RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 NISCHQ9Y2I1 1504 aa15.64■□□□□ 0.09
CD44-204ENST00000279452 CCDC180Q9P1Z9 1646 aa13.88□□□□□ -0.19
CD44-204ENST00000279452 ABCC9O60706 1549 aa13.62□□□□□ -0.23
CD44-204ENST00000279452 DCAF8L2P0C7V8 631 aa13.19□□□□□ -0.3
CD44-204ENST00000279452 RB1CC1Q8TDY2 1594 aa13.08□□□□□ -0.32
CD44-204ENST00000279452 ZCCHC6Q5VYS8 1495 aaKnown RBP13.05□□□□□ -0.32
CD44-204ENST00000279452 NACADO15069 1562 aa13.05□□□□□ -0.32
CD44-204ENST00000279452 AEBP2Q6ZN18 517 aaPredicted RBP12.95□□□□□ -0.34
CD44-204ENST00000279452 MYO15BQ96JP2 1530 aa12.92□□□□□ -0.34
CD44-204ENST00000279452 DCAF1Q9Y4B6 1507 aa12.9□□□□□ -0.34
CD44-204ENST00000279452 SCRIBQ14160 1630 aa12.75□□□□□ -0.37
CD44-204ENST00000279452 PABPN1Q86U42 306 aaKnown RBP eCLIP12.74□□□□□ -0.37
CD44-204ENST00000279452 UNC13AQ9UPW8 1703 aa12.72□□□□□ -0.37
CD44-204ENST00000279452 BICRAQ9NZM4 1560 aa12.63□□□□□ -0.39
CD44-204ENST00000279452 SHROOM4Q9ULL8 1493 aa12.51□□□□□ -0.41
CD44-204ENST00000279452 DNAJC5BQ9UF47 199 aa12.38□□□□□ -0.43
CD44-204ENST00000279452 EIF4G1Q04637 1599 aaKnown RBP12.34□□□□□ -0.43
CD44-204ENST00000279452 CC2D2AQ9P2K1 1620 aa12.28□□□□□ -0.44
CD44-204ENST00000279452 CHIC1Q5VXU3 224 aa12.23□□□□□ -0.45
CD44-204ENST00000279452 CECR2Q9BXF3 1484 aa12.21□□□□□ -0.45
CD44-204ENST00000279452 SMARCA4P51532 1647 aa12.15□□□□□ -0.47
CD44-204ENST00000279452 BAZ1AQ9NRL2 1556 aaPredicted RBP12.14□□□□□ -0.47
CD44-204ENST00000279452 MROH2BQ7Z745 1585 aa12.07□□□□□ -0.48
CD44-204ENST00000279452 SMARCA2P51531 1590 aa12.06□□□□□ -0.48
CD44-204ENST00000279452 ATAD2BQ9ULI0 1458 aa12.06□□□□□ -0.48
CD44-204ENST00000279452 NCAPD3P42695 1498 aa12.02□□□□□ -0.49
CD44-204ENST00000279452 BAZ1BQ9UIG0 1483 aaKnown RBP12.02□□□□□ -0.49
CD44-204ENST00000279452 HMGXB3Q12766 1538 aa11.99□□□□□ -0.49
CD44-204ENST00000279452 PEG3Q9GZU2 1588 aa11.97□□□□□ -0.49
CD44-204ENST00000279452 WIZO95785 1651 aa11.96□□□□□ -0.5
CD44-204ENST00000279452 RSF1Q96T23 1441 aaPredicted RBP11.94□□□□□ -0.5
CD44-204ENST00000279452 TOP2AP11388 1531 aaKnown RBP11.83□□□□□ -0.52
CD44-204ENST00000279452 SUPT5HO00267 1087 aaKnown RBP11.78□□□□□ -0.52
CD44-204ENST00000279452 ERCC6Q03468 1493 aa11.77□□□□□ -0.52
CD44-204ENST00000279452 NESP48681 1621 aa11.77□□□□□ -0.53
CD44-204ENST00000279452 LAMC3Q9Y6N6 1575 aa11.72□□□□□ -0.53
CD44-204ENST00000279452 CADPSQ9ULU8 1353 aa11.69□□□□□ -0.54
CD44-204ENST00000279452 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
CD44-204ENST00000279452 PDS5BQ9NTI5 1447 aa11.66□□□□□ -0.54
CD44-204ENST00000279452 CFTRP13569 1480 aa11.63□□□□□ -0.55
CD44-204ENST00000279452 KIF21AQ7Z4S6 1674 aa11.62□□□□□ -0.55
CD44-204ENST00000279452 FANCD2Q9BXW9 1451 aa11.6□□□□□ -0.55
CD44-204ENST00000279452 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
CD44-204ENST00000279452 THOC2Q8NI27 1593 aaKnown RBP11.56□□□□□ -0.56
CD44-204ENST00000279452 MRC2Q9UBG0 1479 aa11.56□□□□□ -0.56
CD44-204ENST00000279452 CUX2O14529 1486 aa11.55□□□□□ -0.56
CD44-204ENST00000279452 PRDM2Q13029 1718 aa11.53□□□□□ -0.56
CD44-204ENST00000279452 WDR62O43379 1518 aa11.49□□□□□ -0.57
CD44-204ENST00000279452 URB2Q14146 1524 aaKnown RBP11.45□□□□□ -0.58
CD44-204ENST00000279452 TOPBP1Q92547 1522 aa11.4□□□□□ -0.58
CD44-204ENST00000279452 ABCC8Q09428 1581 aa11.39□□□□□ -0.59
CD44-204ENST00000279452 DNMBPQ6XZF7 1577 aa11.39□□□□□ -0.59
CD44-204ENST00000279452 CUX1P39880 1505 aa11.33□□□□□ -0.6
CD44-204ENST00000279452 IFT140Q96RY7 1462 aa11.32□□□□□ -0.6
CD44-204ENST00000279452 POLA1P09884 1462 aaPredicted RBP11.31□□□□□ -0.6
CD44-204ENST00000279452 FGD5Q6ZNL6 1462 aa11.31□□□□□ -0.6
CD44-204ENST00000279452 WRNQ14191 1432 aaPredicted RBP eCLIP11.3□□□□□ -0.6
CD44-204ENST00000279452 RAD54L2Q9Y4B4 1467 aa11.28□□□□□ -0.6
CD44-204ENST00000279452 SOGA1O94964 1423 aa11.27□□□□□ -0.6
CD44-204ENST00000279452 ZNF608Q9ULD9 1512 aaPredicted RBP11.27□□□□□ -0.61
CD44-204ENST00000279452 SYNJ1O43426 1573 aa11.25□□□□□ -0.61
CD44-204ENST00000279452 EIF4G3O43432 1585 aaKnown RBP11.24□□□□□ -0.61
CD44-204ENST00000279452 TARBP1Q13395 1621 aaKnown RBP11.24□□□□□ -0.61
CD44-204ENST00000279452 TOP2BQ02880 1626 aa11.24□□□□□ -0.61
CD44-204ENST00000279452 BIVM-ERCC5R4GMW8 1640 aa11.23□□□□□ -0.61
CD44-204ENST00000279452 AQRO60306 1485 aaKnown RBP eCLIP11.22□□□□□ -0.61
CD44-204ENST00000279452 TDRD9Q8NDG6 1382 aaKnown RBP11.22□□□□□ -0.61
CD44-204ENST00000279452 WDR97A6NE52 1622 aa11.17□□□□□ -0.62
CD44-204ENST00000279452 ABCA10Q8WWZ4 1543 aa11.16□□□□□ -0.62
CD44-204ENST00000279452 FBLN2P98095 1184 aa11.15□□□□□ -0.62
CD44-204ENST00000279452 GAPVD1Q14C86 1478 aa11.14□□□□□ -0.63
CD44-204ENST00000279452 GRIN2BQ13224 1484 aa11.13□□□□□ -0.63
CD44-204ENST00000279452 SNAPC4Q5SXM2 1469 aa11.13□□□□□ -0.63
CD44-204ENST00000279452 DNAJC5Q9H3Z4 198 aa11.12□□□□□ -0.63
CD44-204ENST00000279452 ABCA5Q8WWZ7 1642 aa11.12□□□□□ -0.63
CD44-204ENST00000279452 PBRM1Q86U86 1689 aa11.11□□□□□ -0.63
CD44-204ENST00000279452 TRIM41Q8WV44 630 aa11.1□□□□□ -0.63
CD44-204ENST00000279452 MAGI1Q96QZ7 1491 aaPredicted RBP11.09□□□□□ -0.63
CD44-204ENST00000279452 OSCARQ8IYS5 282 aa11.09□□□□□ -0.63
CD44-204ENST00000279452 CHMP7Q8WUX9 453 aaPredicted RBP11.08□□□□□ -0.64
CD44-204ENST00000279452 CHD1O14646 1710 aa11.07□□□□□ -0.64
CD44-204ENST00000279452 KIF27Q86VH2 1401 aa11.06□□□□□ -0.64
CD44-204ENST00000279452 SYNJ2O15056 1496 aa11.06□□□□□ -0.64
CD44-204ENST00000279452 ERICH3Q5RHP9 1530 aa11.04□□□□□ -0.64
CD44-204ENST00000279452 ADAMTS12P58397 1594 aa11.03□□□□□ -0.64
CD44-204ENST00000279452 FHAD1B1AJZ9 1412 aa11.01□□□□□ -0.65
CD44-204ENST00000279452 GRIN2AQ12879 1464 aa11□□□□□ -0.65
CD44-204ENST00000279452 SENP3Q9H4L4 574 aaPredicted RBP10.99□□□□□ -0.65
CD44-204ENST00000279452 CUL7Q14999 1698 aa10.96□□□□□ -0.65
CD44-204ENST00000279452 IGF1RP08069 1367 aa10.96□□□□□ -0.65
CD44-204ENST00000279452 RUSC2Q8N2Y8 1516 aa10.95□□□□□ -0.66
CD44-204ENST00000279452 CLASP1Q7Z460 1538 aa10.94□□□□□ -0.66
CD44-204ENST00000279452 CARMIL1Q5VZK9 1371 aa10.93□□□□□ -0.66
CD44-204ENST00000279452 CEP170Q5SW79 1584 aa10.93□□□□□ -0.66
CD44-204ENST00000279452 FAM9AQ8IZU1 332 aaPredicted RBP10.92□□□□□ -0.66
CD44-204ENST00000279452 ARHGEF11O15085 1522 aa10.92□□□□□ -0.66
CD44-204ENST00000279452 NUP160Q12769 1436 aa10.91□□□□□ -0.66
CD44-204ENST00000279452 RIMBP3CA6NJZ7 1639 aa10.91□□□□□ -0.66
CD44-204ENST00000279452 RIMBP3BA6NNM3 1639 aa10.91□□□□□ -0.66
CD44-204ENST00000279452 RIMBP3Q9UFD9 1639 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms