RNA–Protein interactions for RNA: ENST00000275275.9

PNLDC1-201, Transcript of PARN like, ribonuclease domain containing 1, humanhuman

TSL 1 (best)

Gene PNLDC1, Length 1,921 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNLDC1-201ENST00000275275 NISCHQ9Y2I1 1504 aa33.78■■■■□ 3
PNLDC1-201ENST00000275275 CCDC180Q9P1Z9 1646 aa29.65■■■□□ 2.34
PNLDC1-201ENST00000275275 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
PNLDC1-201ENST00000275275 ABCC9O60706 1549 aa28.25■■■□□ 2.11
PNLDC1-201ENST00000275275 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
PNLDC1-201ENST00000275275 DCAF1Q9Y4B6 1507 aa27.93■■■□□ 2.06
PNLDC1-201ENST00000275275 MYO15BQ96JP2 1530 aa27.7■■■□□ 2.03
PNLDC1-201ENST00000275275 NACADO15069 1562 aa27.63■■■□□ 2.01
PNLDC1-201ENST00000275275 RB1CC1Q8TDY2 1594 aa27.48■■□□□ 1.99
PNLDC1-201ENST00000275275 SHROOM4Q9ULL8 1493 aa27.35■■□□□ 1.97
PNLDC1-201ENST00000275275 SCRIBQ14160 1630 aa27.22■■□□□ 1.95
PNLDC1-201ENST00000275275 UNC13AQ9UPW8 1703 aa27.03■■□□□ 1.92
PNLDC1-201ENST00000275275 BICRAQ9NZM4 1560 aa26.68■■□□□ 1.86
PNLDC1-201ENST00000275275 PABPN1Q86U42 306 aaKnown RBP eCLIP26.54■■□□□ 1.84
PNLDC1-201ENST00000275275 SUPT5HO00267 1087 aaKnown RBP26.31■■□□□ 1.8
PNLDC1-201ENST00000275275 CECR2Q9BXF3 1484 aa26.28■■□□□ 1.8
PNLDC1-201ENST00000275275 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
PNLDC1-201ENST00000275275 MROH2BQ7Z745 1585 aa26.11■■□□□ 1.77
PNLDC1-201ENST00000275275 RSF1Q96T23 1441 aaPredicted RBP26.08■■□□□ 1.77
PNLDC1-201ENST00000275275 SMARCA4P51532 1647 aa26.07■■□□□ 1.76
PNLDC1-201ENST00000275275 WIZO95785 1651 aa25.91■■□□□ 1.74
PNLDC1-201ENST00000275275 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.74
PNLDC1-201ENST00000275275 PEG3Q9GZU2 1588 aa25.75■■□□□ 1.71
PNLDC1-201ENST00000275275 ATAD2BQ9ULI0 1458 aa25.67■■□□□ 1.7
PNLDC1-201ENST00000275275 SMARCA2P51531 1590 aa25.66■■□□□ 1.7
PNLDC1-201ENST00000275275 TOP2AP11388 1531 aaKnown RBP25.61■■□□□ 1.69
PNLDC1-201ENST00000275275 CC2D2AQ9P2K1 1620 aa25.59■■□□□ 1.69
PNLDC1-201ENST00000275275 BAZ1BQ9UIG0 1483 aaKnown RBP25.52■■□□□ 1.68
PNLDC1-201ENST00000275275 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
PNLDC1-201ENST00000275275 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
