RNA–Protein interactions for RNA: ENST00000009180.8

CD9-201, Transcript of CD9 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD9, Length 1,169 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-201ENST00000009180 NISCHQ9Y2I1 1504 aa24.07■■□□□ 1.44
CD9-201ENST00000009180 CCDC180Q9P1Z9 1646 aa21.26■□□□□ 0.99
CD9-201ENST00000009180 ABCC9O60706 1549 aa20.64■□□□□ 0.9
CD9-201ENST00000009180 AEBP2Q6ZN18 517 aaPredicted RBP20.44■□□□□ 0.86
CD9-201ENST00000009180 ZCCHC6Q5VYS8 1495 aaKnown RBP20.12■□□□□ 0.81
CD9-201ENST00000009180 DCAF8L2P0C7V8 631 aa20.03■□□□□ 0.8
CD9-201ENST00000009180 CHIC1Q5VXU3 224 aa20.01■□□□□ 0.79
CD9-201ENST00000009180 NACADO15069 1562 aa19.91■□□□□ 0.78
CD9-201ENST00000009180 RB1CC1Q8TDY2 1594 aa19.89■□□□□ 0.77
CD9-201ENST00000009180 DCAF1Q9Y4B6 1507 aa19.87■□□□□ 0.77
CD9-201ENST00000009180 MYO15BQ96JP2 1530 aa19.84■□□□□ 0.77
CD9-201ENST00000009180 SCRIBQ14160 1630 aa19.51■□□□□ 0.71
CD9-201ENST00000009180 UNC13AQ9UPW8 1703 aa19.48■□□□□ 0.71
CD9-201ENST00000009180 BICRAQ9NZM4 1560 aa19.33■□□□□ 0.69
CD9-201ENST00000009180 PABPN1Q86U42 306 aaKnown RBP eCLIP19.33■□□□□ 0.68
CD9-201ENST00000009180 SHROOM4Q9ULL8 1493 aa19.27■□□□□ 0.67
CD9-201ENST00000009180 EIF4G1Q04637 1599 aaKnown RBP18.79■□□□□ 0.6
CD9-201ENST00000009180 CECR2Q9BXF3 1484 aa18.77■□□□□ 0.59
CD9-201ENST00000009180 DNAJC5BQ9UF47 199 aa18.71■□□□□ 0.59
CD9-201ENST00000009180 CC2D2AQ9P2K1 1620 aa18.65■□□□□ 0.58
CD9-201ENST00000009180 SMARCA4P51532 1647 aa18.63■□□□□ 0.57
CD9-201ENST00000009180 BAZ1AQ9NRL2 1556 aaPredicted RBP18.62■□□□□ 0.57
CD9-201ENST00000009180 MROH2BQ7Z745 1585 aa18.59■□□□□ 0.57
CD9-201ENST00000009180 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
CD9-201ENST00000009180 RSF1Q96T23 1441 aaPredicted RBP18.45■□□□□ 0.54
CD9-201ENST00000009180 SMARCA2P51531 1590 aa18.42■□□□□ 0.54
CD9-201ENST00000009180 PEG3Q9GZU2 1588 aa18.41■□□□□ 0.54
CD9-201ENST00000009180 WIZO95785 1651 aa18.41■□□□□ 0.54
CD9-201ENST00000009180 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
CD9-201ENST00000009180 BAZ1BQ9UIG0 1483 aaKnown RBP18.33■□□□□ 0.53
CD9-201ENST00000009180 HMGXB3Q12766 1538 aa18.33■□□□□ 0.52
CD9-201ENST00000009180 TOP2AP11388 1531 aaKnown RBP18.2■□□□□ 0.5
CD9-201ENST00000009180 SUPT5HO00267 1087 aaKnown RBP18.2■□□□□ 0.5
CD9-201ENST00000009180 CCDC88BA6NC98 1476 aa17.99■□□□□ 0.47
CD9-201ENST00000009180 NESP48681 1621 aa17.94■□□□□ 0.46
CD9-201ENST00000009180 CADPSQ9ULU8 1353 aa17.87■□□□□ 0.45
CD9-201ENST00000009180 LAMC3Q9Y6N6 1575 aa17.86■□□□□ 0.45
CD9-201ENST00000009180 CFTRP13569 1480 aa17.82■□□□□ 0.44
CD9-201ENST00000009180 ERCC6Q03468 1493 aa17.74■□□□□ 0.43
CD9-201ENST00000009180 KIF21AQ7Z4S6 1674 aa17.72■□□□□ 0.43
CD9-201ENST00000009180 PDS5BQ9NTI5 1447 aa17.72■□□□□ 0.43
CD9-201ENST00000009180 PRDM2Q13029 1718 aa17.69■□□□□ 0.42
CD9-201ENST00000009180 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
CD9-201ENST00000009180 CEP164Q9UPV0 1460 aa17.64■□□□□ 0.41
CD9-201ENST00000009180 THOC2Q8NI27 1593 aaKnown RBP17.6■□□□□ 0.41
CD9-201ENST00000009180 PHF23Q9BUL5 403 aaPredicted RBP17.57■□□□□ 0.4
CD9-201ENST00000009180 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
CD9-201ENST00000009180 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.4
CD9-201ENST00000009180 WDR62O43379 1518 aa17.5■□□□□ 0.39
CD9-201ENST00000009180 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
CD9-201ENST00000009180 TOPBP1Q92547 1522 aa17.44■□□□□ 0.38
CD9-201ENST00000009180 DNMBPQ6XZF7 1577 aa17.44■□□□□ 0.38
CD9-201ENST00000009180 CUX1P39880 1505 aa17.43■□□□□ 0.38
CD9-201ENST00000009180 CUX2O14529 1486 aa17.42■□□□□ 0.38
CD9-201ENST00000009180 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
CD9-201ENST00000009180 WRNQ14191 1432 aaPredicted RBP eCLIP17.38■□□□□ 0.37
CD9-201ENST00000009180 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
CD9-201ENST00000009180 POLA1P09884 1462 aaPredicted RBP17.32■□□□□ 0.36
CD9-201ENST00000009180 FGD5Q6ZNL6 1462 aa17.32■□□□□ 0.36
CD9-201ENST00000009180 BIVM-ERCC5R4GMW8 1640 aa17.32■□□□□ 0.36
CD9-201ENST00000009180 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
CD9-201ENST00000009180 RAD54L2Q9Y4B4 1467 aa17.26■□□□□ 0.35
CD9-201ENST00000009180 DNAJC5Q9H3Z4 198 aa17.26■□□□□ 0.35
CD9-201ENST00000009180 IFT140Q96RY7 1462 aa17.24■□□□□ 0.35
CD9-201ENST00000009180 TARBP1Q13395 1621 aaKnown RBP17.24■□□□□ 0.35
CD9-201ENST00000009180 SOGA1O94964 1423 aa17.22■□□□□ 0.35
CD9-201ENST00000009180 ZNF608Q9ULD9 1512 aaPredicted RBP17.21■□□□□ 0.34
CD9-201ENST00000009180 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
CD9-201ENST00000009180 EIF4G3O43432 1585 aaKnown RBP17.14■□□□□ 0.33
CD9-201ENST00000009180 TDRD9Q8NDG6 1382 aaKnown RBP17.14■□□□□ 0.33
CD9-201ENST00000009180 ABCA10Q8WWZ4 1543 aa17.13■□□□□ 0.33
CD9-201ENST00000009180 TRIM41Q8WV44 630 aa17.13■□□□□ 0.33
CD9-201ENST00000009180 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.33
CD9-201ENST00000009180 ABCA5Q8WWZ7 1642 aa17.07■□□□□ 0.32
CD9-201ENST00000009180 GAPVD1Q14C86 1478 aa17.04■□□□□ 0.32
CD9-201ENST00000009180 PBRM1Q86U86 1689 aa17.01■□□□□ 0.31
CD9-201ENST00000009180 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
CD9-201ENST00000009180 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
CD9-201ENST00000009180 RUSC2Q8N2Y8 1516 aa16.98■□□□□ 0.31
CD9-201ENST00000009180 KIF27Q86VH2 1401 aa16.97■□□□□ 0.31
CD9-201ENST00000009180 ERICH3Q5RHP9 1530 aa16.91■□□□□ 0.3
CD9-201ENST00000009180 MAGI1Q96QZ7 1491 aaPredicted RBP16.91■□□□□ 0.3
CD9-201ENST00000009180 ADAMTS12P58397 1594 aa16.89■□□□□ 0.3
CD9-201ENST00000009180 IGF1RP08069 1367 aa16.89■□□□□ 0.29
CD9-201ENST00000009180 FBLN2P98095 1184 aa16.86■□□□□ 0.29
CD9-201ENST00000009180 CHD1O14646 1710 aa16.86■□□□□ 0.29
CD9-201ENST00000009180 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
CD9-201ENST00000009180 FAM9AQ8IZU1 332 aaPredicted RBP16.84■□□□□ 0.29
CD9-201ENST00000009180 FHAD1B1AJZ9 1412 aa16.84■□□□□ 0.29
CD9-201ENST00000009180 CUL7Q14999 1698 aa16.81■□□□□ 0.28
CD9-201ENST00000009180 CHMP7Q8WUX9 453 aaPredicted RBP16.81■□□□□ 0.28
CD9-201ENST00000009180 GRIN2AQ12879 1464 aa16.79■□□□□ 0.28
CD9-201ENST00000009180 EEA1Q15075 1411 aa16.79■□□□□ 0.28
CD9-201ENST00000009180 CARMIL1Q5VZK9 1371 aa16.78■□□□□ 0.28
CD9-201ENST00000009180 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
CD9-201ENST00000009180 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
CD9-201ENST00000009180 CEP170Q5SW79 1584 aa16.72■□□□□ 0.27
CD9-201ENST00000009180 OSCARQ8IYS5 282 aa16.72■□□□□ 0.27
CD9-201ENST00000009180 RAPGEF2Q9Y4G8 1499 aa16.72■□□□□ 0.27
CD9-201ENST00000009180 NUP160Q12769 1436 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms