RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 SIP5P40210 489 aaKnown RBP-0.03□□□□□ -2.41
snR40snR40 ENP2P48234 707 aaKnown RBP-0.03□□□□□ -2.41
snR40snR40 TPP1Q03796 238 aa-0.03□□□□□ -2.41
snR40snR40 EMG1Q06287 252 aaKnown RBP-0.03□□□□□ -2.41
snR40snR40 NDD1Q08887 554 aa-0.03□□□□□ -2.41
snR40snR40 GLO4Q12320 285 aa-0.03□□□□□ -2.41
snR40snR40 SRO9P25567 434 aaKnown RBP-0.04□□□□□ -2.42
snR40snR40 ADY2P25613 283 aa-0.04□□□□□ -2.42
snR40snR40 DYS1P38791 387 aa-0.04□□□□□ -2.42
snR40snR40 SEG1Q04279 960 aa-0.04□□□□□ -2.42
snR40snR40 ALG6Q12001 544 aaKnown RBP-0.04□□□□□ -2.42
snR40snR40 GAL10P04397 699 aa-0.05□□□□□ -2.42
snR40snR40 PLB1P39105 664 aa-0.05□□□□□ -2.42
snR40snR40 FAA2P39518 744 aa-0.05□□□□□ -2.42
snR40snR40 LTP1P40347 161 aa-0.05□□□□□ -2.42
snR40snR40 EXG2P52911 562 aa-0.05□□□□□ -2.42
snR40snR40 PBP1P53297 722 aaKnown RBP-0.05□□□□□ -2.42
snR40snR40 NOP12Q08208 459 aaKnown RBP-0.05□□□□□ -2.42
snR40snR40 YIG1Q08956 461 aa-0.05□□□□□ -2.42
snR40snR40 HMI1Q12039 706 aa-0.05□□□□□ -2.42
snR40snR40 HCA4P20448 770 aaKnown RBP-0.06□□□□□ -2.42
snR40snR40 SRM1P21827 482 aa-0.06□□□□□ -2.42
snR40snR40 EMC1P25574 760 aa-0.06□□□□□ -2.42
snR40snR40 ELA1P53861 379 aaPredicted RBP-0.06□□□□□ -2.42
snR40snR40 UBP3Q01477 912 aaKnown RBP RIP-Chip data-0.06□□□□□ -2.42not detected
snR40snR40 MEC3Q02574 474 aa-0.06□□□□□ -2.42
snR40snR40 RSC58Q07979 502 aa-0.06□□□□□ -2.42
snR40snR40 SEC23P15303 768 aaKnown RBP-0.07□□□□□ -2.42
snR40snR40 VMA3P25515 160 aa-0.07□□□□□ -2.42
snR40snR40 BUL1P48524 976 aa-0.07□□□□□ -2.42
snR40snR40 VPS73P53142 486 aaKnown RBP-0.07□□□□□ -2.42
snR40snR40 YGR045CP53229 120 aa-0.07□□□□□ -2.42
snR40snR40 ATF2P53296 535 aa-0.07□□□□□ -2.42
snR40snR40 HBT1Q07653 1046 aaKnown RBP-0.07□□□□□ -2.42
snR40snR40 YLR149CQ99296 730 aa-0.07□□□□□ -2.42
snR40snR40 UBP1P25037 809 aa-0.08□□□□□ -2.42
snR40snR40 REI1P38344 393 aaPredicted RBP-0.08□□□□□ -2.42
snR40snR40 YIL169CP40442 995 aa-0.08□□□□□ -2.42
snR40snR40 YIL166CP40445 542 aa-0.08□□□□□ -2.42
snR40snR40 IRC8P47046 822 aa-0.08□□□□□ -2.42
snR40snR40 CSN12P47130 423 aa-0.08□□□□□ -2.42
snR40snR40 YOR111WQ99210 232 aa-0.08□□□□□ -2.42
snR40snR40 MET6P05694 767 aaKnown RBP-0.09□□□□□ -2.42
snR40snR40 SPT5P27692 1063 aaKnown RBP-0.09□□□□□ -2.42
snR40snR40 MCM5P29496 775 aaKnown RBP-0.09□□□□□ -2.42
snR40snR40 KTR4P38131 464 aa-0.09□□□□□ -2.42
snR40snR40 SEC26P41810 973 aaKnown RBP-0.09□□□□□ -2.42
snR40snR40 YTH1Q06102 208 aaPredicted RBP-0.1□□□□□ -2.43
snR40snR40 NBA1Q08229 501 aaKnown RBP-0.1□□□□□ -2.43
snR40snR40 LAS17Q12446 633 aa-0.1□□□□□ -2.43
snR40snR40 TSC13Q99190 310 aa-0.1□□□□□ -2.43
snR40snR40 CMP2P14747 604 aa-0.11□□□□□ -2.43
snR40snR40 MSN1P22148 382 aa-0.11□□□□□ -2.43
snR40snR40 GCS1P35197 352 aa-0.11□□□□□ -2.43
snR40snR40 AIM46P38885 310 aa-0.11□□□□□ -2.43
snR40snR40 HRB1P38922 454 aaKnown RBP RIP-Chip data-0.11□□□□□ -2.43not detected
snR40snR40 HOM2P13663 365 aaKnown RBP-0.12□□□□□ -2.43
snR40snR40 MRPL33P20084 86 aa-0.12□□□□□ -2.43
snR40snR40 RRN6P32786 894 aa-0.12□□□□□ -2.43
snR40snR40 NMD3P38861 518 aaKnown RBP-0.12□□□□□ -2.43
snR40snR40 YPP1P46951 817 aa-0.12□□□□□ -2.43
snR40snR40 GCV2P49095 1034 aa-0.12□□□□□ -2.43
snR40snR40 GTF1P53260 183 aaPredicted RBP-0.12□□□□□ -2.43
snR40snR40 SMA2Q04658 369 aa-0.12□□□□□ -2.43
snR40snR40 HTS1P07263 546 aaKnown RBP-0.13□□□□□ -2.43
snR40snR40 PPR1P07272 904 aaPredicted RBP-0.13□□□□□ -2.43
snR40snR40 ERG4P25340 473 aa-0.13□□□□□ -2.43
snR40snR40 CSE4P36012 229 aa-0.13□□□□□ -2.43
snR40snR40 XBP1P40489 647 aa-0.13□□□□□ -2.43
snR40snR40 AVO1Q08236 1176 aa-0.13□□□□□ -2.43
snR40snR40 ENB1Q08299 606 aa-0.13□□□□□ -2.43
snR40snR40 PEX6P33760 1030 aa-0.14□□□□□ -2.43
snR40snR40 YBR139WP38109 508 aa-0.14□□□□□ -2.43
snR40snR40 EXO84P38261 753 aa-0.14□□□□□ -2.43
snR40snR40 YBR287WP38355 427 aa-0.14□□□□□ -2.43
snR40snR40 DUN1P39009 513 aa-0.14□□□□□ -2.43
snR40snR40 CDC55Q00362 526 aa-0.14□□□□□ -2.43
snR40snR40 RNT1Q02555 471 aa-0.14□□□□□ -2.43
snR40snR40 CAB1Q04430 367 aa-0.14□□□□□ -2.43
snR40snR40 GAS4Q08271 471 aa-0.14□□□□□ -2.43
snR40snR40 YAP1801P38856 637 aa-0.15□□□□□ -2.43
snR40snR40 UTP22P53254 1237 aaPredicted RBP-0.15□□□□□ -2.43
snR40snR40 RSM24Q03976 319 aa-0.15□□□□□ -2.43
snR40snR40 YLR257WQ06146 321 aaKnown RBP-0.15□□□□□ -2.43
snR40snR40 BSC6Q08280 497 aa-0.15□□□□□ -2.43
snR40snR40 YHL017WP38745 532 aa-0.16□□□□□ -2.44
snR40snR40 NMA2P53204 395 aa-0.16□□□□□ -2.44
snR40snR40 APM1Q00776 475 aaPredicted RBP-0.16□□□□□ -2.44
snR40snR40 VTS1Q08831 523 aaKnown RBP RIP-Chip data-0.16□□□□□ -2.44not detected
snR40snR40 SPO21Q12411 609 aa-0.16□□□□□ -2.44
snR40snR40 ALG7P07286 448 aa-0.17□□□□□ -2.44
snR40snR40 RET1P22276 1149 aaKnown RBP-0.17□□□□□ -2.44
snR40snR40 SIM1P40472 476 aa-0.17□□□□□ -2.44
snR40snR40 HRK1Q08732 759 aaKnown RBP-0.17□□□□□ -2.44
snR40snR40 RIB2Q12362 591 aaKnown RBP-0.17□□□□□ -2.44
snR40snR40 KCS1Q12494 1050 aa-0.17□□□□□ -2.44
snR40snR40 FAB1P34756 2278 aa-0.18□□□□□ -2.44
snR40snR40 CDC43P18898 376 aa-0.18□□□□□ -2.44
snR40snR40 VPS34P22543 875 aa-0.18□□□□□ -2.44
snR40snR40 PYC2P32327 1180 aaKnown RBP-0.18□□□□□ -2.44
Retrieved 100 of 5,963 RNA–protein pairs in 18.5 ms