PNLDC1-201ENST00000275275 CCDC88BA6NC98 1476 aa25.31■■□□□ 1.64
PNLDC1-201ENST00000275275 CHIC1Q5VXU3 224 aa25.25■■□□□ 1.63
PNLDC1-201ENST00000275275 DNAJC5BQ9UF47 199 aa25.14■■□□□ 1.61
PNLDC1-201ENST00000275275 CFTRP13569 1480 aa24.85■■□□□ 1.57
PNLDC1-201ENST00000275275 PRDM2Q13029 1718 aa24.83■■□□□ 1.57
PNLDC1-201ENST00000275275 CADPSQ9ULU8 1353 aa24.8■■□□□ 1.56
PNLDC1-201ENST00000275275 TRIM41Q8WV44 630 aa24.74■■□□□ 1.55
PNLDC1-201ENST00000275275 ABCC8Q09428 1581 aa24.73■■□□□ 1.55
PNLDC1-201ENST00000275275 NESP48681 1621 aa24.73■■□□□ 1.55
PNLDC1-201ENST00000275275 LAMC3Q9Y6N6 1575 aa24.7■■□□□ 1.54
PNLDC1-201ENST00000275275 WRNQ14191 1432 aaPredicted RBP eCLIP24.56■■□□□ 1.52
PNLDC1-201ENST00000275275 FANCD2Q9BXW9 1451 aa24.56■■□□□ 1.52
PNLDC1-201ENST00000275275 SYNJ1O43426 1573 aa24.52■■□□□ 1.52
PNLDC1-201ENST00000275275 KIF21AQ7Z4S6 1674 aa24.49■■□□□ 1.51
PNLDC1-201ENST00000275275 PDS5BQ9NTI5 1447 aa24.47■■□□□ 1.51
PNLDC1-201ENST00000275275 TOP2BQ02880 1626 aa24.44■■□□□ 1.5
PNLDC1-201ENST00000275275 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
PNLDC1-201ENST00000275275 BIVM-ERCC5R4GMW8 1640 aa24.44■■□□□ 1.5
PNLDC1-201ENST00000275275 CUX1P39880 1505 aa24.43■■□□□ 1.5
PNLDC1-201ENST00000275275 DNMBPQ6XZF7 1577 aa24.31■■□□□ 1.48
PNLDC1-201ENST00000275275 LOC105371045A0A1W2PR82 267 aa24.3■■□□□ 1.48
PNLDC1-201ENST00000275275 FAM9AQ8IZU1 332 aaPredicted RBP24.29■■□□□ 1.48
PNLDC1-201ENST00000275275 URB2Q14146 1524 aaKnown RBP24.28■■□□□ 1.48
PNLDC1-201ENST00000275275 TOPBP1Q92547 1522 aa24.27■■□□□ 1.48
PNLDC1-201ENST00000275275 ERCC6Q03468 1493 aa24.24■■□□□ 1.47
PNLDC1-201ENST00000275275 FGD5Q6ZNL6 1462 aa24.2■■□□□ 1.46
PNLDC1-201ENST00000275275 MRC2Q9UBG0 1479 aa24.2■■□□□ 1.46
PNLDC1-201ENST00000275275 SOGA1O94964 1423 aa24.17■■□□□ 1.46
PNLDC1-201ENST00000275275 THOC2Q8NI27 1593 aaKnown RBP24.13■■□□□ 1.45
PNLDC1-201ENST00000275275 POLA1P09884 1462 aaPredicted RBP24.13■■□□□ 1.45
PNLDC1-201ENST00000275275 WDR62O43379 1518 aa24.11■■□□□ 1.45
PNLDC1-201ENST00000275275 RUSC2Q8N2Y8 1516 aa24.11■■□□□ 1.45
PNLDC1-201ENST00000275275 EEA1Q15075 1411 aa24.08■■□□□ 1.45
PNLDC1-201ENST00000275275 RAD54L2Q9Y4B4 1467 aa24.03■■□□□ 1.44
PNLDC1-201ENST00000275275 WDR97A6NE52 1622 aa24■■□□□ 1.43
PNLDC1-201ENST00000275275 CSRNP3Q8WYN3 585 aa23.98■■□□□ 1.43
PNLDC1-201ENST00000275275 ABCA10Q8WWZ4 1543 aa23.97■■□□□ 1.43
PNLDC1-201ENST00000275275 CUX2O14529 1486 aa23.97■■□□□ 1.43
PNLDC1-201ENST00000275275 TARBP1Q13395 1621 aaKnown RBP23.96■■□□□ 1.43
PNLDC1-201ENST00000275275 KIF27Q86VH2 1401 aa23.95■■□□□ 1.43
PNLDC1-201ENST00000275275 EHMT2Q96KQ7 1210 aa23.94■■□□□ 1.42
PNLDC1-201ENST00000275275 ABCA5Q8WWZ7 1642 aa23.85■■□□□ 1.41
PNLDC1-201ENST00000275275 IFT140Q96RY7 1462 aa23.85■■□□□ 1.41
PNLDC1-201ENST00000275275 TDRD9Q8NDG6 1382 aaKnown RBP23.81■■□□□ 1.4
PNLDC1-201ENST00000275275 KIF21BO75037 1637 aa23.8■■□□□ 1.4
PNLDC1-201ENST00000275275 GAPVD1Q14C86 1478 aa23.77■■□□□ 1.4
PNLDC1-201ENST00000275275 GOLGA3Q08378 1498 aa23.76■■□□□ 1.39
PNLDC1-201ENST00000275275 ZNF608Q9ULD9 1512 aaPredicted RBP23.76■■□□□ 1.39
PNLDC1-201ENST00000275275 IGF1RP08069 1367 aa23.76■■□□□ 1.39
PNLDC1-201ENST00000275275 PBRM1Q86U86 1689 aa23.74■■□□□ 1.39
PNLDC1-201ENST00000275275 PRXQ9BXM0 1461 aa23.73■■□□□ 1.39
PNLDC1-201ENST00000275275 TNIKQ9UKE5 1360 aa23.73■■□□□ 1.39
PNLDC1-201ENST00000275275 AQRO60306 1485 aaKnown RBP eCLIP23.72■■□□□ 1.39
PNLDC1-201ENST00000275275 EIF4G3O43432 1585 aaKnown RBP23.71■■□□□ 1.39
PNLDC1-201ENST00000275275 RAPGEF2Q9Y4G8 1499 aa23.7■■□□□ 1.38
PNLDC1-201ENST00000275275 ERICH3Q5RHP9 1530 aa23.7■■□□□ 1.38
PNLDC1-201ENST00000275275 CUL7Q14999 1698 aa23.68■■□□□ 1.38
PNLDC1-201ENST00000275275 UBTFP17480 764 aaKnown RBP23.67■■□□□ 1.38
PNLDC1-201ENST00000275275 CARMIL1Q5VZK9 1371 aa23.64■■□□□ 1.37
PNLDC1-201ENST00000275275 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
PNLDC1-201ENST00000275275 CEP162Q5TB80 1403 aa23.58■■□□□ 1.37
PNLDC1-201ENST00000275275 ADAMTS12P58397 1594 aa23.55■■□□□ 1.36
PNLDC1-201ENST00000275275 SNAPC4Q5SXM2 1469 aa23.51■■□□□ 1.35
PNLDC1-201ENST00000275275 FHAD1B1AJZ9 1412 aa23.49■■□□□ 1.35
PNLDC1-201ENST00000275275 MAGI1Q96QZ7 1491 aaPredicted RBP23.46■■□□□ 1.35
PNLDC1-201ENST00000275275 CTTNBP2Q8WZ74 1663 aa23.42■■□□□ 1.34
PNLDC1-201ENST00000275275 CLIP1P30622 1438 aa23.38■■□□□ 1.33
PNLDC1-201ENST00000275275 SYNJ2O15056 1496 aa23.37■■□□□ 1.33
PNLDC1-201ENST00000275275 GRIN2AQ12879 1464 aa23.35■■□□□ 1.33
PNLDC1-201ENST00000275275 RANGAP1P46060 587 aaPredicted RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms