0.43
SCG2-201ENST00000305409 CUX2O14529 1486 aa17.69■□□□□ 0.42
SCG2-201ENST00000305409 FGD5Q6ZNL6 1462 aa17.69■□□□□ 0.42
SCG2-201ENST00000305409 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
SCG2-201ENST00000305409 PRXQ9BXM0 1461 aa17.67■□□□□ 0.42
SCG2-201ENST00000305409 RAD54L2Q9Y4B4 1467 aa17.63■□□□□ 0.41
SCG2-201ENST00000305409 IGF1RP08069 1367 aa17.62■□□□□ 0.41
SCG2-201ENST00000305409 TOPBP1Q92547 1522 aa17.57■□□□□ 0.4
SCG2-201ENST00000305409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.55■□□□□ 0.4
SCG2-201ENST00000305409 ERICH3Q5RHP9 1530 aa17.54■□□□□ 0.4
SCG2-201ENST00000305409 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
SCG2-201ENST00000305409 CARMIL1Q5VZK9 1371 aa17.54■□□□□ 0.4
SCG2-201ENST00000305409 VPS8Q8N3P4 1428 aa17.53■□□□□ 0.4
SCG2-201ENST00000305409 APLP2Q06481 763 aa17.53■□□□□ 0.4
SCG2-201ENST00000305409 URB2Q14146 1524 aaKnown RBP17.53■□□□□ 0.4
SCG2-201ENST00000305409 DNMBPQ6XZF7 1577 aa17.52■□□□□ 0.4
SCG2-201ENST00000305409 LAMC3Q9Y6N6 1575 aa17.52■□□□□ 0.4
SCG2-201ENST00000305409 PDS5BQ9NTI5 1447 aa17.5■□□□□ 0.39
SCG2-201ENST00000305409 TDRD9Q8NDG6 1382 aaKnown RBP17.48■□□□□ 0.39
SCG2-201ENST00000305409 ARAP1Q96P48 1450 aa17.46■□□□□ 0.39
SCG2-201ENST00000305409 P3H3Q8IVL6 736 aa17.45■□□□□ 0.38
SCG2-201ENST00000305409 HNRNPUL2Q1KMD3 747 aaKnown RBP17.43■□□□□ 0.38
SCG2-201ENST00000305409 ABCA10Q8WWZ4 1543 aa17.43■□□□□ 0.38
SCG2-201ENST00000305409 CCER1Q8TC90 406 aaPredicted RBP17.42■□□□□ 0.38
SCG2-201ENST00000305409 KIF21AQ7Z4S6 1674 aa17.42■□□□□ 0.38
SCG2-201ENST00000305409 KANK4Q5T7N3 995 aaPredicted RBP17.41■□□□□ 0.38
SCG2-201ENST00000305409 ARHGAP35Q9NRY4 1499 aa17.4■□□□□ 0.38
SCG2-201ENST00000305409 ZEB1P37275 1124 aaPredicted RBP17.36■□□□□ 0.37
SCG2-201ENST00000305409 ATP1B4Q9UN42 357 aaPredicted RBP17.34■□□□□ 0.37
SCG2-201ENST00000305409 GAPVD1Q14C86 1478 aa17.3■□□□□ 0.36
SCG2-201ENST00000305409 AQRO60306 1485 aaKnown RBP eCLIP17.27■□□□□ 0.36
SCG2-201ENST00000305409 FHOD3Q2V2M9 1422 aa17.25■□□□□ 0.35
SCG2-201ENST00000305409 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
SCG2-201ENST00000305409 WDR97A6NE52 1622 aa17.23■□□□□ 0.35
SCG2-201ENST00000305409 ABCA5Q8WWZ7 1642 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms