RNA–Protein interactions for RNA: ENST00000264389.6

COPS4-201, Transcript of COP9 signalosome subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS4, Length 1,744 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-201ENST00000264389 NISCHQ9Y2I1 1504 aa18.95■□□□□ 0.62
COPS4-201ENST00000264389 AEBP2Q6ZN18 517 aaPredicted RBP17.47■□□□□ 0.39
COPS4-201ENST00000264389 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
COPS4-201ENST00000264389 CCDC180Q9P1Z9 1646 aa16.67■□□□□ 0.26
COPS4-201ENST00000264389 ZCCHC6Q5VYS8 1495 aaKnown RBP15.94■□□□□ 0.14
COPS4-201ENST00000264389 DCAF1Q9Y4B6 1507 aa15.69■□□□□ 0.1
COPS4-201ENST00000264389 ABCC9O60706 1549 aa15.65■□□□□ 0.1
COPS4-201ENST00000264389 DCAF8L2P0C7V8 631 aa15.55■□□□□ 0.08
COPS4-201ENST00000264389 MYO15BQ96JP2 1530 aa15.5■□□□□ 0.07
COPS4-201ENST00000264389 NACADO15069 1562 aa15.44■□□□□ 0.06
COPS4-201ENST00000264389 SHROOM4Q9ULL8 1493 aa15.4■□□□□ 0.06
COPS4-201ENST00000264389 RB1CC1Q8TDY2 1594 aa15.34■□□□□ 0.05
COPS4-201ENST00000264389 SCRIBQ14160 1630 aa15.27■□□□□ 0.03
COPS4-201ENST00000264389 PHF23Q9BUL5 403 aaPredicted RBP15.21■□□□□ 0.03
COPS4-201ENST00000264389 UNC13AQ9UPW8 1703 aa15.13■□□□□ 0.01
COPS4-201ENST00000264389 BICRAQ9NZM4 1560 aa14.84□□□□□ -0.03
COPS4-201ENST00000264389 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
COPS4-201ENST00000264389 SENP3Q9H4L4 574 aaPredicted RBP14.72□□□□□ -0.05
COPS4-201ENST00000264389 CECR2Q9BXF3 1484 aa14.69□□□□□ -0.06
COPS4-201ENST00000264389 BAZ1AQ9NRL2 1556 aaPredicted RBP14.68□□□□□ -0.06
COPS4-201ENST00000264389 PABPN1Q86U42 306 aaKnown RBP eCLIP14.66□□□□□ -0.06
COPS4-201ENST00000264389 RSF1Q96T23 1441 aaPredicted RBP14.64□□□□□ -0.07
COPS4-201ENST00000264389 SMARCA4P51532 1647 aa14.63□□□□□ -0.07
COPS4-201ENST00000264389 MROH2BQ7Z745 1585 aa14.63□□□□□ -0.07
COPS4-201ENST00000264389 WIZO95785 1651 aa14.58□□□□□ -0.08
COPS4-201ENST00000264389 PEG3Q9GZU2 1588 aa14.44□□□□□ -0.1
COPS4-201ENST00000264389 EIF4G1Q04637 1599 aaKnown RBP14.41□□□□□ -0.1
COPS4-201ENST00000264389 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
COPS4-201ENST00000264389 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
COPS4-201ENST00000264389 ATAD2BQ9ULI0 1458 aa14.32□□□□□ -0.12
COPS4-201ENST00000264389 BAZ1BQ9UIG0 1483 aaKnown RBP14.28□□□□□ -0.12
COPS4-201ENST00000264389 HMGXB3Q12766 1538 aa14.25□□□□□ -0.13
COPS4-201ENST00000264389 CC2D2AQ9P2K1 1620 aa14.22□□□□□ -0.13
COPS4-201ENST00000264389 CCDC88BA6NC98 1476 aa14.19□□□□□ -0.14
COPS4-201ENST00000264389 NCAPD3P42695 1498 aa14.18□□□□□ -0.14
COPS4-201ENST00000264389 PLPPR3Q6T4P5 718 aa14.07□□□□□ -0.16
COPS4-201ENST00000264389 PRDM2Q13029 1718 aa14.03□□□□□ -0.16
COPS4-201ENST00000264389 ABCC8Q09428 1581 aa13.95□□□□□ -0.18
COPS4-201ENST00000264389 TRIM41Q8WV44 630 aa13.88□□□□□ -0.19
COPS4-201ENST00000264389 CFTRP13569 1480 aa13.88□□□□□ -0.19
COPS4-201ENST00000264389 SYNJ1O43426 1573 aa13.82□□□□□ -0.2
COPS4-201ENST00000264389 WRNQ14191 1432 aaPredicted RBP eCLIP13.82□□□□□ -0.2
COPS4-201ENST00000264389 CADPSQ9ULU8 1353 aa13.8□□□□□ -0.2
COPS4-201ENST00000264389 BIVM-ERCC5R4GMW8 1640 aa13.8□□□□□ -0.2
COPS4-201ENST00000264389 LAMC3Q9Y6N6 1575 aa13.79□□□□□ -0.2
COPS4-201ENST00000264389 TOP2BQ02880 1626 aa13.77□□□□□ -0.21
COPS4-201ENST00000264389 NESP48681 1621 aa13.73□□□□□ -0.21
COPS4-201ENST00000264389 FANCD2Q9BXW9 1451 aa13.7□□□□□ -0.22
COPS4-201ENST00000264389 CUX1P39880 1505 aa13.7□□□□□ -0.22
COPS4-201ENST00000264389 KIF21AQ7Z4S6 1674 aa13.69□□□□□ -0.22
COPS4-201ENST00000264389 FOXD1Q16676 465 aa13.68□□□□□ -0.22
COPS4-201ENST00000264389 DNAJC5BQ9UF47 199 aa13.68□□□□□ -0.22
COPS4-201ENST00000264389 CEP164Q9UPV0 1460 aa13.65□□□□□ -0.22
COPS4-201ENST00000264389 DNMBPQ6XZF7 1577 aa13.63□□□□□ -0.23
COPS4-201ENST00000264389 FAM9AQ8IZU1 332 aaPredicted RBP13.62□□□□□ -0.23
COPS4-201ENST00000264389 EEA1Q15075 1411 aa13.62□□□□□ -0.23
COPS4-201ENST00000264389 PDS5BQ9NTI5 1447 aa13.62□□□□□ -0.23
COPS4-201ENST00000264389 SOGA1O94964 1423 aa13.6□□□□□ -0.23
COPS4-201ENST00000264389 TOPBP1Q92547 1522 aa13.56□□□□□ -0.24
COPS4-201ENST00000264389 RUSC2Q8N2Y8 1516 aa13.56□□□□□ -0.24
COPS4-201ENST00000264389 FGD5Q6ZNL6 1462 aa13.56□□□□□ -0.24
COPS4-201ENST00000264389 URB2Q14146 1524 aaKnown RBP13.53□□□□□ -0.24
COPS4-201ENST00000264389 LOC105371045A0A1W2PR82 267 aa13.53□□□□□ -0.24
COPS4-201ENST00000264389 WDR97A6NE52 1622 aa13.51□□□□□ -0.25
COPS4-201ENST00000264389 KIF21BO75037 1637 aa13.51□□□□□ -0.25
COPS4-201ENST00000264389 POLA1P09884 1462 aaPredicted RBP13.49□□□□□ -0.25
COPS4-201ENST00000264389 MRC2Q9UBG0 1479 aa13.48□□□□□ -0.25
COPS4-201ENST00000264389 KIF27Q86VH2 1401 aa13.46□□□□□ -0.25
COPS4-201ENST00000264389 CSRNP3Q8WYN3 585 aa13.46□□□□□ -0.25
COPS4-201ENST00000264389 CUX2O14529 1486 aa13.45□□□□□ -0.26
COPS4-201ENST00000264389 ERCC6Q03468 1493 aa13.45□□□□□ -0.26
COPS4-201ENST00000264389 GOLGA3Q08378 1498 aa13.45□□□□□ -0.26
COPS4-201ENST00000264389 THOC2Q8NI27 1593 aaKnown RBP13.44□□□□□ -0.26
COPS4-201ENST00000264389 EHMT2Q96KQ7 1210 aa13.44□□□□□ -0.26
COPS4-201ENST00000264389 WDR62O43379 1518 aa13.43□□□□□ -0.26
COPS4-201ENST00000264389 ABCA10Q8WWZ4 1543 aa13.43□□□□□ -0.26
COPS4-201ENST00000264389 RAD54L2Q9Y4B4 1467 aa13.42□□□□□ -0.26
COPS4-201ENST00000264389 ERICH3Q5RHP9 1530 aa13.4□□□□□ -0.26
COPS4-201ENST00000264389 TARBP1Q13395 1621 aaKnown RBP13.39□□□□□ -0.27
COPS4-201ENST00000264389 ABCA5Q8WWZ7 1642 aa13.39□□□□□ -0.27
COPS4-201ENST00000264389 ADRA2BP18089 450 aa13.37□□□□□ -0.27
COPS4-201ENST00000264389 PPP6R1Q9UPN7 881 aa13.37□□□□□ -0.27
COPS4-201ENST00000264389 CUL7Q14999 1698 aa13.36□□□□□ -0.27
COPS4-201ENST00000264389 PBRM1Q86U86 1689 aa13.36□□□□□ -0.27
COPS4-201ENST00000264389 PRXQ9BXM0 1461 aa13.36□□□□□ -0.27
COPS4-201ENST00000264389 RAPGEF2Q9Y4G8 1499 aa13.35□□□□□ -0.27
COPS4-201ENST00000264389 TNIKQ9UKE5 1360 aa13.34□□□□□ -0.27
COPS4-201ENST00000264389 CEP162Q5TB80 1403 aa13.31□□□□□ -0.28
COPS4-201ENST00000264389 UBTFP17480 764 aaKnown RBP13.3□□□□□ -0.28
COPS4-201ENST00000264389 IFT140Q96RY7 1462 aa13.3□□□□□ -0.28
COPS4-201ENST00000264389 GAPVD1Q14C86 1478 aa13.29□□□□□ -0.28
COPS4-201ENST00000264389 IGF1RP08069 1367 aa13.28□□□□□ -0.28
COPS4-201ENST00000264389 CTTNBP2Q8WZ74 1663 aa13.27□□□□□ -0.29
COPS4-201ENST00000264389 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
COPS4-201ENST00000264389 TDRD9Q8NDG6 1382 aaKnown RBP13.26□□□□□ -0.29
COPS4-201ENST00000264389 CARMIL1Q5VZK9 1371 aa13.25□□□□□ -0.29
COPS4-201ENST00000264389 ADAMTS12P58397 1594 aa13.22□□□□□ -0.29
COPS4-201ENST00000264389 ZNF608Q9ULD9 1512 aaPredicted RBP13.21□□□□□ -0.3
COPS4-201ENST00000264389 CLIP1P30622 1438 aa13.2□□□□□ -0.3
COPS4-201ENST00000264389 GRIN2BQ13224 1484 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms