RNA–Protein interactions for RNA: YEL027W

VMA3, Transcript of Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase, yeast

Gene VMA3, Length 483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA3	YEL027W	CSM2	P40465	213 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	CLA4	P48562	842 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	TMA64	Q04600	565 aa	Known RBP	7.4	□□□□□ -1.22
VMA3	YEL027W	SPH1	Q06160	661 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	YPR148C	Q06523	435 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	ISW2	Q08773	1120 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	ELG1	Q12050	791 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	MAM3	Q12296	706 aa		7.4	□□□□□ -1.22
VMA3	YEL027W	CBP3	P21560	335 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	RNR3	P21672	869 aa	Known RBP	7.39	□□□□□ -1.23
VMA3	YEL027W	IME2	P32581	645 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	SHP1	P34223	423 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	KSP1	P38691	1029 aa	Known RBP	7.39	□□□□□ -1.23
VMA3	YEL027W	VPS29	P38759	282 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	BUD6	P41697	788 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	EPL1	P43572	832 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	LSB1	P53281	241 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	YPL034W	Q03083	165 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	UTP4	Q06679	776 aa	Known RBP	7.39	□□□□□ -1.23
VMA3	YEL027W	YPL150W	Q12152	901 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	YOR111W	Q99210	232 aa		7.39	□□□□□ -1.23
VMA3	YEL027W	SWI4	P25302	1093 aa	Known RBP	7.38	□□□□□ -1.23
VMA3	YEL027W	BCS1	P32839	456 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	YKR023W	P36119	530 aa	Known RBP	7.38	□□□□□ -1.23
VMA3	YEL027W	FIR1	P40020	876 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	YFL040W	P43562	540 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	ENT3	P47160	408 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	MDM1	Q01846	1127 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	FMP30	Q02883	468 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	SLD5	Q03406	294 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	DUS3	Q06053	668 aa	Known RBP	7.38	□□□□□ -1.23
VMA3	YEL027W	DSE3	Q08729	430 aa		7.38	□□□□□ -1.23
VMA3	YEL027W	MSC6	Q08818	692 aa	Known RBP	7.38	□□□□□ -1.23
VMA3	YEL027W	ECM29	P38737	1868 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	TAO3	P40468	2376 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	CPA2	P03965	1118 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	HCA4	P20448	770 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	DBP1	P24784	617 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	SEC20	P28791	383 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	PRX1	P34227	261 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	WHI3	P34761	661 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	EBP2	P36049	427 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	MCR1	P36060	302 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	RPN10	P38886	268 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	BDH2	P39713	417 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	VPS53	P47061	822 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	PEX14	P53112	341 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	GDE1	Q02979	1223 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	YDR341C	Q05506	607 aa	Known RBP	7.37	□□□□□ -1.23
VMA3	YEL027W	HRQ1	Q05549	1077 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	SUE1	Q06524	206 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	ERP3	Q12403	225 aa		7.37	□□□□□ -1.23
VMA3	YEL027W	SRP54	P20424	541 aa	Known RBP	7.36	□□□□□ -1.23
VMA3	YEL027W	YUR1	P26725	428 aa		7.36	□□□□□ -1.23
VMA3	YEL027W	MCM4	P30665	933 aa	Known RBP	7.36	□□□□□ -1.23
VMA3	YEL027W	ASF1	P32447	279 aa		7.36	□□□□□ -1.23
VMA3	YEL027W	RFC5	P38251	354 aa		7.36	□□□□□ -1.23
VMA3	YEL027W	RXT2	P38255	430 aa		7.36	□□□□□ -1.23
VMA3	YEL027W	GUD1	Q07729	489 aa		7.36	□□□□□ -1.23
VMA3	YEL027W	HSP82	P02829	709 aa	Known RBP	7.35	□□□□□ -1.23
VMA3	YEL027W	MET6	P05694	767 aa	Known RBP	7.35	□□□□□ -1.23
VMA3	YEL027W	PDC1	P06169	563 aa	Known RBP	7.35	□□□□□ -1.23
VMA3	YEL027W	TKL1	P23254	680 aa	Known RBP	7.35	□□□□□ -1.23
VMA3	YEL027W	SEC8	P32855	1065 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	TFC4	P33339	1025 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	MAL33	P38157	468 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	NOC2	P39744	710 aa	Known RBP	7.35	□□□□□ -1.23
VMA3	YEL027W	PCI8	P40512	444 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	HYR1	P40581	163 aa	Known RBP	7.35	□□□□□ -1.23
VMA3	YEL027W	SKP2	P42843	763 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	HST1	P53685	503 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	EAR1	Q03212	550 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	CEX1	Q12453	761 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	RKM4	Q12504	494 aa		7.35	□□□□□ -1.23
VMA3	YEL027W	TY1B-A	O13527	1196 aa	Known RBP	7.34	□□□□□ -1.23
VMA3	YEL027W	CIT1	P00890	479 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	PGI1	P12709	554 aa	Known RBP	7.34	□□□□□ -1.23
VMA3	YEL027W	POX1	P13711	748 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	TIM23	P32897	222 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	KTR2	P33550	425 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	REG2	P38232	338 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	NDT80	P38830	627 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	CCT3	P39077	534 aa	Known RBP	7.34	□□□□□ -1.23
VMA3	YEL027W	TPM2	P40414	161 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	FMS1	P50264	508 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	LIF1	P53150	421 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	YGL081W	P53156	320 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	YGL039W	P53183	348 aa	Known RBP	7.34	□□□□□ -1.23
VMA3	YEL027W	EAF7	P53911	425 aa	Known RBP	7.34	□□□□□ -1.23
VMA3	YEL027W	ISA1	Q07821	250 aa	Predicted RBP	7.34	□□□□□ -1.23
VMA3	YEL027W	TRM11	Q12463	433 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	YDR461C-A	Q2V2P7	80 aa		7.34	□□□□□ -1.23
VMA3	YEL027W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	7.33	□□□□□ -1.24	not detected
VMA3	YEL027W	CDC6	P09119	513 aa		7.33	□□□□□ -1.24
VMA3	YEL027W	STI1	P15705	589 aa	Known RBP RIP-Chip data	7.33	□□□□□ -1.24	not detected
VMA3	YEL027W	RPL8A	P17076	256 aa	Known RBP	7.33	□□□□□ -1.24
VMA3	YEL027W	RDS1	P25611	832 aa		7.33	□□□□□ -1.24
VMA3	YEL027W	DBP7	P36120	742 aa	Known RBP	7.33	□□□□□ -1.24
VMA3	YEL027W	GPT2	P36148	743 aa		7.33	□□□□□ -1.24
VMA3	YEL027W	SCS3	P53012	380 aa		7.33	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 46.5 ms