RNA–Protein interactions for RNA: YDR182W

CDC1, Transcript of Putative lipid phosphatase of the endoplasmic reticulum, yeast

Gene CDC1, Length 1,476 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC1	YDR182W	SPP1	Q03012	353 aa		7.52	□□□□□ -1.21
CDC1	YDR182W	CSC1	Q06538	782 aa		7.52	□□□□□ -1.21
CDC1	YDR182W	MSC6	Q08818	692 aa	Known RBP	7.52	□□□□□ -1.21
CDC1	YDR182W	RKM4	Q12504	494 aa		7.52	□□□□□ -1.21
CDC1	YDR182W	HIP1	P06775	603 aa		7.51	□□□□□ -1.21
CDC1	YDR182W	YUR1	P26725	428 aa		7.51	□□□□□ -1.21
CDC1	YDR182W	DLD1	P32891	587 aa		7.51	□□□□□ -1.21
CDC1	YDR182W	NDT80	P38830	627 aa		7.51	□□□□□ -1.21
CDC1	YDR182W	VPS45	P38932	577 aa		7.51	□□□□□ -1.21
CDC1	YDR182W	VPS70	P47161	811 aa		7.51	□□□□□ -1.21
CDC1	YDR182W	UTP4	Q06679	776 aa	Known RBP	7.51	□□□□□ -1.21
CDC1	YDR182W	NUC1	P08466	329 aa		7.5	□□□□□ -1.21
CDC1	YDR182W	MIP1	P15801	1254 aa		7.5	□□□□□ -1.21
CDC1	YDR182W	RPL8B	P29453	256 aa	Known RBP	7.5	□□□□□ -1.21
CDC1	YDR182W	GUT1	P32190	709 aa		7.5	□□□□□ -1.21
CDC1	YDR182W	WHI3	P34761	661 aa	Known RBP	7.5	□□□□□ -1.21
CDC1	YDR182W	TIF11	P38912	153 aa	Known RBP	7.5	□□□□□ -1.21
CDC1	YDR182W	NOC2	P39744	710 aa	Known RBP	7.5	□□□□□ -1.21
CDC1	YDR182W	SKP2	P42843	763 aa		7.5	□□□□□ -1.21
CDC1	YDR182W	SPH1	Q06160	661 aa		7.5	□□□□□ -1.21
CDC1	YDR182W	SSF2	Q12153	453 aa	Predicted RBP	7.5	□□□□□ -1.21
CDC1	YDR182W	ERP3	Q12403	225 aa		7.5	□□□□□ -1.21
CDC1	YDR182W	PDC1	P06169	563 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	VAS1	P07806	1104 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	DCW1	P36091	449 aa		7.49	□□□□□ -1.21
CDC1	YDR182W	CSM2	P40465	213 aa		7.49	□□□□□ -1.21
CDC1	YDR182W	CTR1	P49573	406 aa		7.49	□□□□□ -1.21
CDC1	YDR182W	RPT6	Q01939	405 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	RER2	P35196	286 aa		7.49	□□□□□ -1.21
CDC1	YDR182W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	7.49	□□□□□ -1.21	not detected
CDC1	YDR182W	EAP1	P36041	632 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	MCR1	P36060	302 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	AAP1	P37898	856 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	YFL040W	P43562	540 aa		7.49	□□□□□ -1.21
CDC1	YDR182W	YMR321C	Q04898	105 aa		7.49	□□□□□ -1.21
CDC1	YDR182W	PGA3	Q12746	312 aa	Known RBP	7.49	□□□□□ -1.21
CDC1	YDR182W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	7.48	□□□□□ -1.21	not detected
CDC1	YDR182W	POX1	P13711	748 aa		7.48	□□□□□ -1.21
CDC1	YDR182W	SRP54	P20424	541 aa	Known RBP	7.48	□□□□□ -1.21
CDC1	YDR182W	IMP2'	P32351	346 aa		7.48	□□□□□ -1.21
CDC1	YDR182W	DBP7	P36120	742 aa	Known RBP	7.48	□□□□□ -1.21
CDC1	YDR182W	REG2	P38232	338 aa		7.48	□□□□□ -1.21
CDC1	YDR182W	FMP30	Q02883	468 aa		7.48	□□□□□ -1.21
CDC1	YDR182W	FPR4	Q06205	392 aa	Predicted RBP	7.48	□□□□□ -1.21
CDC1	YDR182W	SPN1	Q06505	410 aa	Predicted RBP	7.48	□□□□□ -1.21
CDC1	YDR182W	MAK31	P23059	88 aa		7.47	□□□□□ -1.21
CDC1	YDR182W	TKL1	P23254	680 aa	Known RBP	7.47	□□□□□ -1.21
CDC1	YDR182W	MCM4	P30665	933 aa	Known RBP	7.47	□□□□□ -1.21
CDC1	YDR182W	CRG1	P38892	291 aa	RIP-Chip data	7.47	□□□□□ -1.21	not detected
CDC1	YDR182W	ULI1	P43604	169 aa		7.47	□□□□□ -1.21
CDC1	YDR182W	VPS53	P47061	822 aa		7.47	□□□□□ -1.21
CDC1	YDR182W	EAR1	Q03212	550 aa		7.47	□□□□□ -1.21
CDC1	YDR182W	MYO5	Q04439	1219 aa	Known RBP	7.47	□□□□□ -1.21
CDC1	YDR182W	TFC6	Q06339	672 aa		7.47	□□□□□ -1.21
CDC1	YDR182W	AHC1	Q12433	566 aa		7.47	□□□□□ -1.21
CDC1	YDR182W	RAD50	P12753	1312 aa		7.46	□□□□□ -1.22
CDC1	YDR182W	TFC4	P33339	1025 aa		7.46	□□□□□ -1.22
CDC1	YDR182W	CIC1	P38779	376 aa	Known RBP	7.46	□□□□□ -1.22
CDC1	YDR182W	PES4	P39684	611 aa		7.46	□□□□□ -1.22
CDC1	YDR182W	DAK1	P54838	584 aa	Known RBP	7.46	□□□□□ -1.22
CDC1	YDR182W	ECM16	Q04217	1267 aa	Known RBP	7.46	□□□□□ -1.22
CDC1	YDR182W	TRM11	Q12463	433 aa		7.46	□□□□□ -1.22
CDC1	YDR182W	YDR524C-B	Q3E6R4	66 aa		7.46	□□□□□ -1.22
CDC1	YDR182W	HTA1	P04911	132 aa	Known RBP	7.45	□□□□□ -1.22
CDC1	YDR182W	HTA2	P04912	132 aa		7.45	□□□□□ -1.22
CDC1	YDR182W	FLR1	P38124	548 aa		7.45	□□□□□ -1.22
CDC1	YDR182W	FMS1	P50264	508 aa		7.45	□□□□□ -1.22
CDC1	YDR182W	LSB1	P53281	241 aa		7.45	□□□□□ -1.22
CDC1	YDR182W	VPS72	Q03388	795 aa		7.45	□□□□□ -1.22
CDC1	YDR182W	MDM1	Q01846	1127 aa		7.44	□□□□□ -1.22
CDC1	YDR182W	GUD1	Q07729	489 aa		7.44	□□□□□ -1.22
CDC1	YDR182W	RTP1	Q12751	981 aa		7.44	□□□□□ -1.22
CDC1	YDR182W	MYO1	P08964	1928 aa		7.44	□□□□□ -1.22
CDC1	YDR182W	UBR2	Q07963	1872 aa		7.44	□□□□□ -1.22
CDC1	YDR182W	MAS2	P11914	482 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	BRN1	P38170	754 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	LIF1	P53150	421 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	CLF1	Q12309	687 aa	Predicted RBP	7.43	□□□□□ -1.22
CDC1	YDR182W	YOR111W	Q99210	232 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	MOT1	P32333	1867 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	GPT2	P36148	743 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	GRS1	P38088	690 aa	Known RBP	7.43	□□□□□ -1.22
CDC1	YDR182W	HXT17	P53631	564 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	EST2	Q06163	884 aa		7.43	□□□□□ -1.22
CDC1	YDR182W	ESF1	Q06344	628 aa	Known RBP	7.43	□□□□□ -1.22
CDC1	YDR182W	PEP3	P27801	918 aa		7.42	□□□□□ -1.22
CDC1	YDR182W	SEC8	P32855	1065 aa		7.42	□□□□□ -1.22
CDC1	YDR182W	RPS7B	P48164	190 aa	Known RBP	7.42	□□□□□ -1.22
CDC1	YDR182W	ISA1	Q07821	250 aa	Predicted RBP	7.42	□□□□□ -1.22
CDC1	YDR182W	DSE3	Q08729	430 aa		7.42	□□□□□ -1.22
CDC1	YDR182W	IOC2	Q12072	812 aa		7.42	□□□□□ -1.22
CDC1	YDR182W	LDB19	Q12502	818 aa		7.42	□□□□□ -1.22
CDC1	YDR182W	SOL3	P38858	249 aa		7.41	□□□□□ -1.22
CDC1	YDR182W	YNL115C	P53925	644 aa		7.41	□□□□□ -1.22
CDC1	YDR182W	PTA1	Q01329	785 aa	Predicted RBP	7.41	□□□□□ -1.22
CDC1	YDR182W	YLR326W	Q06170	240 aa	Known RBP	7.41	□□□□□ -1.22
CDC1	YDR182W	VIP1	Q06685	1146 aa	Known RBP	7.41	□□□□□ -1.22
CDC1	YDR182W	OXR1	Q08952	273 aa		7.41	□□□□□ -1.22
CDC1	YDR182W	YDR034W-B	Q6Q5X2	51 aa		7.41	□□□□□ -1.22
CDC1	YDR182W	YMR084W	A2P2R3	262 aa		7.4	□□□□□ -1.22

Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms