RNA–Protein interactions for RNA: ENST00000255465.6

CCNA1-201, Transcript of cyclin A1, humanhuman

TSL 1 (best) BASIC

Gene CCNA1, Length 1,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1-201ENST00000255465 NISCHQ9Y2I1 1504 aa25.58■■□□□ 1.69
CCNA1-201ENST00000255465 CCDC180Q9P1Z9 1646 aa22.72■■□□□ 1.23
CCNA1-201ENST00000255465 ABCC9O60706 1549 aa22.11■■□□□ 1.13
CCNA1-201ENST00000255465 DCAF8L2P0C7V8 631 aa21.32■■□□□ 1
CCNA1-201ENST00000255465 ZCCHC6Q5VYS8 1495 aaKnown RBP21.32■■□□□ 1
CCNA1-201ENST00000255465 NACADO15069 1562 aa21.31■■□□□ 1
CCNA1-201ENST00000255465 RB1CC1Q8TDY2 1594 aa21.31■■□□□ 1
CCNA1-201ENST00000255465 MYO15BQ96JP2 1530 aa21.21■□□□□ 0.99
CCNA1-201ENST00000255465 DCAF1Q9Y4B6 1507 aa21.16■□□□□ 0.98
CCNA1-201ENST00000255465 PELP1Q8IZL8 1130 aaKnown RBP21.04■□□□□ 0.96
CCNA1-201ENST00000255465 UNC13AQ9UPW8 1703 aa20.93■□□□□ 0.94
CCNA1-201ENST00000255465 MYT1Q01538 1121 aa20.75■□□□□ 0.91
CCNA1-201ENST00000255465 SCRIBQ14160 1630 aa20.73■□□□□ 0.91
CCNA1-201ENST00000255465 BICRAQ9NZM4 1560 aa20.69■□□□□ 0.9
CCNA1-201ENST00000255465 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.9
CCNA1-201ENST00000255465 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
CCNA1-201ENST00000255465 DNAJC5BQ9UF47 199 aa20.2■□□□□ 0.82
CCNA1-201ENST00000255465 EIF4G1Q04637 1599 aaKnown RBP20.12■□□□□ 0.81
CCNA1-201ENST00000255465 CC2D2AQ9P2K1 1620 aa20.02■□□□□ 0.8
CCNA1-201ENST00000255465 CECR2Q9BXF3 1484 aa19.92■□□□□ 0.78
CCNA1-201ENST00000255465 TTBK1Q5TCY1 1321 aaPredicted RBP19.91■□□□□ 0.78
CCNA1-201ENST00000255465 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
CCNA1-201ENST00000255465 BAZ1AQ9NRL2 1556 aaPredicted RBP19.81■□□□□ 0.76
CCNA1-201ENST00000255465 HRCP23327 699 aa19.77■□□□□ 0.76
CCNA1-201ENST00000255465 MROH2BQ7Z745 1585 aa19.72■□□□□ 0.75
CCNA1-201ENST00000255465 ATAD2BQ9ULI0 1458 aa19.68■□□□□ 0.74
CCNA1-201ENST00000255465 SMARCA2P51531 1590 aa19.67■□□□□ 0.74
CCNA1-201ENST00000255465 NCAPD3P42695 1498 aa19.66■□□□□ 0.74
CCNA1-201ENST00000255465 PEG3Q9GZU2 1588 aa19.64■□□□□ 0.73
CCNA1-201ENST00000255465 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
CCNA1-201ENST00000255465 WIZO95785 1651 aa19.55■□□□□ 0.72
CCNA1-201ENST00000255465 BAZ1BQ9UIG0 1483 aaKnown RBP19.53■□□□□ 0.72
CCNA1-201ENST00000255465 RSF1Q96T23 1441 aaPredicted RBP19.52■□□□□ 0.72
CCNA1-201ENST00000255465 TOP2AP11388 1531 aaKnown RBP19.3■□□□□ 0.68
CCNA1-201ENST00000255465 NESP48681 1621 aa19.17■□□□□ 0.66
CCNA1-201ENST00000255465 LAMC3Q9Y6N6 1575 aa19.14■□□□□ 0.65
CCNA1-201ENST00000255465 SUPT5HO00267 1087 aaKnown RBP19.1■□□□□ 0.65
CCNA1-201ENST00000255465 CADPSQ9ULU8 1353 aa19.08■□□□□ 0.64
CCNA1-201ENST00000255465 CCDC88BA6NC98 1476 aa19.08■□□□□ 0.64
CCNA1-201ENST00000255465 ERCC6Q03468 1493 aa19.03■□□□□ 0.64
CCNA1-201ENST00000255465 CFTRP13569 1480 aa19■□□□□ 0.63
CCNA1-201ENST00000255465 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
CCNA1-201ENST00000255465 KIF21AQ7Z4S6 1674 aa18.99■□□□□ 0.63
CCNA1-201ENST00000255465 PDS5BQ9NTI5 1447 aa18.98■□□□□ 0.63
CCNA1-201ENST00000255465 PRDM2Q13029 1718 aa18.95■□□□□ 0.62
CCNA1-201ENST00000255465 DNAJC5Q9H3Z4 198 aa18.9■□□□□ 0.62
CCNA1-201ENST00000255465 FANCD2Q9BXW9 1451 aa18.87■□□□□ 0.61
CCNA1-201ENST00000255465 THOC2Q8NI27 1593 aaKnown RBP18.86■□□□□ 0.61
CCNA1-201ENST00000255465 CEP164Q9UPV0 1460 aa18.84■□□□□ 0.61
CCNA1-201ENST00000255465 CUX2O14529 1486 aa18.79■□□□□ 0.6
CCNA1-201ENST00000255465 MRC2Q9UBG0 1479 aa18.79■□□□□ 0.6
CCNA1-201ENST00000255465 WDR62O43379 1518 aa18.73■□□□□ 0.59
CCNA1-201ENST00000255465 PPARGC1BQ86YN6 1023 aaKnown RBP18.72■□□□□ 0.59
CCNA1-201ENST00000255465 URB2Q14146 1524 aaKnown RBP18.69■□□□□ 0.58
CCNA1-201ENST00000255465 ERICH6Q7L0X2 663 aa18.67■□□□□ 0.58
CCNA1-201ENST00000255465 TOPBP1Q92547 1522 aa18.59■□□□□ 0.57
CCNA1-201ENST00000255465 ABCC8Q09428 1581 aa18.58■□□□□ 0.57
CCNA1-201ENST00000255465 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
CCNA1-201ENST00000255465 ZEB1P37275 1124 aaPredicted RBP18.56■□□□□ 0.56
CCNA1-201ENST00000255465 PRKCSHP14314 528 aaPredicted RBP18.54■□□□□ 0.56
CCNA1-201ENST00000255465 BCL11AQ9H165 835 aa18.5■□□□□ 0.55
CCNA1-201ENST00000255465 CUX1P39880 1505 aa18.49■□□□□ 0.55
CCNA1-201ENST00000255465 PCGF6Q9BYE7 350 aa18.49■□□□□ 0.55
CCNA1-201ENST00000255465 CENPBP07199 599 aaPredicted RBP18.48■□□□□ 0.55
CCNA1-201ENST00000255465 ACIN1Q9UKV3 1341 aaKnown RBP18.45■□□□□ 0.54
CCNA1-201ENST00000255465 POLA1P09884 1462 aaPredicted RBP18.43■□□□□ 0.54
CCNA1-201ENST00000255465 IFT140Q96RY7 1462 aa18.43■□□□□ 0.54
CCNA1-201ENST00000255465 APLP2Q06481 763 aa18.41■□□□□ 0.54
CCNA1-201ENST00000255465 FGD5Q6ZNL6 1462 aa18.41■□□□□ 0.54
CCNA1-201ENST00000255465 TARBP1Q13395 1621 aaKnown RBP18.4■□□□□ 0.54
CCNA1-201ENST00000255465 WRNQ14191 1432 aaPredicted RBP eCLIP18.39■□□□□ 0.53
CCNA1-201ENST00000255465 BIVM-ERCC5R4GMW8 1640 aa18.38■□□□□ 0.53
CCNA1-201ENST00000255465 TOP2BQ02880 1626 aa18.37■□□□□ 0.53
CCNA1-201ENST00000255465 SYNJ1O43426 1573 aa18.37■□□□□ 0.53
CCNA1-201ENST00000255465 ZNF608Q9ULD9 1512 aaPredicted RBP18.36■□□□□ 0.53
CCNA1-201ENST00000255465 RAD54L2Q9Y4B4 1467 aa18.36■□□□□ 0.53
CCNA1-201ENST00000255465 SOGA1O94964 1423 aa18.36■□□□□ 0.53
CCNA1-201ENST00000255465 EIF4G3O43432 1585 aaKnown RBP18.3■□□□□ 0.52
CCNA1-201ENST00000255465 WDR97A6NE52 1622 aa18.29■□□□□ 0.52
CCNA1-201ENST00000255465 AQRO60306 1485 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCNA1-201ENST00000255465 TDRD9Q8NDG6 1382 aaKnown RBP18.24■□□□□ 0.51
CCNA1-201ENST00000255465 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
CCNA1-201ENST00000255465 FAM9AQ8IZU1 332 aaPredicted RBP18.2■□□□□ 0.5
CCNA1-201ENST00000255465 ABCA5Q8WWZ7 1642 aa18.17■□□□□ 0.5
CCNA1-201ENST00000255465 PBRM1Q86U86 1689 aa18.16■□□□□ 0.5
CCNA1-201ENST00000255465 GAPVD1Q14C86 1478 aa18.15■□□□□ 0.5
CCNA1-201ENST00000255465 GTF3C3Q9Y5Q9 886 aa18.14■□□□□ 0.49
CCNA1-201ENST00000255465 GRIN2BQ13224 1484 aa18.13■□□□□ 0.49
CCNA1-201ENST00000255465 NEUROD1Q13562 356 aa18.11■□□□□ 0.49
CCNA1-201ENST00000255465 CHD1O14646 1710 aa18.09■□□□□ 0.49
CCNA1-201ENST00000255465 SNAPC4Q5SXM2 1469 aa18.09■□□□□ 0.49
CCNA1-201ENST00000255465 TRIM26Q12899 539 aaPredicted RBP18.07■□□□□ 0.48
CCNA1-201ENST00000255465 MAGI1Q96QZ7 1491 aaPredicted RBP18.07■□□□□ 0.48
CCNA1-201ENST00000255465 OSCARQ8IYS5 282 aa18.04■□□□□ 0.48
CCNA1-201ENST00000255465 TRIM41Q8WV44 630 aa18.03■□□□□ 0.48
CCNA1-201ENST00000255465 FBLN2P98095 1184 aa18.02■□□□□ 0.48
CCNA1-201ENST00000255465 ANP32EQ9BTT0 268 aa18.02■□□□□ 0.48
CCNA1-201ENST00000255465 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.47
CCNA1-201ENST00000255465 SYNJ2O15056 1496 aa18■□□□□ 0.47
CCNA1-201ENST00000255465 KIF27Q86VH2 1401 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms